HEADER LIGASE 02-OCT-20 7KBL TITLE BIOTIN CARBOXYLASE DOMAIN OF THERMOPHILIC 2-OXOGLUTARATE CARBOXYLASE TITLE 2 BOUND TO BICARBONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE CARBOXYLASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BIOTIN CARBOXYLASE DOMAIN; COMPND 5 SYNONYM: 2-OXOGLUTARATE CARBOXYLASE BETA SUBUNIT; COMPND 6 EC: 6.4.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 940; SOURCE 4 GENE: CFIB, HTH_1393, HYDTH_1383; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE1 KEYWDS BIOTIN CARBOXYLASE, BIOTIN-DEPENDENT CARBOXYLASE, PYRUVATE KEYWDS 2 CARBOXYLASE, ATP-GRASP, AQUIFICALES, RTCA, DIMER INTERFACE, KEYWDS 3 BICARBONATE, SEQUENCE DETERMINING POSITIONS, STRUCTURAL WATERS, KEYWDS 4 THERMOPHILE, CARBON FIXATION, THERMOPHILIC PROTEIN, DIMER, WET KEYWDS 5 INTERFACE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.K.BUHRMAN,R.B.ROSE,P.ENRIQUEZ,V.TRUONG REVDAT 3 18-OCT-23 7KBL 1 REMARK REVDAT 2 17-FEB-21 7KBL 1 JRNL REVDAT 1 27-JAN-21 7KBL 0 JRNL AUTH G.BUHRMAN,P.ENRIQUEZ,L.DILLARD,H.BAER,V.TRUONG,A.M.GRUNDEN, JRNL AUTH 2 R.B.ROSE JRNL TITL STRUCTURE, FUNCTION, AND THERMAL ADAPTATION OF THE BIOTIN JRNL TITL 2 CARBOXYLASE DOMAIN DIMER FROM HYDROGENOBACTER THERMOPHILUS JRNL TITL 3 2-OXOGLUTARATE CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 60 324 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 33464881 JRNL DOI 10.1021/ACS.BIOCHEM.0C00815 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7460 - 5.3981 0.99 3771 142 0.1843 0.1937 REMARK 3 2 5.3981 - 4.2888 1.00 3617 137 0.1466 0.1793 REMARK 3 3 4.2888 - 3.7478 1.00 3582 136 0.1590 0.2108 REMARK 3 4 3.7478 - 3.4057 0.99 3555 135 0.1821 0.2527 REMARK 3 5 3.4057 - 3.1619 1.00 3566 136 0.1883 0.2468 REMARK 3 6 3.1619 - 2.9756 1.00 3540 134 0.2015 0.2603 REMARK 3 7 2.9756 - 2.8267 1.00 3548 132 0.1870 0.2612 REMARK 3 8 2.8267 - 2.7038 1.00 3529 137 0.1884 0.2523 REMARK 3 9 2.7038 - 2.5998 1.00 3512 134 0.1885 0.2713 REMARK 3 10 2.5998 - 2.5101 1.00 3510 135 0.1959 0.2590 REMARK 3 11 2.5101 - 2.4316 1.00 3524 132 0.2093 0.2791 REMARK 3 12 2.4316 - 2.3622 1.00 3519 133 0.2213 0.3116 REMARK 3 13 2.3622 - 2.3000 1.00 3516 135 0.2446 0.3157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7088 REMARK 3 ANGLE : 1.158 9592 REMARK 3 CHIRALITY : 0.061 1055 REMARK 3 PLANARITY : 0.008 1245 REMARK 3 DIHEDRAL : 16.393 4252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 437 OR REMARK 3 (RESID 438 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 439 REMARK 3 THROUGH 450)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 33 OR REMARK 3 (RESID 34 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 35 REMARK 3 THROUGH 114 OR (RESID 115 THROUGH 116 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 117 THROUGH 133 OR REMARK 3 (RESID 134 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 135 OR REMARK 3 (RESID 136 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 137 OR REMARK 3 (RESID 138 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 139 OR REMARK 3 (RESID 140 THROUGH 141 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 142 THROUGH 143 OR (RESID 144 REMARK 3 THROUGH 150 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 151 OR (RESID 152 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 153 OR (RESID 154 THROUGH 158 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR (RESID 159 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB )) OR (RESID REMARK 3 168 THROUGH 171 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 172 OR (RESID 173 THROUGH 174 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 175 OR (RESID 176 THROUGH 178 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 179 THROUGH 180 REMARK 3 OR (RESID 181 THROUGH 183 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 184 THROUGH 185 OR (RESID 186 REMARK 3 THROUGH 191 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 192 OR (RESID 193 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 194 THROUGH 195 OR (RESID 196 REMARK 3 THROUGH 197 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 198 THROUGH 202 OR (RESID 203 THROUGH 204 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 205 THROUGH 232 REMARK 3 OR (RESID 233 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 234 THROUGH 248 OR (RESID 249 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 250 THROUGH 279 OR (RESID 280 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 281 THROUGH 320 REMARK 3 OR (RESID 321 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG )) REMARK 3 OR RESID 322 THROUGH 343 OR (RESID 344 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE )) OR (RESID 345 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 346 THROUGH 433 OR (RESID 434 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 435 THROUGH 440 REMARK 3 OR (RESID 441 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 442 THROUGH 447 OR (RESID 448 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 449 THROUGH 450)) REMARK 3 ATOM PAIRS NUMBER : 5028 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDBID 1ULZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.02M CITRIC ACID, 0.08M BIS REMARK 280 -TRIS-PROPANE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.74800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.97450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.57700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.97450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.74800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.57700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 LYS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ALA A 160 REMARK 465 GLY A 161 REMARK 465 GLY A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 ARG A 165 REMARK 465 GLY A 166 REMARK 465 ILE A 167 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 ARG A 453 REMARK 465 ASP A 454 REMARK 465 LYS A 455 REMARK 465 GLU A 456 REMARK 465 ASP A 457 REMARK 465 PHE A 458 REMARK 465 VAL A 459 REMARK 465 ALA A 460 REMARK 465 PHE A 461 REMARK 465 ILE A 462 REMARK 465 SER A 463 REMARK 465 ALA A 464 REMARK 465 VAL A 465 REMARK 465 ILE A 466 REMARK 465 ALA A 467 REMARK 465 SER A 468 REMARK 465 TYR A 469 REMARK 465 HIS A 470 REMARK 465 GLY A 471 REMARK 465 LEU A 472 REMARK 465 MET B -8 REMARK 465 LYS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 0 REMARK 465 HIS B 452 REMARK 465 ARG B 453 REMARK 465 ASP B 454 REMARK 465 LYS B 455 REMARK 465 GLU B 456 REMARK 465 ASP B 457 REMARK 465 PHE B 458 REMARK 465 VAL B 459 REMARK 465 ALA B 460 REMARK 465 PHE B 461 REMARK 465 ILE B 462 REMARK 465 SER B 463 REMARK 465 ALA B 464 REMARK 465 VAL B 465 REMARK 465 ILE B 466 REMARK 465 ALA B 467 REMARK 465 SER B 468 REMARK 465 TYR B 469 REMARK 465 HIS B 470 REMARK 465 GLY B 471 REMARK 465 LEU B 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 ILE A 136 CG1 CG2 CD1 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 VAL A 140 CG1 CG2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 146 CG1 CG2 CD1 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 TYR A 152 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 154 CG1 CG2 REMARK 470 LEU A 155 CG CD1 CD2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 SER A 159 O OG REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 169 CG1 CG2 CD1 REMARK 470 CYS A 170 SG REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 VAL A 177 CG1 CG2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 VAL A 188 CG1 CG2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 PHE A 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 196 CG CD1 CD2 REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 ASN A 204 CG OD1 ND2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 321 CD NE CZ NH1 NH2 REMARK 470 LYS A 344 NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 ASP A 448 CG OD1 OD2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 438 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 451 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 59.32 -91.48 REMARK 500 PHE A 83 -115.84 42.86 REMARK 500 ASP A 134 55.21 -96.72 REMARK 500 SER A 269 -158.11 77.42 REMARK 500 THR A 290 60.63 -102.38 REMARK 500 LYS A 345 55.08 -116.63 REMARK 500 GLU A 355 -87.40 -107.13 REMARK 500 TYR A 357 101.20 -160.41 REMARK 500 ALA A 370 25.10 -140.34 REMARK 500 PHE B 83 -113.88 45.62 REMARK 500 SER B 118 -52.12 166.35 REMARK 500 SER B 269 -156.97 75.16 REMARK 500 THR B 290 59.36 -103.01 REMARK 500 LYS B 345 59.00 -119.05 REMARK 500 GLU B 355 -85.23 -103.94 REMARK 500 TYR B 357 99.32 -162.38 REMARK 500 ARG B 438 -12.00 88.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 756 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT B 501 DBREF 7KBL A 1 472 UNP D3DJ42 2OCS_HYDTT 1 472 DBREF 7KBL B 1 472 UNP D3DJ42 2OCS_HYDTT 1 472 SEQADV 7KBL MET A -8 UNP D3DJ42 INITIATING METHIONINE SEQADV 7KBL LYS A -7 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -6 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -5 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -4 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -3 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -2 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS A -1 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL ALA A 0 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL MET B -8 UNP D3DJ42 INITIATING METHIONINE SEQADV 7KBL LYS B -7 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -6 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -5 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -4 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -3 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -2 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL HIS B -1 UNP D3DJ42 EXPRESSION TAG SEQADV 7KBL ALA B 0 UNP D3DJ42 EXPRESSION TAG SEQRES 1 A 481 MET LYS HIS HIS HIS HIS HIS HIS ALA MET PHE LYS LYS SEQRES 2 A 481 VAL LEU VAL ALA ASN ARG GLY GLU ILE ALA CYS ARG VAL SEQRES 3 A 481 ILE ARG ALA CYS LYS GLU LEU GLY ILE GLN THR VAL ALA SEQRES 4 A 481 ILE TYR ASN GLU ILE GLU SER THR ALA ARG HIS VAL LYS SEQRES 5 A 481 MET ALA ASP GLU ALA TYR MET ILE GLY VAL ASN PRO LEU SEQRES 6 A 481 ASP THR TYR LEU ASN ALA GLU ARG ILE VAL ASP LEU ALA SEQRES 7 A 481 LEU GLU VAL GLY ALA GLU ALA ILE HIS PRO GLY TYR GLY SEQRES 8 A 481 PHE LEU ALA GLU ASN GLU HIS PHE ALA ARG LEU CYS GLU SEQRES 9 A 481 GLU LYS GLY ILE THR PHE ILE GLY PRO HIS TRP LYS VAL SEQRES 10 A 481 ILE GLU LEU MET GLY ASP LYS ALA ARG SER LYS GLU VAL SEQRES 11 A 481 MET LYS ARG ALA GLY VAL PRO THR VAL PRO GLY SER ASP SEQRES 12 A 481 GLY ILE LEU LYS ASP VAL GLU GLU ALA LYS ARG ILE ALA SEQRES 13 A 481 LYS GLU ILE GLY TYR PRO VAL LEU LEU LYS ALA SER ALA SEQRES 14 A 481 GLY GLY GLY GLY ARG GLY ILE ARG ILE CYS ARG ASN GLU SEQRES 15 A 481 GLU GLU LEU VAL ARG ASN TYR GLU ASN ALA TYR ASN GLU SEQRES 16 A 481 ALA VAL LYS ALA PHE GLY ARG GLY ASP LEU LEU LEU GLU SEQRES 17 A 481 LYS TYR ILE GLU ASN PRO LYS HIS ILE GLU PHE GLN VAL SEQRES 18 A 481 LEU GLY ASP LYS TYR GLY ASN VAL ILE HIS LEU GLY GLU SEQRES 19 A 481 ARG ASP CYS SER ILE GLN ARG ARG ASN GLN LYS LEU VAL SEQRES 20 A 481 GLU ILE ALA PRO SER LEU LEU LEU THR PRO GLU GLN ARG SEQRES 21 A 481 GLU TYR TYR GLY SER LEU VAL VAL LYS ALA ALA LYS GLU SEQRES 22 A 481 ILE GLY TYR TYR SER ALA GLY THR MET GLU PHE ILE ALA SEQRES 23 A 481 ASP GLU LYS GLY ASN LEU TYR PHE ILE GLU MET ASN THR SEQRES 24 A 481 ARG ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR SEQRES 25 A 481 GLY VAL ASP ILE VAL LYS TRP GLN ILE ARG ILE ALA ALA SEQRES 26 A 481 GLY GLU ARG LEU ARG TYR SER GLN GLU ASP ILE ARG PHE SEQRES 27 A 481 ASN GLY TYR SER ILE GLU CYS ARG ILE ASN ALA GLU ASP SEQRES 28 A 481 PRO LYS LYS GLY PHE ALA PRO SER ILE GLY THR ILE GLU SEQRES 29 A 481 ARG TYR TYR VAL PRO GLY GLY PHE GLY ILE ARG VAL GLU SEQRES 30 A 481 HIS ALA SER SER LYS GLY TYR GLU ILE THR PRO TYR TYR SEQRES 31 A 481 ASP SER LEU ILE ALA LYS LEU ILE VAL TRP ALA PRO LEU SEQRES 32 A 481 TRP GLU VAL ALA VAL ASP ARG MET ARG SER ALA LEU GLU SEQRES 33 A 481 THR TYR GLU ILE SER GLY VAL LYS THR THR ILE PRO LEU SEQRES 34 A 481 LEU ILE ASN ILE MET LYS ASP LYS ASP PHE ARG ASP GLY SEQRES 35 A 481 LYS PHE THR THR ARG TYR LEU GLU GLU HIS PRO HIS VAL SEQRES 36 A 481 PHE ASP TYR ALA GLU HIS ARG ASP LYS GLU ASP PHE VAL SEQRES 37 A 481 ALA PHE ILE SER ALA VAL ILE ALA SER TYR HIS GLY LEU SEQRES 1 B 481 MET LYS HIS HIS HIS HIS HIS HIS ALA MET PHE LYS LYS SEQRES 2 B 481 VAL LEU VAL ALA ASN ARG GLY GLU ILE ALA CYS ARG VAL SEQRES 3 B 481 ILE ARG ALA CYS LYS GLU LEU GLY ILE GLN THR VAL ALA SEQRES 4 B 481 ILE TYR ASN GLU ILE GLU SER THR ALA ARG HIS VAL LYS SEQRES 5 B 481 MET ALA ASP GLU ALA TYR MET ILE GLY VAL ASN PRO LEU SEQRES 6 B 481 ASP THR TYR LEU ASN ALA GLU ARG ILE VAL ASP LEU ALA SEQRES 7 B 481 LEU GLU VAL GLY ALA GLU ALA ILE HIS PRO GLY TYR GLY SEQRES 8 B 481 PHE LEU ALA GLU ASN GLU HIS PHE ALA ARG LEU CYS GLU SEQRES 9 B 481 GLU LYS GLY ILE THR PHE ILE GLY PRO HIS TRP LYS VAL SEQRES 10 B 481 ILE GLU LEU MET GLY ASP LYS ALA ARG SER LYS GLU VAL SEQRES 11 B 481 MET LYS ARG ALA GLY VAL PRO THR VAL PRO GLY SER ASP SEQRES 12 B 481 GLY ILE LEU LYS ASP VAL GLU GLU ALA LYS ARG ILE ALA SEQRES 13 B 481 LYS GLU ILE GLY TYR PRO VAL LEU LEU LYS ALA SER ALA SEQRES 14 B 481 GLY GLY GLY GLY ARG GLY ILE ARG ILE CYS ARG ASN GLU SEQRES 15 B 481 GLU GLU LEU VAL ARG ASN TYR GLU ASN ALA TYR ASN GLU SEQRES 16 B 481 ALA VAL LYS ALA PHE GLY ARG GLY ASP LEU LEU LEU GLU SEQRES 17 B 481 LYS TYR ILE GLU ASN PRO LYS HIS ILE GLU PHE GLN VAL SEQRES 18 B 481 LEU GLY ASP LYS TYR GLY ASN VAL ILE HIS LEU GLY GLU SEQRES 19 B 481 ARG ASP CYS SER ILE GLN ARG ARG ASN GLN LYS LEU VAL SEQRES 20 B 481 GLU ILE ALA PRO SER LEU LEU LEU THR PRO GLU GLN ARG SEQRES 21 B 481 GLU TYR TYR GLY SER LEU VAL VAL LYS ALA ALA LYS GLU SEQRES 22 B 481 ILE GLY TYR TYR SER ALA GLY THR MET GLU PHE ILE ALA SEQRES 23 B 481 ASP GLU LYS GLY ASN LEU TYR PHE ILE GLU MET ASN THR SEQRES 24 B 481 ARG ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR SEQRES 25 B 481 GLY VAL ASP ILE VAL LYS TRP GLN ILE ARG ILE ALA ALA SEQRES 26 B 481 GLY GLU ARG LEU ARG TYR SER GLN GLU ASP ILE ARG PHE SEQRES 27 B 481 ASN GLY TYR SER ILE GLU CYS ARG ILE ASN ALA GLU ASP SEQRES 28 B 481 PRO LYS LYS GLY PHE ALA PRO SER ILE GLY THR ILE GLU SEQRES 29 B 481 ARG TYR TYR VAL PRO GLY GLY PHE GLY ILE ARG VAL GLU SEQRES 30 B 481 HIS ALA SER SER LYS GLY TYR GLU ILE THR PRO TYR TYR SEQRES 31 B 481 ASP SER LEU ILE ALA LYS LEU ILE VAL TRP ALA PRO LEU SEQRES 32 B 481 TRP GLU VAL ALA VAL ASP ARG MET ARG SER ALA LEU GLU SEQRES 33 B 481 THR TYR GLU ILE SER GLY VAL LYS THR THR ILE PRO LEU SEQRES 34 B 481 LEU ILE ASN ILE MET LYS ASP LYS ASP PHE ARG ASP GLY SEQRES 35 B 481 LYS PHE THR THR ARG TYR LEU GLU GLU HIS PRO HIS VAL SEQRES 36 B 481 PHE ASP TYR ALA GLU HIS ARG ASP LYS GLU ASP PHE VAL SEQRES 37 B 481 ALA PHE ILE SER ALA VAL ILE ALA SER TYR HIS GLY LEU HET BCT A 501 5 HET BCT B 501 5 HETNAM BCT BICARBONATE ION FORMUL 3 BCT 2(C H O3 1-) FORMUL 5 HOH *356(H2 O) HELIX 1 AA1 ARG A 10 LEU A 24 1 15 HELIX 2 AA2 ASN A 33 SER A 37 5 5 HELIX 3 AA3 ALA A 39 ALA A 45 1 7 HELIX 4 AA4 LEU A 56 ASN A 61 1 6 HELIX 5 AA5 ASN A 61 GLY A 73 1 13 HELIX 6 AA6 ASN A 87 LYS A 97 1 11 HELIX 7 AA7 HIS A 105 GLY A 113 1 9 HELIX 8 AA8 ASP A 114 GLY A 126 1 13 HELIX 9 AA9 ASP A 139 GLY A 151 1 13 HELIX 10 AB1 ASN A 172 GLY A 192 1 21 HELIX 11 AB2 THR A 247 GLY A 266 1 20 HELIX 12 AB3 GLU A 295 GLY A 304 1 10 HELIX 13 AB4 ASP A 306 ALA A 316 1 11 HELIX 14 AB5 SER A 323 ILE A 327 5 5 HELIX 15 AB6 ASP A 342 GLY A 346 5 5 HELIX 16 AB7 LEU A 394 TYR A 409 1 16 HELIX 17 AB8 THR A 417 ASP A 427 1 11 HELIX 18 AB9 ASP A 427 ASP A 432 1 6 HELIX 19 AC1 HIS A 443 ASP A 448 5 6 HELIX 20 AC2 ARG B 10 GLY B 25 1 16 HELIX 21 AC3 ASN B 33 SER B 37 5 5 HELIX 22 AC4 ALA B 39 ALA B 45 1 7 HELIX 23 AC5 LEU B 56 ASN B 61 1 6 HELIX 24 AC6 ASN B 61 GLY B 73 1 13 HELIX 25 AC7 ASN B 87 LYS B 97 1 11 HELIX 26 AC8 HIS B 105 GLY B 113 1 9 HELIX 27 AC9 LYS B 115 GLY B 126 1 12 HELIX 28 AD1 ASP B 139 GLY B 151 1 13 HELIX 29 AD2 ASN B 172 GLY B 192 1 21 HELIX 30 AD3 THR B 247 ILE B 265 1 19 HELIX 31 AD4 GLU B 295 GLY B 304 1 10 HELIX 32 AD5 ASP B 306 ALA B 316 1 11 HELIX 33 AD6 SER B 323 ILE B 327 5 5 HELIX 34 AD7 ASP B 342 GLY B 346 5 5 HELIX 35 AD8 LEU B 394 GLU B 407 1 14 HELIX 36 AD9 THR B 417 LYS B 426 1 10 HELIX 37 AE1 ASP B 427 ASP B 432 1 6 HELIX 38 AE2 HIS B 443 ASP B 448 5 6 SHEET 1 AA1 5 GLU A 47 MET A 50 0 SHEET 2 AA1 5 GLN A 27 TYR A 32 1 N ALA A 30 O GLU A 47 SHEET 3 AA1 5 LYS A 4 VAL A 7 1 N VAL A 5 O GLN A 27 SHEET 4 AA1 5 ALA A 76 HIS A 78 1 O ALA A 76 N LEU A 6 SHEET 5 AA1 5 THR A 100 PHE A 101 1 O THR A 100 N ILE A 77 SHEET 1 AA2 3 ILE A 169 CYS A 170 0 SHEET 2 AA2 3 VAL A 154 ALA A 158 -1 N VAL A 154 O CYS A 170 SHEET 3 AA2 3 LEU A 196 LYS A 200 -1 O LEU A 197 N LYS A 157 SHEET 1 AA3 8 LEU A 283 ASN A 289 0 SHEET 2 AA3 8 SER A 269 ALA A 277 -1 N GLU A 274 O GLU A 287 SHEET 3 AA3 8 LYS A 206 GLY A 214 -1 N VAL A 212 O GLY A 271 SHEET 4 AA3 8 VAL A 220 ARG A 232 -1 O ILE A 221 N LEU A 213 SHEET 5 AA3 8 GLN A 235 ALA A 241 -1 O GLN A 235 N ARG A 232 SHEET 6 AA3 8 TYR A 332 ASN A 339 -1 O GLU A 335 N GLU A 239 SHEET 7 AA3 8 LEU A 384 ALA A 392 -1 O ILE A 385 N ILE A 338 SHEET 8 AA3 8 ILE A 365 HIS A 369 -1 N ARG A 366 O ILE A 389 SHEET 1 AA4 2 GLY A 352 THR A 353 0 SHEET 2 AA4 2 GLU A 376 ILE A 377 -1 O ILE A 377 N GLY A 352 SHEET 1 AA5 2 TYR A 357 TYR A 358 0 SHEET 2 AA5 2 GLU A 410 ILE A 411 -1 O GLU A 410 N TYR A 358 SHEET 1 AA6 5 GLU B 47 MET B 50 0 SHEET 2 AA6 5 GLN B 27 TYR B 32 1 N ALA B 30 O GLU B 47 SHEET 3 AA6 5 LYS B 4 VAL B 7 1 N VAL B 7 O VAL B 29 SHEET 4 AA6 5 ALA B 76 HIS B 78 1 O ALA B 76 N LEU B 6 SHEET 5 AA6 5 THR B 100 PHE B 101 1 O THR B 100 N ILE B 77 SHEET 1 AA7 3 ARG B 168 CYS B 170 0 SHEET 2 AA7 3 VAL B 154 ALA B 158 -1 N VAL B 154 O CYS B 170 SHEET 3 AA7 3 LEU B 196 LYS B 200 -1 O GLU B 199 N LEU B 155 SHEET 1 AA8 8 LEU B 283 ASN B 289 0 SHEET 2 AA8 8 SER B 269 ALA B 277 -1 N GLU B 274 O GLU B 287 SHEET 3 AA8 8 LYS B 206 GLY B 214 -1 N ILE B 208 O PHE B 275 SHEET 4 AA8 8 VAL B 220 ARG B 232 -1 O ILE B 221 N LEU B 213 SHEET 5 AA8 8 GLN B 235 ALA B 241 -1 O LEU B 237 N ILE B 230 SHEET 6 AA8 8 TYR B 332 ASN B 339 -1 O GLU B 335 N GLU B 239 SHEET 7 AA8 8 LEU B 384 ALA B 392 -1 O ILE B 385 N ILE B 338 SHEET 8 AA8 8 ILE B 365 HIS B 369 -1 N ARG B 366 O ILE B 389 SHEET 1 AA9 2 GLY B 352 THR B 353 0 SHEET 2 AA9 2 GLU B 376 ILE B 377 -1 O ILE B 377 N GLY B 352 SHEET 1 AB1 2 TYR B 357 TYR B 358 0 SHEET 2 AB1 2 GLU B 410 ILE B 411 -1 O GLU B 410 N TYR B 358 CISPEP 1 TYR A 152 PRO A 153 0 -0.49 CISPEP 2 ALA A 241 PRO A 242 0 -10.38 CISPEP 3 TYR B 152 PRO B 153 0 3.17 CISPEP 4 ALA B 241 PRO B 242 0 -10.40 SITE 1 AC1 6 LYS A 236 ARG A 291 GLN A 293 VAL A 294 SITE 2 AC1 6 GLU A 295 ARG A 337 SITE 1 AC2 6 LYS B 236 ARG B 291 GLN B 293 VAL B 294 SITE 2 AC2 6 GLU B 295 ARG B 337 CRYST1 67.496 125.154 125.949 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014816 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007940 0.00000