HEADER TRANSFERASE/INHIBITOR 05-OCT-20 7KCF TITLE CRYSTAL STRUCTURE OF HUMAN METHIONINE ADENOSYLTRANSFERASE 2A (MAT2A) TITLE 2 IN COMPLEX WITH SAM AND ALLOSTERIC INHIBITOR AGI-24512 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADOMET SYNTHASE 2,METHIONINE ADENOSYLTRANSFERASE 2,MAT 2, COMPND 5 METHIONINE ADENOSYLTRANSFERASE II,MAT-II; COMPND 6 EC: 2.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAT2A, AMS2, MATA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM, ALLOSTERIC INHIBITOR, KEYWDS 2 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PADYANA,L.JIN REVDAT 3 18-OCT-23 7KCF 1 REMARK REVDAT 2 05-MAY-21 7KCF 1 JRNL REVDAT 1 21-APR-21 7KCF 0 JRNL AUTH Z.KONTEATIS,J.TRAVINS,S.GROSS,K.MARJON,A.BARNETT,E.MANDLEY, JRNL AUTH 2 B.NICOLAY,R.NAGARAJA,Y.CHEN,Y.SUN,Z.LIU,J.YU,Z.YE,F.JIANG, JRNL AUTH 3 W.WEI,C.FANG,Y.GAO,P.KALEV,M.L.HYER,B.DELABARRE,L.JIN, JRNL AUTH 4 A.K.PADYANA,L.DANG,J.MURTIE,S.A.BILLER,Z.SUI,K.M.MARKS JRNL TITL DISCOVERY OF AG-270, A FIRST-IN-CLASS ORAL MAT2A INHIBITOR JRNL TITL 2 FOR THE TREATMENT OF TUMORS WITH HOMOZYGOUS MTAP DELETION. JRNL REF J.MED.CHEM. V. 64 4430 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33829783 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01895 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 151017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 7591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9100 - 3.4200 0.98 4971 240 0.1421 0.1424 REMARK 3 2 3.4200 - 2.7100 1.00 4914 266 0.1319 0.1590 REMARK 3 3 2.7100 - 2.3700 1.00 4842 266 0.1238 0.1318 REMARK 3 4 2.3700 - 2.1500 1.00 4825 250 0.1206 0.1365 REMARK 3 5 2.1500 - 2.0000 1.00 4830 238 0.1192 0.1251 REMARK 3 6 2.0000 - 1.8800 1.00 4830 228 0.1225 0.1397 REMARK 3 7 1.8800 - 1.7900 1.00 4758 273 0.1299 0.1439 REMARK 3 8 1.7900 - 1.7100 1.00 4810 246 0.1274 0.1403 REMARK 3 9 1.7100 - 1.6400 1.00 4796 245 0.1251 0.1257 REMARK 3 10 1.6400 - 1.5900 1.00 4744 294 0.1237 0.1615 REMARK 3 11 1.5900 - 1.5400 1.00 4817 252 0.1273 0.1452 REMARK 3 12 1.5400 - 1.4900 1.00 4741 249 0.1369 0.1565 REMARK 3 13 1.4900 - 1.4500 1.00 4780 246 0.1400 0.1674 REMARK 3 14 1.4500 - 1.4200 1.00 4738 272 0.1485 0.1546 REMARK 3 15 1.4200 - 1.3900 1.00 4791 249 0.1528 0.1577 REMARK 3 16 1.3900 - 1.3600 1.00 4790 241 0.1690 0.1774 REMARK 3 17 1.3600 - 1.3300 1.00 4726 268 0.1697 0.1635 REMARK 3 18 1.3300 - 1.3000 1.00 4740 264 0.1702 0.1786 REMARK 3 19 1.3000 - 1.2800 1.00 4772 232 0.1795 0.1813 REMARK 3 20 1.2800 - 1.2600 1.00 4780 237 0.1843 0.2036 REMARK 3 21 1.2600 - 1.2400 1.00 4769 245 0.1842 0.1802 REMARK 3 22 1.2400 - 1.2200 1.00 4757 252 0.1920 0.2055 REMARK 3 23 1.2200 - 1.2000 1.00 4736 273 0.1945 0.1977 REMARK 3 24 1.2000 - 1.1900 1.00 4739 254 0.1963 0.2158 REMARK 3 25 1.1800 - 1.1700 1.00 4793 219 0.2047 0.2246 REMARK 3 26 1.1700 - 1.1500 1.00 4732 248 0.2141 0.2117 REMARK 3 27 1.1500 - 1.1400 1.00 4733 266 0.2230 0.2385 REMARK 3 28 1.1400 - 1.1300 1.00 4697 276 0.2342 0.2733 REMARK 3 29 1.1300 - 1.1100 1.00 4729 239 0.2450 0.2587 REMARK 3 30 1.1100 - 1.1000 0.99 4746 263 0.2623 0.2596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.098 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.987 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3352 REMARK 3 ANGLE : 1.265 4587 REMARK 3 CHIRALITY : 0.090 506 REMARK 3 PLANARITY : 0.010 607 REMARK 3 DIHEDRAL : 17.413 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6245 5.5972 -17.0649 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.0524 REMARK 3 T33: 0.0548 T12: 0.0004 REMARK 3 T13: 0.0005 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2484 L22: 0.3408 REMARK 3 L33: 0.3061 L12: -0.0921 REMARK 3 L13: 0.0251 L23: -0.0085 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0014 S13: 0.0121 REMARK 3 S21: 0.0307 S22: 0.0106 S23: -0.0211 REMARK 3 S31: -0.0186 S32: 0.0357 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4120 15.9084 -5.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0890 REMARK 3 T33: 0.0676 T12: 0.0006 REMARK 3 T13: -0.0062 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.1257 L22: 0.1820 REMARK 3 L33: 0.2394 L12: 0.1170 REMARK 3 L13: 0.0046 L23: 0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0012 S13: 0.0682 REMARK 3 S21: 0.0638 S22: -0.0027 S23: -0.0320 REMARK 3 S31: -0.0406 S32: 0.1249 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7274 2.6070 -24.0639 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0633 REMARK 3 T33: 0.0690 T12: -0.0105 REMARK 3 T13: 0.0017 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1262 L22: 0.5034 REMARK 3 L33: 0.2858 L12: -0.1925 REMARK 3 L13: 0.0408 L23: -0.0747 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0084 S13: 0.0182 REMARK 3 S21: -0.0107 S22: -0.0075 S23: -0.0552 REMARK 3 S31: 0.0132 S32: 0.0383 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9712 21.1997 -28.7671 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.0514 REMARK 3 T33: 0.0699 T12: -0.0033 REMARK 3 T13: -0.0040 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.4452 L22: 0.4109 REMARK 3 L33: 0.0394 L12: -0.0768 REMARK 3 L13: 0.0055 L23: -0.0942 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0012 S13: 0.0727 REMARK 3 S21: -0.0013 S22: -0.0264 S23: 0.0024 REMARK 3 S31: -0.0188 S32: 0.0228 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9081 24.7770 -27.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0564 REMARK 3 T33: 0.0800 T12: 0.0043 REMARK 3 T13: -0.0007 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.4357 L22: 0.6063 REMARK 3 L33: 0.1889 L12: -0.0679 REMARK 3 L13: 0.2203 L23: -0.1643 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0028 S13: 0.0865 REMARK 3 S21: -0.0164 S22: 0.0191 S23: 0.0119 REMARK 3 S31: -0.0940 S32: -0.0096 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8619 27.0263 -35.2479 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0992 REMARK 3 T33: 0.1021 T12: -0.0118 REMARK 3 T13: -0.0035 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.1222 L22: 0.0921 REMARK 3 L33: 0.0961 L12: 0.0690 REMARK 3 L13: -0.0839 L23: 0.0330 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.1390 S13: 0.1498 REMARK 3 S21: -0.1301 S22: 0.0699 S23: 0.0736 REMARK 3 S31: -0.1336 S32: -0.0161 S33: 0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9966 4.4179 -28.6141 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0520 REMARK 3 T33: 0.0573 T12: -0.0051 REMARK 3 T13: 0.0025 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.2884 L22: 0.2500 REMARK 3 L33: 0.1934 L12: -0.1738 REMARK 3 L13: -0.0260 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.0215 S13: 0.0217 REMARK 3 S21: -0.0027 S22: 0.0000 S23: -0.0185 REMARK 3 S31: -0.0042 S32: 0.0128 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8547 -6.4249 -41.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0910 REMARK 3 T33: 0.0659 T12: 0.0102 REMARK 3 T13: 0.0050 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1878 L22: 0.1644 REMARK 3 L33: 0.0562 L12: -0.1223 REMARK 3 L13: -0.0191 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.1000 S13: -0.0105 REMARK 3 S21: -0.1207 S22: -0.0627 S23: 0.0010 REMARK 3 S31: 0.0772 S32: 0.0971 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1218 -5.8489 -39.6207 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1091 REMARK 3 T33: 0.1014 T12: 0.0119 REMARK 3 T13: 0.0189 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1628 L22: 0.1355 REMARK 3 L33: 0.1669 L12: -0.0375 REMARK 3 L13: -0.0899 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.1194 S13: -0.0389 REMARK 3 S21: -0.0738 S22: -0.0273 S23: -0.0786 REMARK 3 S31: 0.1350 S32: 0.0740 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4325 7.4521 -30.1915 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0845 REMARK 3 T33: 0.0948 T12: -0.0134 REMARK 3 T13: 0.0099 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3463 L22: 0.3307 REMARK 3 L33: 0.2253 L12: 0.0708 REMARK 3 L13: 0.1253 L23: -0.1800 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: 0.0475 S13: 0.0752 REMARK 3 S21: -0.0549 S22: 0.0210 S23: -0.1238 REMARK 3 S31: -0.0747 S32: 0.0824 S33: -0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2P02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 0.1 M TRIS PH 8.4, 20% PEG REMARK 280 6000, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.09750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.18800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.10400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.09750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.18800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.10400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.09750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.18800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.10400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.09750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.18800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.10400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 635 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 702 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 901 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 932 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1033 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 PHE A 12 REMARK 465 ILE A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 373 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 177 O HOH A 505 1.51 REMARK 500 O HOH A 806 O HOH A 822 1.84 REMARK 500 O HOH A 676 O HOH A 727 1.84 REMARK 500 O HOH A 545 O HOH A 908 1.88 REMARK 500 O HOH A 808 O HOH A 825 1.95 REMARK 500 O HOH A 528 O HOH A 643 1.96 REMARK 500 O HOH A 565 O HOH A 791 1.99 REMARK 500 O HOH A 806 O HOH A 841 1.99 REMARK 500 O HOH A 681 O HOH A 931 2.01 REMARK 500 O HOH A 934 O HOH A 1014 2.02 REMARK 500 O HOH A 582 O HOH A 834 2.03 REMARK 500 O HOH A 755 O HOH A 789 2.04 REMARK 500 OD1 ASP A 383 O HOH A 501 2.09 REMARK 500 O HOH A 571 O HOH A 714 2.10 REMARK 500 O HOH A 550 O HOH A 754 2.11 REMARK 500 O HOH A 735 O HOH A 867 2.11 REMARK 500 O HOH A 845 O HOH A 938 2.14 REMARK 500 O HOH A 522 O HOH A 593 2.15 REMARK 500 O HOH A 727 O HOH A 846 2.16 REMARK 500 O HOH A 505 O HOH A 851 2.16 REMARK 500 O HOH A 696 O HOH A 775 2.17 REMARK 500 NH2 ARG A 177 O HOH A 502 2.17 REMARK 500 O HOH A 569 O HOH A 878 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 105 HD22 ASN A 105 3555 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 219 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 149 33.66 70.01 REMARK 500 THR A 270 -100.01 -117.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J4A A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KCC RELATED DB: PDB REMARK 900 7KCC CONTAINS THE SAME PROTEIN COMPLEXED WITH COMPOUND AGI-270 REMARK 900 RELATED ID: 7KCE RELATED DB: PDB REMARK 900 7KCE CONTAINS THE SAME PROTEIN COMPLEXED WITH COMPOUND 2 REMARK 900 RELATED ID: 7KDA RELATED DB: PDB REMARK 900 RELATED ID: 7KDB RELATED DB: PDB DBREF 7KCF A 1 395 UNP P31153 METK2_HUMAN 1 395 SEQADV 7KCF SER A 0 UNP P31153 EXPRESSION TAG SEQRES 1 A 396 SER MET ASN GLY GLN LEU ASN GLY PHE HIS GLU ALA PHE SEQRES 2 A 396 ILE GLU GLU GLY THR PHE LEU PHE THR SER GLU SER VAL SEQRES 3 A 396 GLY GLU GLY HIS PRO ASP LYS ILE CYS ASP GLN ILE SER SEQRES 4 A 396 ASP ALA VAL LEU ASP ALA HIS LEU GLN GLN ASP PRO ASP SEQRES 5 A 396 ALA LYS VAL ALA CYS GLU THR VAL ALA LYS THR GLY MET SEQRES 6 A 396 ILE LEU LEU ALA GLY GLU ILE THR SER ARG ALA ALA VAL SEQRES 7 A 396 ASP TYR GLN LYS VAL VAL ARG GLU ALA VAL LYS HIS ILE SEQRES 8 A 396 GLY TYR ASP ASP SER SER LYS GLY PHE ASP TYR LYS THR SEQRES 9 A 396 CYS ASN VAL LEU VAL ALA LEU GLU GLN GLN SER PRO ASP SEQRES 10 A 396 ILE ALA GLN GLY VAL HIS LEU ASP ARG ASN GLU GLU ASP SEQRES 11 A 396 ILE GLY ALA GLY ASP GLN GLY LEU MET PHE GLY TYR ALA SEQRES 12 A 396 THR ASP GLU THR GLU GLU CYS MET PRO LEU THR ILE VAL SEQRES 13 A 396 LEU ALA HIS LYS LEU ASN ALA LYS LEU ALA GLU LEU ARG SEQRES 14 A 396 ARG ASN GLY THR LEU PRO TRP LEU ARG PRO ASP SER LYS SEQRES 15 A 396 THR GLN VAL THR VAL GLN TYR MET GLN ASP ARG GLY ALA SEQRES 16 A 396 VAL LEU PRO ILE ARG VAL HIS THR ILE VAL ILE SER VAL SEQRES 17 A 396 GLN HIS ASP GLU GLU VAL CYS LEU ASP GLU MET ARG ASP SEQRES 18 A 396 ALA LEU LYS GLU LYS VAL ILE LYS ALA VAL VAL PRO ALA SEQRES 19 A 396 LYS TYR LEU ASP GLU ASP THR ILE TYR HIS LEU GLN PRO SEQRES 20 A 396 SER GLY ARG PHE VAL ILE GLY GLY PRO GLN GLY ASP ALA SEQRES 21 A 396 GLY LEU THR GLY ARG LYS ILE ILE VAL ASP THR TYR GLY SEQRES 22 A 396 GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SER GLY LYS SEQRES 23 A 396 ASP TYR THR LYS VAL ASP ARG SER ALA ALA TYR ALA ALA SEQRES 24 A 396 ARG TRP VAL ALA LYS SER LEU VAL LYS GLY GLY LEU CYS SEQRES 25 A 396 ARG ARG VAL LEU VAL GLN VAL SER TYR ALA ILE GLY VAL SEQRES 26 A 396 SER HIS PRO LEU SER ILE SER ILE PHE HIS TYR GLY THR SEQRES 27 A 396 SER GLN LYS SER GLU ARG GLU LEU LEU GLU ILE VAL LYS SEQRES 28 A 396 LYS ASN PHE ASP LEU ARG PRO GLY VAL ILE VAL ARG ASP SEQRES 29 A 396 LEU ASP LEU LYS LYS PRO ILE TYR GLN ARG THR ALA ALA SEQRES 30 A 396 TYR GLY HIS PHE GLY ARG ASP SER PHE PRO TRP GLU VAL SEQRES 31 A 396 PRO LYS LYS LEU LYS TYR HET J4A A 401 54 HET SAM A 402 48 HET EDO A 403 7 HET EDO A 404 10 HET EDO A 405 10 HET GOL A 406 28 HETNAM J4A 6-(4-HYDROXYPHENYL)-5-METHYL-2-PHENYL-3-(PIPERIDIN-1- HETNAM 2 J4A YL)PYRAZOLO[1,5-A]PYRIMIDIN-7(4H)-ONE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 J4A C24 H24 N4 O2 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *544(H2 O) HELIX 1 AA1 HIS A 29 ASP A 49 1 21 HELIX 2 AA2 ASP A 78 GLY A 91 1 14 HELIX 3 AA3 SER A 95 GLY A 98 5 4 HELIX 4 AA4 SER A 114 HIS A 122 1 9 HELIX 5 AA5 ASN A 126 ILE A 130 5 5 HELIX 6 AA6 PRO A 151 ASN A 170 1 20 HELIX 7 AA7 CYS A 214 LYS A 225 1 12 HELIX 8 AA8 VAL A 226 VAL A 231 1 6 HELIX 9 AA9 PRO A 232 LEU A 236 5 5 HELIX 10 AB1 GLY A 253 GLY A 257 5 5 HELIX 11 AB2 LYS A 289 GLY A 308 1 20 HELIX 12 AB3 SER A 341 PHE A 353 1 13 HELIX 13 AB4 ARG A 356 ASP A 365 1 10 HELIX 14 AB5 ILE A 370 ALA A 375 5 6 HELIX 15 AB6 PHE A 385 VAL A 389 5 5 SHEET 1 AA1 4 THR A 17 VAL A 25 0 SHEET 2 AA1 4 LEU A 176 ASP A 191 -1 O TYR A 188 N PHE A 18 SHEET 3 AA1 4 ALA A 194 HIS A 209 -1 O ILE A 198 N GLN A 187 SHEET 4 AA1 4 ILE A 241 LEU A 244 1 O HIS A 243 N ILE A 203 SHEET 1 AA2 4 ASN A 105 GLU A 111 0 SHEET 2 AA2 4 MET A 64 THR A 72 1 N LEU A 67 O ALA A 109 SHEET 3 AA2 4 LYS A 53 LYS A 61 -1 N LYS A 53 O THR A 72 SHEET 4 AA2 4 GLY A 260 LEU A 261 -1 O GLY A 260 N ALA A 60 SHEET 1 AA3 2 ASP A 93 ASP A 94 0 SHEET 2 AA3 2 PHE A 99 ASP A 100 -1 O PHE A 99 N ASP A 94 SHEET 1 AA4 3 GLY A 136 THR A 143 0 SHEET 2 AA4 3 ARG A 313 TYR A 320 -1 O VAL A 316 N GLY A 140 SHEET 3 AA4 3 SER A 329 PHE A 333 -1 O SER A 331 N GLN A 317 SITE 1 AC1 16 PHE A 18 PHE A 20 GLN A 190 ARG A 192 SITE 2 AC1 16 GLY A 193 ALA A 194 GLY A 273 ARG A 313 SITE 3 AC1 16 LEU A 315 SER A 331 PHE A 333 GLU A 342 SITE 4 AC1 16 EDO A 405 HOH A 622 HOH A 662 HOH A 810 SITE 1 AC2 21 HIS A 29 PRO A 30 ALA A 55 GLU A 70 SITE 2 AC2 21 GLN A 113 ASP A 116 ILE A 117 GLY A 133 SITE 3 AC2 21 ASP A 134 ASP A 179 LYS A 181 SER A 247 SITE 4 AC2 21 ARG A 249 PHE A 250 ASP A 258 LYS A 289 SITE 5 AC2 21 HOH A 626 HOH A 652 HOH A 686 HOH A 695 SITE 6 AC2 21 HOH A 771 SITE 1 AC3 7 GLU A 15 GLY A 16 THR A 17 GLU A 342 SITE 2 AC3 7 ARG A 343 HOH A 592 HOH A 697 SITE 1 AC4 3 PRO A 50 LYS A 368 HOH A 522 SITE 1 AC5 7 GLY A 193 PHE A 333 TYR A 335 J4A A 401 SITE 2 AC5 7 HOH A 583 HOH A 680 HOH A 779 SITE 1 AC6 8 GLU A 85 ALA A 86 HIS A 89 GLN A 372 SITE 2 AC6 8 HOH A 504 HOH A 659 HOH A 767 HOH A 800 CRYST1 68.195 94.376 116.208 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008605 0.00000