HEADER LIGASE 07-OCT-20 7KCT TITLE CRYSTAL STRUCTURE OF THE HYDROGENOBACTER THERMOPHILUS 2-OXOGLUTARATE TITLE 2 CARBOXYLASE (OGC) BIOTIN CARBOXYLASE (BC) DOMAIN DIMER IN COMPLEX TITLE 3 WITH ADENOSINE 5'-DIPHOSPHATE MAGNESIUM SALT (MGADP), ADENOSINE 5'- TITLE 4 DIPHOSPHATE (ADP, AND BICARBONATE ANION (HYDROGEN CARBONATE/HCO3-) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE CARBOXYLASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-OXOGLUTARATE CARBOXYLASE BETA SUBUNIT; COMPND 5 EC: 6.4.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 940; SOURCE 4 GENE: CFIB, HTH_1393, HYDTH_1383; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE1 KEYWDS BIOTIN CARBOXYLASE, BIOTIN-DEPENDENT CARBOXYLASE, PYRUVATE KEYWDS 2 CARBOXYLASE, ATP-GRASP, AQUIFICALES, RTCA, DIMER INTERFACE, KEYWDS 3 BICARBONATE, SEQUENCE DETERMINING POSITIONS, STRUCTURAL WATERS, KEYWDS 4 THERMOPHILE, CARBON FIXATION, THERMOPHILIC PROTEIN, DIMER, WET KEYWDS 5 INTERFACE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.K.BUHRMAN,R.B.ROSE,P.ENRIQUEZ,V.TRUONG REVDAT 3 18-OCT-23 7KCT 1 REMARK REVDAT 2 17-FEB-21 7KCT 1 JRNL REVDAT 1 27-JAN-21 7KCT 0 JRNL AUTH G.BUHRMAN,P.ENRIQUEZ,L.DILLARD,H.BAER,V.TRUONG,A.M.GRUNDEN, JRNL AUTH 2 R.B.ROSE JRNL TITL STRUCTURE, FUNCTION, AND THERMAL ADAPTATION OF THE BIOTIN JRNL TITL 2 CARBOXYLASE DOMAIN DIMER FROM HYDROGENOBACTER THERMOPHILUS JRNL TITL 3 2-OXOGLUTARATE CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 60 324 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 33464881 JRNL DOI 10.1021/ACS.BIOCHEM.0C00815 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 60552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.330 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1100 - 4.8600 0.98 4430 151 0.1673 0.1717 REMARK 3 2 4.8600 - 3.8600 0.98 4369 148 0.1411 0.1859 REMARK 3 3 3.8600 - 3.3700 0.97 4279 155 0.1656 0.2253 REMARK 3 4 3.3700 - 3.0700 0.98 4366 145 0.1835 0.2451 REMARK 3 5 3.0700 - 2.8500 0.99 4385 150 0.1896 0.2277 REMARK 3 6 2.8500 - 2.6800 0.99 4383 151 0.1804 0.2336 REMARK 3 7 2.6800 - 2.5400 0.94 4152 145 0.1858 0.2546 REMARK 3 8 2.5400 - 2.4300 0.89 3913 133 0.1942 0.2351 REMARK 3 9 2.4300 - 2.3400 0.92 4058 143 0.1799 0.2068 REMARK 3 10 2.3400 - 2.2600 0.93 4077 140 0.1792 0.2323 REMARK 3 11 2.2600 - 2.1900 0.94 4122 147 0.1813 0.2403 REMARK 3 12 2.1900 - 2.1300 0.95 4178 140 0.1843 0.2414 REMARK 3 13 2.1300 - 2.0700 0.93 4117 142 0.1988 0.2562 REMARK 3 14 2.0700 - 2.0200 0.85 3709 124 0.2042 0.2911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.908 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7228 REMARK 3 ANGLE : 1.587 9811 REMARK 3 CHIRALITY : 0.078 1087 REMARK 3 PLANARITY : 0.009 1244 REMARK 3 DIHEDRAL : 19.178 2639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14900 REMARK 200 FOR THE DATA SET : 36.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22100 REMARK 200 FOR SHELL : 4.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7KBL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 5.0 AND 12% REMARK 280 W/V PEG 3,350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.43900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 LYS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A 452 REMARK 465 ARG A 453 REMARK 465 ASP A 454 REMARK 465 LYS A 455 REMARK 465 GLU A 456 REMARK 465 ASP A 457 REMARK 465 PHE A 458 REMARK 465 VAL A 459 REMARK 465 ALA A 460 REMARK 465 PHE A 461 REMARK 465 ILE A 462 REMARK 465 SER A 463 REMARK 465 ALA A 464 REMARK 465 VAL A 465 REMARK 465 ILE A 466 REMARK 465 ALA A 467 REMARK 465 SER A 468 REMARK 465 TYR A 469 REMARK 465 HIS A 470 REMARK 465 GLY A 471 REMARK 465 LEU A 472 REMARK 465 MET B -8 REMARK 465 LYS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B 452 REMARK 465 ARG B 453 REMARK 465 ASP B 454 REMARK 465 LYS B 455 REMARK 465 GLU B 456 REMARK 465 ASP B 457 REMARK 465 PHE B 458 REMARK 465 VAL B 459 REMARK 465 ALA B 460 REMARK 465 PHE B 461 REMARK 465 ILE B 462 REMARK 465 SER B 463 REMARK 465 ALA B 464 REMARK 465 VAL B 465 REMARK 465 ILE B 466 REMARK 465 ALA B 467 REMARK 465 SER B 468 REMARK 465 TYR B 469 REMARK 465 HIS B 470 REMARK 465 GLY B 471 REMARK 465 LEU B 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 0 CG CD OE1 NE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 GLU A 88 CD OE1 OE2 REMARK 470 GLU A 96 CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 VAL A 140 CG1 CG2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LYS A 189 CE NZ REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 345 CD CE NZ REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 ARG A 356 CZ NH1 NH2 REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 ASP A 382 CG OD1 OD2 REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 HIS B -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 0 CG CD OE1 NE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 ARG B 124 NE CZ NH1 NH2 REMARK 470 ASP B 134 CG OD1 OD2 REMARK 470 ILE B 136 CG1 CG2 CD1 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 VAL B 140 CG1 CG2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 ARG B 145 CZ NH1 NH2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 GLU B 174 CB CG CD OE1 OE2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 179 CG OD1 ND2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ASN B 182 CG OD1 ND2 REMARK 470 ASN B 185 CG OD1 ND2 REMARK 470 VAL B 188 CG1 CG2 REMARK 470 LYS B 189 CD CE NZ REMARK 470 PHE B 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 LEU B 196 CG CD1 CD2 REMARK 470 GLU B 239 CD OE1 OE2 REMARK 470 ARG B 321 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 ARG B 328 NE CZ NH1 NH2 REMARK 470 LYS B 345 CD CE NZ REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 470 ARG B 438 NE CZ NH1 NH2 REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 470 GLU B 451 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 83 -114.33 47.07 REMARK 500 ALA A 160 33.86 -90.77 REMARK 500 SER A 269 -162.72 78.94 REMARK 500 ARG A 321 33.86 -87.31 REMARK 500 LYS A 345 51.68 -113.42 REMARK 500 GLU A 355 -87.97 -102.70 REMARK 500 ASP A 382 153.25 -49.44 REMARK 500 ASN B 9 -169.21 -163.58 REMARK 500 PHE B 83 -110.73 42.49 REMARK 500 ASP B 134 53.10 -100.13 REMARK 500 SER B 269 -165.92 76.34 REMARK 500 ARG B 321 30.19 -79.12 REMARK 500 LYS B 345 47.41 -106.97 REMARK 500 GLU B 355 -87.28 -109.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 274 OE2 REMARK 620 2 GLU A 287 OE2 75.7 REMARK 620 3 ADP A 501 O2B 166.6 108.0 REMARK 620 4 ADP A 501 O1A 88.7 98.2 78.1 REMARK 620 5 HOH A 617 O 93.0 161.6 86.3 96.0 REMARK 620 6 HOH A 658 O 88.1 81.7 105.1 176.7 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 274 OE1 REMARK 620 2 GLU B 287 OE2 85.6 REMARK 620 3 ADP B 502 O2B 155.9 90.0 REMARK 620 4 ADP B 502 O2A 84.8 88.0 71.4 REMARK 620 5 HOH B 640 O 95.0 85.6 108.3 173.7 REMARK 620 6 HOH B 723 O 85.9 171.5 97.7 91.2 95.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KBL RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX BUT THE LIGAND IS ONLY BICARBONATE REMARK 900 RELATED ID: 7KC7 RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX BUT THE LIGAND IS PHOSPHATE, ADP REMARK 900 AND NO CATION DBREF 7KCT A 1 472 UNP D3DJ42 2OCS_HYDTT 1 472 DBREF 7KCT B 1 472 UNP D3DJ42 2OCS_HYDTT 1 472 SEQADV 7KCT MET A -8 UNP D3DJ42 INITIATING METHIONINE SEQADV 7KCT LYS A -7 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -6 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -5 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -4 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -3 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -2 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS A -1 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT GLN A 0 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT MET B -8 UNP D3DJ42 INITIATING METHIONINE SEQADV 7KCT LYS B -7 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -6 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -5 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -4 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -3 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -2 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT HIS B -1 UNP D3DJ42 EXPRESSION TAG SEQADV 7KCT GLN B 0 UNP D3DJ42 EXPRESSION TAG SEQRES 1 A 481 MET LYS HIS HIS HIS HIS HIS HIS GLN MET PHE LYS LYS SEQRES 2 A 481 VAL LEU VAL ALA ASN ARG GLY GLU ILE ALA CYS ARG VAL SEQRES 3 A 481 ILE ARG ALA CYS LYS GLU LEU GLY ILE GLN THR VAL ALA SEQRES 4 A 481 ILE TYR ASN GLU ILE GLU SER THR ALA ARG HIS VAL LYS SEQRES 5 A 481 MET ALA ASP GLU ALA TYR MET ILE GLY VAL ASN PRO LEU SEQRES 6 A 481 ASP THR TYR LEU ASN ALA GLU ARG ILE VAL ASP LEU ALA SEQRES 7 A 481 LEU GLU VAL GLY ALA GLU ALA ILE HIS PRO GLY TYR GLY SEQRES 8 A 481 PHE LEU ALA GLU ASN GLU HIS PHE ALA ARG LEU CYS GLU SEQRES 9 A 481 GLU LYS GLY ILE THR PHE ILE GLY PRO HIS TRP LYS VAL SEQRES 10 A 481 ILE GLU LEU MET GLY ASP LYS ALA ARG SER LYS GLU VAL SEQRES 11 A 481 MET LYS ARG ALA GLY VAL PRO THR VAL PRO GLY SER ASP SEQRES 12 A 481 GLY ILE LEU LYS ASP VAL GLU GLU ALA LYS ARG ILE ALA SEQRES 13 A 481 LYS GLU ILE GLY TYR PRO VAL LEU LEU LYS ALA SER ALA SEQRES 14 A 481 GLY GLY GLY GLY ARG GLY ILE ARG ILE CYS ARG ASN GLU SEQRES 15 A 481 GLU GLU LEU VAL ARG ASN TYR GLU ASN ALA TYR ASN GLU SEQRES 16 A 481 ALA VAL LYS ALA PHE GLY ARG GLY ASP LEU LEU LEU GLU SEQRES 17 A 481 LYS TYR ILE GLU ASN PRO LYS HIS ILE GLU PHE GLN VAL SEQRES 18 A 481 LEU GLY ASP LYS TYR GLY ASN VAL ILE HIS LEU GLY GLU SEQRES 19 A 481 ARG ASP CYS SER ILE GLN ARG ARG ASN GLN LYS LEU VAL SEQRES 20 A 481 GLU ILE ALA PRO SER LEU LEU LEU THR PRO GLU GLN ARG SEQRES 21 A 481 GLU TYR TYR GLY SER LEU VAL VAL LYS ALA ALA LYS GLU SEQRES 22 A 481 ILE GLY TYR TYR SER ALA GLY THR MET GLU PHE ILE ALA SEQRES 23 A 481 ASP GLU LYS GLY ASN LEU TYR PHE ILE GLU MET ASN THR SEQRES 24 A 481 ARG ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR SEQRES 25 A 481 GLY VAL ASP ILE VAL LYS TRP GLN ILE ARG ILE ALA ALA SEQRES 26 A 481 GLY GLU ARG LEU ARG TYR SER GLN GLU ASP ILE ARG PHE SEQRES 27 A 481 ASN GLY TYR SER ILE GLU CYS ARG ILE ASN ALA GLU ASP SEQRES 28 A 481 PRO LYS LYS GLY PHE ALA PRO SER ILE GLY THR ILE GLU SEQRES 29 A 481 ARG TYR TYR VAL PRO GLY GLY PHE GLY ILE ARG VAL GLU SEQRES 30 A 481 HIS ALA SER SER LYS GLY TYR GLU ILE THR PRO TYR TYR SEQRES 31 A 481 ASP SER LEU ILE ALA LYS LEU ILE VAL TRP ALA PRO LEU SEQRES 32 A 481 TRP GLU VAL ALA VAL ASP ARG MET ARG SER ALA LEU GLU SEQRES 33 A 481 THR TYR GLU ILE SER GLY VAL LYS THR THR ILE PRO LEU SEQRES 34 A 481 LEU ILE ASN ILE MET LYS ASP LYS ASP PHE ARG ASP GLY SEQRES 35 A 481 LYS PHE THR THR ARG TYR LEU GLU GLU HIS PRO HIS VAL SEQRES 36 A 481 PHE ASP TYR ALA GLU HIS ARG ASP LYS GLU ASP PHE VAL SEQRES 37 A 481 ALA PHE ILE SER ALA VAL ILE ALA SER TYR HIS GLY LEU SEQRES 1 B 481 MET LYS HIS HIS HIS HIS HIS HIS GLN MET PHE LYS LYS SEQRES 2 B 481 VAL LEU VAL ALA ASN ARG GLY GLU ILE ALA CYS ARG VAL SEQRES 3 B 481 ILE ARG ALA CYS LYS GLU LEU GLY ILE GLN THR VAL ALA SEQRES 4 B 481 ILE TYR ASN GLU ILE GLU SER THR ALA ARG HIS VAL LYS SEQRES 5 B 481 MET ALA ASP GLU ALA TYR MET ILE GLY VAL ASN PRO LEU SEQRES 6 B 481 ASP THR TYR LEU ASN ALA GLU ARG ILE VAL ASP LEU ALA SEQRES 7 B 481 LEU GLU VAL GLY ALA GLU ALA ILE HIS PRO GLY TYR GLY SEQRES 8 B 481 PHE LEU ALA GLU ASN GLU HIS PHE ALA ARG LEU CYS GLU SEQRES 9 B 481 GLU LYS GLY ILE THR PHE ILE GLY PRO HIS TRP LYS VAL SEQRES 10 B 481 ILE GLU LEU MET GLY ASP LYS ALA ARG SER LYS GLU VAL SEQRES 11 B 481 MET LYS ARG ALA GLY VAL PRO THR VAL PRO GLY SER ASP SEQRES 12 B 481 GLY ILE LEU LYS ASP VAL GLU GLU ALA LYS ARG ILE ALA SEQRES 13 B 481 LYS GLU ILE GLY TYR PRO VAL LEU LEU LYS ALA SER ALA SEQRES 14 B 481 GLY GLY GLY GLY ARG GLY ILE ARG ILE CYS ARG ASN GLU SEQRES 15 B 481 GLU GLU LEU VAL ARG ASN TYR GLU ASN ALA TYR ASN GLU SEQRES 16 B 481 ALA VAL LYS ALA PHE GLY ARG GLY ASP LEU LEU LEU GLU SEQRES 17 B 481 LYS TYR ILE GLU ASN PRO LYS HIS ILE GLU PHE GLN VAL SEQRES 18 B 481 LEU GLY ASP LYS TYR GLY ASN VAL ILE HIS LEU GLY GLU SEQRES 19 B 481 ARG ASP CYS SER ILE GLN ARG ARG ASN GLN LYS LEU VAL SEQRES 20 B 481 GLU ILE ALA PRO SER LEU LEU LEU THR PRO GLU GLN ARG SEQRES 21 B 481 GLU TYR TYR GLY SER LEU VAL VAL LYS ALA ALA LYS GLU SEQRES 22 B 481 ILE GLY TYR TYR SER ALA GLY THR MET GLU PHE ILE ALA SEQRES 23 B 481 ASP GLU LYS GLY ASN LEU TYR PHE ILE GLU MET ASN THR SEQRES 24 B 481 ARG ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR SEQRES 25 B 481 GLY VAL ASP ILE VAL LYS TRP GLN ILE ARG ILE ALA ALA SEQRES 26 B 481 GLY GLU ARG LEU ARG TYR SER GLN GLU ASP ILE ARG PHE SEQRES 27 B 481 ASN GLY TYR SER ILE GLU CYS ARG ILE ASN ALA GLU ASP SEQRES 28 B 481 PRO LYS LYS GLY PHE ALA PRO SER ILE GLY THR ILE GLU SEQRES 29 B 481 ARG TYR TYR VAL PRO GLY GLY PHE GLY ILE ARG VAL GLU SEQRES 30 B 481 HIS ALA SER SER LYS GLY TYR GLU ILE THR PRO TYR TYR SEQRES 31 B 481 ASP SER LEU ILE ALA LYS LEU ILE VAL TRP ALA PRO LEU SEQRES 32 B 481 TRP GLU VAL ALA VAL ASP ARG MET ARG SER ALA LEU GLU SEQRES 33 B 481 THR TYR GLU ILE SER GLY VAL LYS THR THR ILE PRO LEU SEQRES 34 B 481 LEU ILE ASN ILE MET LYS ASP LYS ASP PHE ARG ASP GLY SEQRES 35 B 481 LYS PHE THR THR ARG TYR LEU GLU GLU HIS PRO HIS VAL SEQRES 36 B 481 PHE ASP TYR ALA GLU HIS ARG ASP LYS GLU ASP PHE VAL SEQRES 37 B 481 ALA PHE ILE SER ALA VAL ILE ALA SER TYR HIS GLY LEU HET ADP A 501 39 HET ADP A 502 39 HET MG A 503 1 HET BCT A 504 5 HET ADP B 501 39 HET ADP B 502 39 HET MG B 503 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BCT BICARBONATE ION FORMUL 3 ADP 4(C10 H15 N5 O10 P2) FORMUL 5 MG 2(MG 2+) FORMUL 6 BCT C H O3 1- FORMUL 10 HOH *310(H2 O) HELIX 1 AA1 ARG A 10 LEU A 24 1 15 HELIX 2 AA2 ASN A 33 SER A 37 5 5 HELIX 3 AA3 ALA A 39 ALA A 45 1 7 HELIX 4 AA4 LEU A 56 ASN A 61 1 6 HELIX 5 AA5 ASN A 61 GLY A 73 1 13 HELIX 6 AA6 ASN A 87 LYS A 97 1 11 HELIX 7 AA7 HIS A 105 MET A 112 1 8 HELIX 8 AA8 ASP A 114 ALA A 125 1 12 HELIX 9 AA9 ASP A 139 GLY A 151 1 13 HELIX 10 AB1 ASN A 172 GLY A 192 1 21 HELIX 11 AB2 THR A 247 ILE A 265 1 19 HELIX 12 AB3 GLU A 295 GLY A 304 1 10 HELIX 13 AB4 ASP A 306 ALA A 316 1 11 HELIX 14 AB5 SER A 323 ILE A 327 5 5 HELIX 15 AB6 ASP A 342 GLY A 346 5 5 HELIX 16 AB7 LEU A 394 TYR A 409 1 16 HELIX 17 AB8 THR A 417 ASP A 427 1 11 HELIX 18 AB9 ASP A 427 ASP A 432 1 6 HELIX 19 AC1 ARG A 438 HIS A 443 1 6 HELIX 20 AC2 PRO A 444 ASP A 448 5 5 HELIX 21 AC3 ARG B 10 LEU B 24 1 15 HELIX 22 AC4 ASN B 33 SER B 37 5 5 HELIX 23 AC5 ALA B 39 ALA B 45 1 7 HELIX 24 AC6 LEU B 56 ASN B 61 1 6 HELIX 25 AC7 ASN B 61 GLY B 73 1 13 HELIX 26 AC8 ASN B 87 LYS B 97 1 11 HELIX 27 AC9 HIS B 105 ASP B 114 1 10 HELIX 28 AD1 ASP B 114 ALA B 125 1 12 HELIX 29 AD2 ASP B 139 GLY B 151 1 13 HELIX 30 AD3 ASN B 172 PHE B 191 1 20 HELIX 31 AD4 THR B 247 ILE B 265 1 19 HELIX 32 AD5 HIS B 296 GLY B 304 1 9 HELIX 33 AD6 ASP B 306 ALA B 316 1 11 HELIX 34 AD7 SER B 323 ILE B 327 5 5 HELIX 35 AD8 ASP B 342 GLY B 346 5 5 HELIX 36 AD9 LEU B 394 TYR B 409 1 16 HELIX 37 AE1 THR B 417 ASP B 427 1 11 HELIX 38 AE2 ASP B 427 GLY B 433 1 7 HELIX 39 AE3 ARG B 438 HIS B 443 1 6 HELIX 40 AE4 PRO B 444 ASP B 448 5 5 SHEET 1 AA1 5 GLU A 47 MET A 50 0 SHEET 2 AA1 5 GLN A 27 TYR A 32 1 N ALA A 30 O GLU A 47 SHEET 3 AA1 5 LYS A 4 VAL A 7 1 N VAL A 5 O GLN A 27 SHEET 4 AA1 5 ALA A 76 HIS A 78 1 O HIS A 78 N LEU A 6 SHEET 5 AA1 5 THR A 100 PHE A 101 1 O THR A 100 N ILE A 77 SHEET 1 AA2 3 ILE A 167 CYS A 170 0 SHEET 2 AA2 3 VAL A 154 ALA A 158 -1 N VAL A 154 O CYS A 170 SHEET 3 AA2 3 LEU A 196 LYS A 200 -1 O GLU A 199 N LEU A 155 SHEET 1 AA3 4 VAL A 220 ASP A 227 0 SHEET 2 AA3 4 LYS A 206 GLY A 214 -1 N GLN A 211 O LEU A 223 SHEET 3 AA3 4 SER A 269 ALA A 277 -1 O SER A 269 N GLY A 214 SHEET 4 AA3 4 LEU A 283 ASN A 289 -1 O GLU A 287 N GLU A 274 SHEET 1 AA4 2 GLN A 231 ARG A 232 0 SHEET 2 AA4 2 GLN A 235 LYS A 236 -1 O GLN A 235 N ARG A 232 SHEET 1 AA5 4 VAL A 238 ALA A 241 0 SHEET 2 AA5 4 TYR A 332 ASN A 339 -1 O GLU A 335 N GLU A 239 SHEET 3 AA5 4 LEU A 384 ALA A 392 -1 O ILE A 385 N ILE A 338 SHEET 4 AA5 4 ILE A 365 HIS A 369 -1 N ARG A 366 O ILE A 389 SHEET 1 AA6 2 GLY A 352 THR A 353 0 SHEET 2 AA6 2 GLU A 376 ILE A 377 -1 O ILE A 377 N GLY A 352 SHEET 1 AA7 2 TYR A 357 TYR A 358 0 SHEET 2 AA7 2 GLU A 410 ILE A 411 -1 O GLU A 410 N TYR A 358 SHEET 1 AA8 5 GLU B 47 MET B 50 0 SHEET 2 AA8 5 GLN B 27 TYR B 32 1 N ALA B 30 O GLU B 47 SHEET 3 AA8 5 LYS B 4 VAL B 7 1 N VAL B 7 O VAL B 29 SHEET 4 AA8 5 ALA B 76 HIS B 78 1 O ALA B 76 N LEU B 6 SHEET 5 AA8 5 THR B 100 PHE B 101 1 O THR B 100 N ILE B 77 SHEET 1 AA9 3 ILE B 167 CYS B 170 0 SHEET 2 AA9 3 VAL B 154 ALA B 158 -1 N LEU B 156 O ARG B 168 SHEET 3 AA9 3 LEU B 196 LYS B 200 -1 O LEU B 197 N LYS B 157 SHEET 1 AB1 8 LEU B 283 ASN B 289 0 SHEET 2 AB1 8 SER B 269 ALA B 277 -1 N GLU B 274 O GLU B 287 SHEET 3 AB1 8 LYS B 206 GLY B 214 -1 N GLY B 214 O SER B 269 SHEET 4 AB1 8 VAL B 220 ARG B 232 -1 O LEU B 223 N GLN B 211 SHEET 5 AB1 8 GLN B 235 ALA B 241 -1 O GLN B 235 N ARG B 232 SHEET 6 AB1 8 TYR B 332 ASN B 339 -1 O GLU B 335 N GLU B 239 SHEET 7 AB1 8 LEU B 384 ALA B 392 -1 O ILE B 385 N ILE B 338 SHEET 8 AB1 8 ILE B 365 HIS B 369 -1 N ARG B 366 O ILE B 389 SHEET 1 AB2 2 GLY B 352 THR B 353 0 SHEET 2 AB2 2 GLU B 376 ILE B 377 -1 O ILE B 377 N GLY B 352 SHEET 1 AB3 2 TYR B 357 TYR B 358 0 SHEET 2 AB3 2 GLU B 410 ILE B 411 -1 O GLU B 410 N TYR B 358 LINK OE2 GLU A 274 MG MG A 503 1555 1555 2.18 LINK OE2 GLU A 287 MG MG A 503 1555 1555 2.06 LINK O2B ADP A 501 MG MG A 503 1555 1555 1.80 LINK O1A ADP A 501 MG MG A 503 1555 1555 2.27 LINK MG MG A 503 O HOH A 617 1555 1555 1.93 LINK MG MG A 503 O HOH A 658 1555 1555 2.38 LINK OE1 GLU B 274 MG MG B 503 1555 1555 2.36 LINK OE2 GLU B 287 MG MG B 503 1555 1555 2.10 LINK O2B ADP B 502 MG MG B 503 1555 1555 2.04 LINK O2A ADP B 502 MG MG B 503 1555 1555 2.24 LINK MG MG B 503 O HOH B 640 1555 1555 2.21 LINK MG MG B 503 O HOH B 723 1555 1555 2.12 CISPEP 1 TYR A 152 PRO A 153 0 -1.02 CISPEP 2 ALA A 241 PRO A 242 0 -10.34 CISPEP 3 TYR B 152 PRO B 153 0 0.07 CISPEP 4 ALA B 241 PRO B 242 0 -10.81 CRYST1 72.282 86.878 86.105 90.00 113.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013835 0.000000 0.006058 0.00000 SCALE2 0.000000 0.011510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012678 0.00000