HEADER HYDROLASE/HYDROLASE INHIBITOR 07-OCT-20 7KCW TITLE CRYSTAL STRUCTURE OF S. AUREUS PENICILLIN-BINDING PROTEIN 4 (PBP4) TITLE 2 MUTANT (R200L) IN COMPLEX WITH NAFCILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN COL); SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: PBP4, SACOL0699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ACYL-ENZYME INTERMEDIATE, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.ALEXANDER,N.C.STRYNADKA REVDAT 4 18-OCT-23 7KCW 1 REMARK REVDAT 3 29-SEP-21 7KCW 1 JRNL REVDAT 2 18-AUG-21 7KCW 1 JRNL REVDAT 1 30-JUN-21 7KCW 0 JRNL AUTH N.SATISHKUMAR,J.A.N.ALEXANDER,R.POON,E.BUGGELN,M.A.ARGUDIN, JRNL AUTH 2 N.C.J.STRYNADKA,S.S.CHATTERJEE JRNL TITL PBP4-MEDIATED BETA-LACTAM RESISTANCE AMONG CLINICAL STRAINS JRNL TITL 2 OF STAPHYLOCOCCUS AUREUS. JRNL REF J.ANTIMICROB.CHEMOTHER. V. 76 2268 2021 JRNL REFN ESSN 1460-2091 JRNL PMID 34151961 JRNL DOI 10.1093/JAC/DKAB201 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV 3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9000 - 4.1700 1.00 3366 152 0.1557 0.1933 REMARK 3 2 4.1700 - 3.3100 1.00 3236 147 0.1484 0.1872 REMARK 3 3 3.3100 - 2.8900 1.00 3200 144 0.1754 0.1756 REMARK 3 4 2.8900 - 2.6300 1.00 3169 143 0.1753 0.2211 REMARK 3 5 2.6300 - 2.4400 1.00 3168 144 0.1699 0.2078 REMARK 3 6 2.4400 - 2.2900 1.00 3143 142 0.1867 0.2142 REMARK 3 7 2.2900 - 2.1800 1.00 3128 142 0.1896 0.2187 REMARK 3 8 2.1800 - 2.0800 1.00 3150 142 0.1907 0.2466 REMARK 3 9 2.0800 - 2.0000 1.00 3109 140 0.1841 0.2270 REMARK 3 10 2.0000 - 1.9400 1.00 3128 141 0.2088 0.2398 REMARK 3 11 1.9400 - 1.8700 0.99 3118 141 0.2477 0.3131 REMARK 3 12 1.8700 - 1.8200 0.99 3111 140 0.2343 0.2995 REMARK 3 13 1.8200 - 1.7700 0.98 3042 135 0.2416 0.2777 REMARK 3 14 1.7700 - 1.7300 0.97 2970 138 0.2749 0.3204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.181 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2926 REMARK 3 ANGLE : 1.323 3966 REMARK 3 CHIRALITY : 0.073 448 REMARK 3 PLANARITY : 0.011 504 REMARK 3 DIHEDRAL : 9.493 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2622 -9.7195 6.1015 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.2262 REMARK 3 T33: 0.4001 T12: -0.0074 REMARK 3 T13: 0.0006 T23: -0.1107 REMARK 3 L TENSOR REMARK 3 L11: 3.3406 L22: 1.3388 REMARK 3 L33: 0.8389 L12: -0.1452 REMARK 3 L13: -0.6263 L23: 0.3733 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: 0.0136 S13: -0.3873 REMARK 3 S21: -0.0670 S22: 0.0879 S23: -0.4692 REMARK 3 S31: -0.1100 S32: 0.1800 S33: -0.1398 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0315 -5.9930 10.9917 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.2246 REMARK 3 T33: 0.2615 T12: -0.0174 REMARK 3 T13: -0.0207 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.5570 L22: 7.5221 REMARK 3 L33: 7.3358 L12: 0.0203 REMARK 3 L13: 2.6063 L23: -3.5002 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: -0.1955 S13: -0.3677 REMARK 3 S21: 0.3014 S22: -0.1449 S23: 0.3005 REMARK 3 S31: 0.0538 S32: -0.3381 S33: 0.1484 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7949 16.1703 13.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.1787 REMARK 3 T33: 0.1138 T12: 0.0029 REMARK 3 T13: 0.0184 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.9758 L22: 4.7930 REMARK 3 L33: 1.8899 L12: 0.1837 REMARK 3 L13: 0.1784 L23: 2.2041 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0391 S13: 0.1027 REMARK 3 S21: -0.4647 S22: -0.0124 S23: -0.2107 REMARK 3 S31: -0.5258 S32: -0.0464 S33: -0.0087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5212 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6C39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000; 100 MM SODIUM ACETATE, REMARK 280 PH 5; AND 10 MM ZINC CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 TYR A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 75 O NFF A 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -133.66 52.47 REMARK 500 GLU A 114 -9.32 80.92 REMARK 500 ARG A 188 -124.10 51.10 REMARK 500 ALA A 230 59.97 -157.44 REMARK 500 LEU A 258 -61.65 -125.69 REMARK 500 ASN A 267 -142.28 52.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 815 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 362 NE2 REMARK 620 2 ASP A 364 OD1 126.7 REMARK 620 3 ASP A 364 OD2 137.8 59.1 REMARK 620 4 HOH A 727 O 89.3 141.0 106.2 REMARK 620 5 HOH A 745 O 93.8 91.2 128.4 69.5 REMARK 620 N 1 2 3 4 DBREF1 7KCW A 21 383 UNP A0A0H2WY27_STAAC DBREF2 7KCW A A0A0H2WY27 21 383 SEQADV 7KCW GLY A 17 UNP A0A0H2WY2 EXPRESSION TAG SEQADV 7KCW SER A 18 UNP A0A0H2WY2 EXPRESSION TAG SEQADV 7KCW HIS A 19 UNP A0A0H2WY2 EXPRESSION TAG SEQADV 7KCW MET A 20 UNP A0A0H2WY2 EXPRESSION TAG SEQADV 7KCW LEU A 200 UNP A0A0H2WY2 ARG 200 ENGINEERED MUTATION SEQRES 1 A 367 GLY SER HIS MET TYR ALA GLN ALA THR ASN SER ASP VAL SEQRES 2 A 367 THR PRO VAL GLN ALA ALA ASN GLN TYR GLY TYR ALA GLY SEQRES 3 A 367 LEU SER ALA ALA TYR GLU PRO THR SER ALA VAL ASN VAL SEQRES 4 A 367 SER GLN THR GLY GLN LEU LEU TYR GLN TYR ASN ILE ASP SEQRES 5 A 367 THR LYS TRP ASN PRO ALA SER MET THR LYS LEU MET THR SEQRES 6 A 367 MET TYR LEU THR LEU GLU ALA VAL ASN LYS GLY GLN LEU SEQRES 7 A 367 SER LEU ASP ASP THR VAL THR MET THR ASN LYS GLU TYR SEQRES 8 A 367 ILE MET SER THR LEU PRO GLU LEU SER ASN THR LYS LEU SEQRES 9 A 367 TYR PRO GLY GLN VAL TRP THR ILE ALA ASP LEU LEU GLN SEQRES 10 A 367 ILE THR VAL SER ASN SER SER ASN ALA ALA ALA LEU ILE SEQRES 11 A 367 LEU ALA LYS LYS VAL SER LYS ASN THR SER ASP PHE VAL SEQRES 12 A 367 ASP LEU MET ASN ASN LYS ALA LYS ALA ILE GLY MET LYS SEQRES 13 A 367 ASN THR HIS PHE VAL ASN PRO THR GLY ALA GLU ASN SER SEQRES 14 A 367 ARG LEU ARG THR PHE ALA PRO THR LYS TYR LYS ASP GLN SEQRES 15 A 367 GLU LEU THR VAL THR THR ALA ARG ASP TYR ALA ILE LEU SEQRES 16 A 367 ASP LEU HIS VAL ILE LYS GLU THR PRO LYS ILE LEU ASP SEQRES 17 A 367 PHE THR LYS GLN LEU ALA PRO THR THR HIS ALA VAL THR SEQRES 18 A 367 TYR TYR THR PHE ASN PHE SER LEU GLU GLY ALA LYS MET SEQRES 19 A 367 SER LEU PRO GLY THR ASP GLY LEU LYS THR GLY SER SER SEQRES 20 A 367 ASP THR ALA ASN TYR ASN HIS THR ILE THR THR LYS ARG SEQRES 21 A 367 GLY LYS PHE ARG ILE ASN GLN VAL ILE MET GLY ALA GLY SEQRES 22 A 367 ASP TYR LYS ASN LEU GLY GLY GLU LYS GLN ARG ASN MET SEQRES 23 A 367 MET GLY ASN ALA LEU MET GLU ARG SER PHE ASP GLN TYR SEQRES 24 A 367 LYS TYR VAL LYS ILE LEU SER LYS GLY GLU GLN ARG ILE SEQRES 25 A 367 ASN GLY LYS LYS TYR TYR VAL GLU ASN ASP LEU TYR ASP SEQRES 26 A 367 VAL LEU PRO SER ASP PHE SER LYS LYS ASP TYR LYS LEU SEQRES 27 A 367 VAL VAL GLU ASP GLY LYS VAL HIS ALA ASP TYR PRO ARG SEQRES 28 A 367 GLU PHE ILE ASN LYS ASP TYR GLY PRO PRO THR VAL GLU SEQRES 29 A 367 VAL HIS GLN HET NFF A 401 51 HET GOL A 402 14 HET GOL A 403 14 HET ZN A 404 1 HETNAM NFF (2R,4S)-2-[(1R)-1-{[(2-ETHOXYNAPHTHALEN-1-YL) HETNAM 2 NFF CARBONYL]AMINO}-2-OXOETHYL]-5,5-DIMETHYL-1,3- HETNAM 3 NFF THIAZOLIDINE-4-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN NFF NAFCILLIN, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NFF C21 H24 N2 O5 S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *315(H2 O) HELIX 1 AA1 THR A 30 TYR A 38 1 9 HELIX 2 AA2 PRO A 73 SER A 75 5 3 HELIX 3 AA3 MET A 76 LYS A 91 1 16 HELIX 4 AA4 THR A 103 THR A 111 1 9 HELIX 5 AA5 ILE A 128 ASN A 138 1 11 HELIX 6 AA6 SER A 140 SER A 152 1 13 HELIX 7 AA7 ASN A 154 GLY A 170 1 17 HELIX 8 AA8 GLU A 183 ALA A 191 5 9 HELIX 9 AA9 PRO A 192 LYS A 196 5 5 HELIX 10 AB1 THR A 204 THR A 219 1 16 HELIX 11 AB2 LYS A 221 LYS A 227 1 7 HELIX 12 AB3 GLY A 295 GLN A 314 1 20 HELIX 13 AB4 SER A 348 TYR A 352 5 5 SHEET 1 AA1 5 LEU A 61 TYR A 65 0 SHEET 2 AA1 5 SER A 51 SER A 56 -1 N ASN A 54 O LEU A 62 SHEET 3 AA1 5 PHE A 279 ALA A 288 -1 O ASN A 282 N VAL A 55 SHEET 4 AA1 5 ASN A 267 ARG A 276 -1 N ILE A 272 O GLN A 283 SHEET 5 AA1 5 THR A 255 SER A 263 -1 N GLY A 261 O ASN A 269 SHEET 1 AA2 2 THR A 99 THR A 101 0 SHEET 2 AA2 2 VAL A 125 THR A 127 -1 O TRP A 126 N VAL A 100 SHEET 1 AA3 2 THR A 232 THR A 233 0 SHEET 2 AA3 2 VAL A 236 THR A 237 -1 O VAL A 236 N THR A 233 SHEET 1 AA4 2 TYR A 315 LEU A 321 0 SHEET 2 AA4 2 LEU A 339 PRO A 344 -1 O LEU A 339 N LEU A 321 SHEET 1 AA5 5 GLY A 324 ILE A 328 0 SHEET 2 AA5 5 LYS A 331 VAL A 335 -1 O TYR A 333 N GLN A 326 SHEET 3 AA5 5 VAL A 379 HIS A 382 -1 O HIS A 382 N TYR A 334 SHEET 4 AA5 5 LYS A 360 ASP A 364 -1 N VAL A 361 O VAL A 379 SHEET 5 AA5 5 LYS A 353 GLU A 357 -1 N VAL A 355 O HIS A 362 LINK OG SER A 75 C NFF A 401 1555 1555 1.44 LINK NE2 HIS A 362 ZN ZN A 404 1555 1555 2.09 LINK OD1 ASP A 364 ZN ZN A 404 1555 1555 2.22 LINK OD2 ASP A 364 ZN ZN A 404 1555 1555 2.19 LINK ZN ZN A 404 O HOH A 727 1555 1555 2.47 LINK ZN ZN A 404 O HOH A 745 1555 1555 2.43 CISPEP 1 GLY A 257 LEU A 258 0 -1.84 CRYST1 50.150 82.870 104.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019940 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009557 0.00000