HEADER TRANSFERASE/ANTIBIOTIC 12-OCT-20 7KES TITLE CRYSTAL STRUCTURE OF META-AAC0038, AN ENVIRONMENTAL AMINOGLYCOSIDE TITLE 2 RESISTANCE ENZYME, MUTANT H168A IN COMPLEX WITH APRAMYCIN AND COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE N(3)-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: -MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS ANTIBIOTIC_NAT FAMILY, ACETYLTRANSFERASE, AMINOGLYCOSIDE, ANTIBIOTIC KEYWDS 2 RESISTANCE, METAGENOME, SOIL, CSGID, TRANSFERASE, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, NATIONAL INSTITUTE OF KEYWDS 4 ALLERGY AND INFECTIOUS DISEASES, NIAID, TRANSFERASE-ANTIBIOTIC KEYWDS 5 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,K.MICHALSKA,Z.XU,V.YIM,A.SAVCHENKO, AUTHOR 2 A.JOACHIMIAK,K.J.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 18-OCT-23 7KES 1 REMARK REVDAT 2 06-APR-22 7KES 1 JRNL REVDAT 1 21-OCT-20 7KES 0 JRNL AUTH P.J.STOGIOS,E.BORDELEAU,Z.XU,T.SKARINA,E.EVDOKIMOVA,S.CHOU, JRNL AUTH 2 L.DIORIO-TOTH,A.W.D'SOUZA,S.PATEL,G.DANTAS,G.D.WRIGHT, JRNL AUTH 3 A.SAVCHENKO JRNL TITL STRUCTURAL AND MOLECULAR RATIONALE FOR THE DIVERSIFICATION JRNL TITL 2 OF RESISTANCE MEDIATED BY THE ANTIBIOTIC_NAT FAMILY. JRNL REF COMMUN BIOL V. 5 263 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35338238 JRNL DOI 10.1038/S42003-022-03219-W REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1900 - 5.5400 1.00 2823 148 0.1683 0.1916 REMARK 3 2 5.5400 - 4.4000 1.00 2742 142 0.1565 0.1872 REMARK 3 3 4.4000 - 3.8500 1.00 2733 141 0.1593 0.2061 REMARK 3 4 3.8500 - 3.5000 1.00 2704 140 0.1872 0.2307 REMARK 3 5 3.5000 - 3.2500 1.00 2678 141 0.2041 0.2393 REMARK 3 6 3.2500 - 3.0500 1.00 2666 145 0.2212 0.2849 REMARK 3 7 3.0500 - 2.9000 1.00 2693 144 0.2383 0.2920 REMARK 3 8 2.9000 - 2.7800 1.00 2687 143 0.2340 0.2457 REMARK 3 9 2.7800 - 2.6700 1.00 2682 144 0.2291 0.2597 REMARK 3 10 2.6700 - 2.5800 1.00 2675 138 0.2434 0.2943 REMARK 3 11 2.5800 - 2.5000 1.00 2681 144 0.2578 0.2972 REMARK 3 12 2.5000 - 2.4300 1.00 2641 139 0.2696 0.3040 REMARK 3 13 2.4300 - 2.3600 0.99 2628 137 0.2960 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.325 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4288 REMARK 3 ANGLE : 1.337 5846 REMARK 3 CHIRALITY : 0.068 652 REMARK 3 PLANARITY : 0.006 740 REMARK 3 DIHEDRAL : 19.720 1606 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5357 -53.8307 -1.8254 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.4668 REMARK 3 T33: 0.4291 T12: -0.1538 REMARK 3 T13: -0.0334 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.8832 L22: 4.6391 REMARK 3 L33: 7.2666 L12: -3.9272 REMARK 3 L13: -1.0571 L23: -0.7362 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.1956 S13: -0.0193 REMARK 3 S21: -0.0290 S22: -0.0791 S23: -0.1402 REMARK 3 S31: -0.3700 S32: 0.7479 S33: 0.0474 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1440 -52.9831 2.3876 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.3972 REMARK 3 T33: 0.4208 T12: -0.1454 REMARK 3 T13: 0.0226 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 9.0084 L22: 8.4073 REMARK 3 L33: 8.2164 L12: -0.0477 REMARK 3 L13: -4.8226 L23: 5.0900 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.4975 S13: 1.5353 REMARK 3 S21: 0.1246 S22: 0.0425 S23: -0.3318 REMARK 3 S31: -0.8009 S32: -0.6117 S33: -0.1546 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9477 -47.6691 -1.6256 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.9980 REMARK 3 T33: 0.6524 T12: 0.2070 REMARK 3 T13: 0.0214 T23: 0.1602 REMARK 3 L TENSOR REMARK 3 L11: 7.1503 L22: 4.9664 REMARK 3 L33: 3.0392 L12: -0.6972 REMARK 3 L13: 1.6194 L23: -3.2906 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.2971 S13: 0.3760 REMARK 3 S21: 0.3278 S22: 0.4166 S23: 0.9820 REMARK 3 S31: -0.9596 S32: -1.4454 S33: -0.2748 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1989 -51.6581 12.4035 REMARK 3 T TENSOR REMARK 3 T11: 0.3850 T22: 0.5602 REMARK 3 T33: 0.4450 T12: -0.0389 REMARK 3 T13: 0.0129 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 4.3469 L22: 1.2098 REMARK 3 L33: 3.5884 L12: 0.9493 REMARK 3 L13: 0.4759 L23: 0.5017 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: -0.5549 S13: 0.1801 REMARK 3 S21: 0.1910 S22: 0.0268 S23: 0.0689 REMARK 3 S31: -0.3787 S32: -0.2962 S33: -0.1000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1839 -45.3592 -18.2281 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.9927 REMARK 3 T33: 0.6776 T12: 0.0465 REMARK 3 T13: -0.0541 T23: 0.2875 REMARK 3 L TENSOR REMARK 3 L11: 6.8106 L22: 2.1791 REMARK 3 L33: 8.4223 L12: 3.0071 REMARK 3 L13: 2.4105 L23: 1.4205 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: 0.3693 S13: 0.3582 REMARK 3 S21: -0.1709 S22: 0.1350 S23: 0.5554 REMARK 3 S31: -0.5034 S32: -1.3731 S33: -0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1894 -53.3096 -20.1149 REMARK 3 T TENSOR REMARK 3 T11: 0.4257 T22: 0.5009 REMARK 3 T33: 0.3592 T12: -0.1502 REMARK 3 T13: 0.0077 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 4.6625 L22: 2.9432 REMARK 3 L33: 3.7282 L12: -2.3077 REMARK 3 L13: -1.6202 L23: -1.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.2653 S13: 0.2484 REMARK 3 S21: -0.0272 S22: 0.1290 S23: -0.2524 REMARK 3 S31: -0.1315 S32: -0.0904 S33: -0.1978 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4845 -53.6808 -29.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.5083 T22: 0.8680 REMARK 3 T33: 0.4771 T12: -0.2097 REMARK 3 T13: -0.0359 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.8311 L22: 1.9767 REMARK 3 L33: 2.7746 L12: -0.9398 REMARK 3 L13: -1.1944 L23: 0.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 1.1017 S13: 0.0395 REMARK 3 S21: -0.5040 S22: 0.1408 S23: 0.1543 REMARK 3 S31: -0.0343 S32: -0.6708 S33: -0.0567 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1861 -39.9022 -38.4287 REMARK 3 T TENSOR REMARK 3 T11: 0.8953 T22: 1.3429 REMARK 3 T33: 0.7414 T12: -0.0034 REMARK 3 T13: -0.1615 T23: 0.3681 REMARK 3 L TENSOR REMARK 3 L11: 2.6253 L22: 3.6596 REMARK 3 L33: 2.8037 L12: -1.5920 REMARK 3 L13: 0.0825 L23: -0.7505 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: 1.3419 S13: 0.7620 REMARK 3 S21: -0.8425 S22: 0.0487 S23: 0.2218 REMARK 3 S31: -0.3603 S32: -0.9767 S33: -0.1961 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5HT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 50MM ADA PH 7, 10 MM REMARK 280 APRAMYCIN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.54833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.09667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.09667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.54833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 ARG A 263 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 ARG B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 -148.68 58.63 REMARK 500 ASP B 64 -157.59 59.55 REMARK 500 ASP B 209 104.68 -56.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 459 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AM2 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AM2 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HT0 RELATED DB: PDB REMARK 900 RELATED ID: 6MMZ RELATED DB: PDB REMARK 900 RELATED ID: 6MN0 RELATED DB: PDB REMARK 900 RELATED ID: 6MN1 RELATED DB: PDB REMARK 900 RELATED ID: 6MN2 RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP95436 RELATED DB: TARGETTRACK DBREF1 7KES A 2 263 UNP A0A059X981_9BACT DBREF2 7KES A A0A059X981 2 263 DBREF1 7KES B 2 263 UNP A0A059X981_9BACT DBREF2 7KES B A0A059X981 2 263 SEQADV 7KES VAL A 1 UNP A0A059X98 EXPRESSION TAG SEQADV 7KES ALA A 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION SEQADV 7KES VAL B 1 UNP A0A059X98 EXPRESSION TAG SEQADV 7KES ALA B 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION SEQRES 1 A 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU SEQRES 2 A 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL SEQRES 3 A 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL SEQRES 4 A 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL SEQRES 5 A 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP SEQRES 6 A 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG SEQRES 7 A 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER SEQRES 8 A 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR SEQRES 9 A 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER SEQRES 10 A 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA SEQRES 11 A 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO SEQRES 12 A 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET SEQRES 13 A 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS SEQRES 14 A 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU SEQRES 15 A 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL SEQRES 16 A 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO SEQRES 17 A 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU SEQRES 18 A 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE SEQRES 19 A 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE SEQRES 20 A 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG SEQRES 21 A 263 THR ALA ARG SEQRES 1 B 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU SEQRES 2 B 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL SEQRES 3 B 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL SEQRES 4 B 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL SEQRES 5 B 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP SEQRES 6 B 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG SEQRES 7 B 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER SEQRES 8 B 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR SEQRES 9 B 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER SEQRES 10 B 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA SEQRES 11 B 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO SEQRES 12 B 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET SEQRES 13 B 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS SEQRES 14 B 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU SEQRES 15 B 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL SEQRES 16 B 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO SEQRES 17 B 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU SEQRES 18 B 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE SEQRES 19 B 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE SEQRES 20 B 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG SEQRES 21 B 263 THR ALA ARG HET GOL A 301 6 HET COA A 302 48 HET AM2 A 303 37 HET CL A 304 1 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET COA B 304 48 HET AM2 B 305 37 HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETNAM AM2 APRAMYCIN HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AM2 NEBRAMYCIN II; 4-O-(3ALPHA-AMINO-6ALPHA-((4-AMINO-4- HETSYN 2 AM2 DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY)-2,3,4,5ABETA,6,7,8, HETSYN 3 AM2 8AALPHA-OCTAHYDRO-8BETA-HYDROXY-7BETA-(METHYLAMINO) HETSYN 4 AM2 PYRANO(3,2-B)PYRAN-2ALPHA-YL)-2-DEOXY-D-STREPTAMINE FORMUL 3 GOL 4(C3 H8 O3) FORMUL 4 COA 2(C21 H36 N7 O16 P3 S) FORMUL 5 AM2 2(C21 H41 N5 O11) FORMUL 6 CL CL 1- FORMUL 12 HOH *167(H2 O) HELIX 1 AA1 THR A 7 GLY A 19 1 13 HELIX 2 AA2 ALA A 31 GLY A 36 1 6 HELIX 3 AA3 PRO A 42 GLY A 54 1 13 HELIX 4 AA4 GLU A 68 ASP A 73 1 6 HELIX 5 AA5 ASP A 74 ILE A 81 5 8 HELIX 6 AA6 ILE A 92 ASN A 95 5 4 HELIX 7 AA7 GLY A 96 THR A 104 1 9 HELIX 8 AA8 SER A 113 ALA A 116 5 4 HELIX 9 AA9 GLU A 124 ALA A 130 1 7 HELIX 10 AB1 SER A 142 ALA A 150 1 9 HELIX 11 AB2 PRO A 160 MET A 164 5 5 HELIX 12 AB3 THR A 165 ALA A 174 1 10 HELIX 13 AB4 ASP A 214 THR A 226 1 13 HELIX 14 AB5 ALA A 244 ALA A 262 1 19 HELIX 15 AB6 THR B 7 GLY B 19 1 13 HELIX 16 AB7 LEU B 32 VAL B 35 5 4 HELIX 17 AB8 PRO B 42 GLY B 54 1 13 HELIX 18 AB9 GLU B 68 ASP B 73 1 6 HELIX 19 AC1 ASP B 74 ILE B 81 5 8 HELIX 20 AC2 ILE B 92 ASN B 95 5 4 HELIX 21 AC3 GLY B 96 THR B 104 1 9 HELIX 22 AC4 SER B 113 ALA B 116 5 4 HELIX 23 AC5 GLU B 124 ALA B 130 1 7 HELIX 24 AC6 SER B 142 ALA B 150 1 9 HELIX 25 AC7 PRO B 160 MET B 164 5 5 HELIX 26 AC8 THR B 165 ALA B 174 1 10 HELIX 27 AC9 ASP B 214 THR B 226 1 13 HELIX 28 AD1 ALA B 244 ALA B 262 1 19 SHEET 1 AA1 7 LEU A 109 ARG A 110 0 SHEET 2 AA1 7 MET A 118 GLY A 122 -1 O ALA A 120 N LEU A 109 SHEET 3 AA1 7 THR A 58 TYR A 62 -1 N GLY A 61 O ALA A 119 SHEET 4 AA1 7 ALA A 25 ALA A 30 1 N VAL A 26 O THR A 58 SHEET 5 AA1 7 LYS A 153 LEU A 157 1 O LEU A 157 N HIS A 29 SHEET 6 AA1 7 ALA A 237 PRO A 243 -1 O VAL A 240 N MET A 156 SHEET 7 AA1 7 LYS A 230 ILE A 234 -1 N GLY A 232 O SER A 239 SHEET 1 AA2 2 ILE A 181 LEU A 189 0 SHEET 2 AA2 2 LYS A 194 PHE A 202 -1 O PHE A 199 N TYR A 184 SHEET 1 AA3 7 LEU B 109 ARG B 110 0 SHEET 2 AA3 7 MET B 118 GLY B 122 -1 O ALA B 120 N LEU B 109 SHEET 3 AA3 7 THR B 58 TYR B 62 -1 N GLY B 61 O ALA B 119 SHEET 4 AA3 7 ALA B 25 ALA B 30 1 N VAL B 26 O THR B 58 SHEET 5 AA3 7 LYS B 153 LEU B 157 1 O LEU B 157 N HIS B 29 SHEET 6 AA3 7 ALA B 237 PRO B 243 -1 O VAL B 242 N VAL B 154 SHEET 7 AA3 7 LYS B 230 ILE B 234 -1 N ILE B 234 O ALA B 237 SHEET 1 AA4 2 ILE B 181 VAL B 190 0 SHEET 2 AA4 2 GLU B 193 PHE B 202 -1 O GLU B 193 N VAL B 190 SITE 1 AC1 2 GLU A 124 TRP A 127 SITE 1 AC2 24 HIS A 29 ALA A 30 ALA A 31 LEU A 32 SITE 2 AC2 24 ARG A 33 PRO A 42 ASN A 95 GLY A 96 SITE 3 AC2 24 PHE A 97 THR A 163 THR A 165 AM2 A 303 SITE 4 AC2 24 HOH A 403 HOH A 425 HOH A 430 HOH A 434 SITE 5 AC2 24 HOH A 440 HOH A 441 HOH A 443 HOH A 453 SITE 6 AC2 24 HOH A 469 GLN B 66 ARG B 93 HOH B 420 SITE 1 AC3 8 TYR A 62 TYR A 138 ASP A 162 THR A 204 SITE 2 AC3 8 ASP A 213 COA A 302 CL A 304 HOH A 403 SITE 1 AC4 2 AM2 A 303 HOH A 431 SITE 1 AC5 2 GLU B 124 TRP B 127 SITE 1 AC6 2 ASP B 73 TRP B 198 SITE 1 AC7 1 TRP B 254 SITE 1 AC8 20 GLN A 66 ARG A 93 HIS B 29 ALA B 30 SITE 2 AC8 20 ALA B 31 LEU B 32 ARG B 33 TYR B 62 SITE 3 AC8 20 ASN B 95 GLY B 96 PHE B 97 PRO B 160 SITE 4 AC8 20 THR B 163 THR B 165 AM2 B 305 HOH B 401 SITE 5 AC8 20 HOH B 406 HOH B 415 HOH B 421 HOH B 423 SITE 1 AC9 5 TYR B 62 TYR B 138 ASP B 162 THR B 204 SITE 2 AC9 5 COA B 304 CRYST1 127.766 127.766 94.645 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007827 0.004519 0.000000 0.00000 SCALE2 0.000000 0.009038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010566 0.00000