HEADER HYDROLASE/HYDROLASE INHIBITOR 14-OCT-20 7KFP TITLE STRUCTURE OF HUMAN PARG COMPLEXED WITH PARG-119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.143; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETT2(DE3) KEYWDS HYDROLASE, HYDROLASE INHIBITOR COMPLEX, METHYL XANTHINE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BROSEY,S.BOMMAGANI,L.S.WARDEN,D.E.JONES,Z.AHMED,J.A.TAINER REVDAT 3 18-OCT-23 7KFP 1 REMARK REVDAT 2 16-JUN-21 7KFP 1 JRNL REVDAT 1 10-MAR-21 7KFP 0 JRNL AUTH C.A.BROSEY,J.H.HOUL,P.KATSONIS,L.P.F.BALAPITI-MODARAGE, JRNL AUTH 2 S.BOMMAGANI,A.ARVAI,D.MOIANI,A.BACOLLA,T.LINK,L.S.WARDEN, JRNL AUTH 3 O.LICHTARGE,D.E.JONES,Z.AHMED,J.A.TAINER JRNL TITL TARGETING SARS-COV-2 NSP3 MACRODOMAIN STRUCTURE WITH JRNL TITL 2 INSIGHTS FROM HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) JRNL TITL 3 STRUCTURES WITH INHIBITORS. JRNL REF PROG.BIOPHYS.MOL.BIOL. V. 163 171 2021 JRNL REFN ISSN 0079-6107 JRNL PMID 33636189 JRNL DOI 10.1016/J.PBIOMOLBIO.2021.02.002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5800 - 4.7800 1.00 2828 159 0.2073 0.2176 REMARK 3 2 4.7800 - 3.8000 1.00 2717 140 0.1587 0.1508 REMARK 3 3 3.8000 - 3.3200 1.00 2663 158 0.1611 0.1913 REMARK 3 4 3.3200 - 3.0200 1.00 2662 150 0.1800 0.1751 REMARK 3 5 3.0200 - 2.8000 1.00 2650 145 0.1792 0.2080 REMARK 3 6 2.8000 - 2.6300 1.00 2657 133 0.1655 0.2022 REMARK 3 7 2.6300 - 2.5000 1.00 2646 132 0.1661 0.2306 REMARK 3 8 2.5000 - 2.3900 1.00 2639 136 0.1580 0.2183 REMARK 3 9 2.3900 - 2.3000 1.00 2602 158 0.1574 0.1908 REMARK 3 10 2.3000 - 2.2200 1.00 2618 143 0.1532 0.2009 REMARK 3 11 2.2200 - 2.1500 1.00 2657 121 0.1637 0.1942 REMARK 3 12 2.1500 - 2.0900 1.00 2618 129 0.1702 0.1894 REMARK 3 13 2.0900 - 2.0400 1.00 2645 134 0.1716 0.1909 REMARK 3 14 2.0400 - 1.9900 1.00 2600 149 0.2037 0.2493 REMARK 3 15 1.9900 - 1.9400 1.00 2595 141 0.2145 0.2245 REMARK 3 16 1.9400 - 1.9000 1.00 2617 132 0.2377 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4714 -0.4764 -10.3864 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.2710 REMARK 3 T33: 0.3265 T12: 0.0012 REMARK 3 T13: -0.0331 T23: 0.0785 REMARK 3 L TENSOR REMARK 3 L11: 1.4854 L22: 1.2676 REMARK 3 L33: 0.4898 L12: 0.9530 REMARK 3 L13: 0.1775 L23: 0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: 0.2111 S13: 0.3074 REMARK 3 S21: -0.1213 S22: 0.1260 S23: 0.4342 REMARK 3 S31: -0.1320 S32: -0.0340 S33: -0.0169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 509 THROUGH 543 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5874 -26.2880 -18.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: 0.3022 REMARK 3 T33: 0.2959 T12: -0.0365 REMARK 3 T13: -0.0392 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 1.4835 L22: 2.9333 REMARK 3 L33: 2.0508 L12: 0.2984 REMARK 3 L13: 0.3203 L23: -1.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.3671 S13: -0.3314 REMARK 3 S21: -0.4823 S22: 0.2062 S23: 0.0012 REMARK 3 S31: 0.1676 S32: 0.0564 S33: -0.1187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 544 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0888 -20.3010 -5.9687 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.2193 REMARK 3 T33: 0.2219 T12: -0.0275 REMARK 3 T13: 0.0144 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.6655 L22: 1.9226 REMARK 3 L33: 1.4076 L12: -0.3502 REMARK 3 L13: 0.4096 L23: -0.5400 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: 0.0618 S13: -0.2204 REMARK 3 S21: -0.0594 S22: 0.0916 S23: -0.0311 REMARK 3 S31: 0.0226 S32: 0.0592 S33: -0.0354 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 689 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4579 5.8628 -8.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.2309 REMARK 3 T33: 0.2075 T12: -0.0067 REMARK 3 T13: 0.0030 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.8372 L22: 2.4507 REMARK 3 L33: 0.2853 L12: 1.2693 REMARK 3 L13: -0.1596 L23: 0.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.0909 S13: 0.1766 REMARK 3 S21: -0.0319 S22: 0.1182 S23: 0.0521 REMARK 3 S31: -0.1247 S32: -0.0005 S33: -0.0822 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 754 THROUGH 804 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7661 -4.7021 -4.6569 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: 0.2525 REMARK 3 T33: 0.2091 T12: -0.0233 REMARK 3 T13: 0.0032 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.3968 L22: 2.1032 REMARK 3 L33: 1.2167 L12: 0.4363 REMARK 3 L13: 0.1612 L23: -0.4496 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0135 S13: -0.0451 REMARK 3 S21: 0.0263 S22: 0.0475 S23: -0.0856 REMARK 3 S31: -0.2286 S32: 0.1242 S33: -0.0112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 805 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1004 3.7149 -8.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2760 REMARK 3 T33: 0.1801 T12: 0.0032 REMARK 3 T13: -0.0104 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.5429 L22: 1.9883 REMARK 3 L33: 0.3881 L12: 0.9704 REMARK 3 L13: -0.4163 L23: -0.6108 REMARK 3 S TENSOR REMARK 3 S11: -0.1995 S12: -0.0759 S13: -0.0405 REMARK 3 S21: -0.0368 S22: 0.0873 S23: 0.0094 REMARK 3 S31: 0.0085 S32: 0.0393 S33: 0.1173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 878 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4453 10.6775 -13.3417 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.2608 REMARK 3 T33: 0.2546 T12: -0.0391 REMARK 3 T13: -0.0105 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.8878 L22: 1.9427 REMARK 3 L33: 2.8718 L12: 0.3501 REMARK 3 L13: -1.3438 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.3254 S13: 0.2038 REMARK 3 S21: -0.2461 S22: 0.1280 S23: -0.0261 REMARK 3 S31: -0.0796 S32: -0.1586 S33: -0.1486 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 879 THROUGH 961 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4789 19.6888 -8.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.2151 REMARK 3 T33: 0.2662 T12: -0.0401 REMARK 3 T13: -0.0083 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.8337 L22: 2.6605 REMARK 3 L33: 2.0639 L12: 0.8751 REMARK 3 L13: -0.3274 L23: -0.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.1179 S13: 0.3155 REMARK 3 S21: -0.0587 S22: 0.0545 S23: -0.1673 REMARK 3 S31: -0.1149 S32: 0.2097 S33: -0.0278 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08665 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66890 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTP, PH 7.5, 0.2 M AMSO4, 18 REMARK 280 -23% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.26600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.21300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.21300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.26600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 ASP A 450 REMARK 465 CYS A 467 REMARK 465 GLY A 468 REMARK 465 ILE A 469 REMARK 465 PRO A 522 REMARK 465 VAL A 523 REMARK 465 GLU A 524 REMARK 465 ASP A 525 REMARK 465 GLU A 526 REMARK 465 ASN A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 ARG A 530 REMARK 465 THR A 531 REMARK 465 ALA A 532 REMARK 465 SER A 962 REMARK 465 CYS A 963 REMARK 465 ALA A 964 REMARK 465 GLU A 965 REMARK 465 THR A 966 REMARK 465 ALA A 967 REMARK 465 ASP A 968 REMARK 465 HIS A 969 REMARK 465 SER A 970 REMARK 465 GLY A 971 REMARK 465 GLN A 972 REMARK 465 ARG A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 ARG A 463 CG CD NE CZ NH1 NH2 REMARK 470 MET A 464 CG SD CE REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 473 CG CD1 CD2 REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 ASN A 508 CG OD1 ND2 REMARK 470 LYS A 509 CE NZ REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 LEU A 544 CG CD1 CD2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 SER A 565 OG REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 GLN A 587 CG CD OE1 NE2 REMARK 470 CME A 603 CZ OH REMARK 470 LYS A 648 CG CD CE NZ REMARK 470 MET A 649 CG SD CE REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 SER A 651 OG REMARK 470 GLU A 652 CG CD OE1 OE2 REMARK 470 ARG A 671 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 684 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 703 CG CD OE1 OE2 REMARK 470 ASP A 704 CG OD1 OD2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 GLU A 709 CG CD OE1 OE2 REMARK 470 ARG A 710 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 712 CG CD OE1 OE2 REMARK 470 GLU A 728 CG CD OE1 OE2 REMARK 470 GLU A 797 CG CD OE1 OE2 REMARK 470 ARG A 800 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 806 CG CD OE1 OE2 REMARK 470 GLU A 810 CG CD OE1 OE2 REMARK 470 ARG A 830 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 839 CG CD OE1 OE2 REMARK 470 SER A 859 OG REMARK 470 GLU A 860 CG CD OE1 OE2 REMARK 470 GLU A 906 CG CD OE1 OE2 REMARK 470 ARG A 909 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 920 CG CD OE1 OE2 REMARK 470 GLU A 938 CG CD OE1 OE2 REMARK 470 ARG A 941 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 942 CG OD1 ND2 REMARK 470 SER A 944 OG REMARK 470 THR A 945 OG1 CG2 REMARK 470 ASP A 949 CG OD1 OD2 REMARK 470 LYS A 951 CG CD CE NZ REMARK 470 GLU A 961 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 653 O HOH A 1101 2.12 REMARK 500 O HOH A 1216 O HOH A 1296 2.17 REMARK 500 O HOH A 1108 O HOH A 1328 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1263 O HOH A 1342 2554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 561 45.55 -140.03 REMARK 500 SER A 592 -56.76 -125.21 REMARK 500 CYS A 608 70.17 -105.24 REMARK 500 MET A 649 60.16 -102.60 REMARK 500 SER A 651 -64.13 -91.16 REMARK 500 THR A 716 -169.51 -102.53 REMARK 500 SER A 749 -112.34 -133.90 REMARK 500 LEU A 752 47.96 -155.17 REMARK 500 VAL A 753 -153.39 -110.99 REMARK 500 ALA A 796 -126.42 49.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 WD7 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KG3 RELATED DB: PDB REMARK 900 RELATED ID: 7KG1 RELATED DB: PDB REMARK 900 RELATED ID: 7KG8 RELATED DB: PDB REMARK 900 RELATED ID: 7KG0 RELATED DB: PDB REMARK 900 RELATED ID: 7KG7 RELATED DB: PDB REMARK 900 RELATED ID: 7KG6 RELATED DB: PDB DBREF 7KFP A 448 976 UNP Q86W56 PARG_HUMAN 448 976 SEQADV 7KFP GLY A 446 UNP Q86W56 EXPRESSION TAG SEQADV 7KFP SER A 447 UNP Q86W56 EXPRESSION TAG SEQADV 7KFP ALA A 616 UNP Q86W56 LYS 616 ENGINEERED MUTATION SEQADV 7KFP ALA A 617 UNP Q86W56 GLN 617 ENGINEERED MUTATION SEQADV 7KFP ALA A 618 UNP Q86W56 LYS 618 ENGINEERED MUTATION SEQADV 7KFP ALA A 688 UNP Q86W56 GLU 688 ENGINEERED MUTATION SEQADV 7KFP ALA A 689 UNP Q86W56 LYS 689 ENGINEERED MUTATION SEQADV 7KFP ALA A 690 UNP Q86W56 LYS 690 ENGINEERED MUTATION SEQRES 1 A 531 GLY SER SER PRO ASP LYS LYS TRP LEU GLY THR PRO ILE SEQRES 2 A 531 GLU GLU MET ARG ARG MET PRO ARG CYS GLY ILE ARG LEU SEQRES 3 A 531 PRO LEU LEU ARG PRO SER ALA ASN HIS THR VAL THR ILE SEQRES 4 A 531 ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS PRO SEQRES 5 A 531 PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS HIS SEQRES 6 A 531 VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO VAL SEQRES 7 A 531 GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG TRP SEQRES 8 A 531 GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR ARG SEQRES 9 A 531 PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN VAL SEQRES 10 A 531 ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU ILE ASP SEQRES 11 A 531 PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN HIS SEQRES 12 A 531 LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE ALA SEQRES 13 A 531 LEU CME LEU PRO ASN ILE CYS THR GLN PRO ILE PRO LEU SEQRES 14 A 531 LEU ALA ALA ALA MET ASN HIS SER ILE THR MET SER GLN SEQRES 15 A 531 GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE CYS SEQRES 16 A 531 THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU TYR SEQRES 17 A 531 SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE GLU SEQRES 18 A 531 GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR LEU SEQRES 19 A 531 PHE CYS TYR PHE ARG ARG VAL THR ALA ALA ALA PRO THR SEQRES 20 A 531 GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP PHE SEQRES 21 A 531 PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG LEU SEQRES 22 A 531 HIS VAL THR TYR GLU GLY THR ILE GLU GLU ASN GLY GLN SEQRES 23 A 531 GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL GLY SEQRES 24 A 531 GLY GLY VAL THR SER ALA GLY LEU VAL GLN GLU GLU ILE SEQRES 25 A 531 ARG PHE LEU ILE ASN PRO GLU LEU ILE ILE SER ARG LEU SEQRES 26 A 531 PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE ILE SEQRES 27 A 531 THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR ALA SEQRES 28 A 531 GLU THR TYR ARG TRP SER ARG SER HIS GLU ASP GLY SER SEQRES 29 A 531 GLU ARG ASP ASP TRP GLN ARG ARG CYS THR GLU ILE VAL SEQRES 30 A 531 ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP GLN SEQRES 31 A 531 PHE VAL PRO GLU LYS MET ARG ARG GLU LEU ASN LYS ALA SEQRES 32 A 531 TYR CYS GLY PHE LEU ARG PRO GLY VAL SER SER GLU ASN SEQRES 33 A 531 LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY ALA SEQRES 34 A 531 PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN ILE SEQRES 35 A 531 LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR PHE SEQRES 36 A 531 THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SER SEQRES 37 A 531 MET HIS ILE PHE LEU THR GLU ARG LYS LEU THR VAL GLY SEQRES 38 A 531 ASP VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU GLU SEQRES 39 A 531 CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS LEU SEQRES 40 A 531 TYR PRO PHE ILE TYR HIS ALA VAL GLU SER CYS ALA GLU SEQRES 41 A 531 THR ALA ASP HIS SER GLY GLN ARG THR GLY THR MODRES 7KFP CME A 603 CYS MODIFIED RESIDUE HET CME A 603 10 HET WD7 A1001 39 HET DMS A1002 10 HET GOL A1003 14 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM WD7 N-{[2-(1,3-DIMETHYL-2-OXO-6-SULFANYLIDENE-1,2,3,6- HETNAM 2 WD7 TETRAHYDRO-7H-PURIN-7-YL) HETNAM 3 WD7 ETHYL]CARBAMOYL}METHANESULFONAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 WD7 C11 H16 N6 O4 S2 FORMUL 3 DMS C2 H6 O S FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *254(H2 O) HELIX 1 AA1 PRO A 457 MET A 461 5 5 HELIX 2 AA2 ARG A 485 LEU A 489 5 5 HELIX 3 AA3 SER A 534 LEU A 544 1 11 HELIX 4 AA4 ARG A 549 TYR A 560 1 12 HELIX 5 AA5 ASN A 561 SER A 565 5 5 HELIX 6 AA6 PHE A 570 VAL A 580 1 11 HELIX 7 AA7 GLU A 582 SER A 592 1 11 HELIX 8 AA8 SER A 592 CME A 603 1 12 HELIX 9 AA9 CME A 603 CYS A 608 1 6 HELIX 10 AB1 GLN A 627 PHE A 639 1 13 HELIX 11 AB2 PHE A 661 GLU A 666 5 6 HELIX 12 AB3 SER A 670 ALA A 689 1 20 HELIX 13 AB4 GLU A 707 CYS A 711 5 5 HELIX 14 AB5 THR A 725 GLY A 730 1 6 HELIX 15 AB6 VAL A 753 ASN A 762 1 10 HELIX 16 AB7 PRO A 763 ILE A 766 5 4 HELIX 17 AB8 ILE A 767 THR A 772 1 6 HELIX 18 AB9 TYR A 795 TYR A 799 5 5 HELIX 19 AC1 ARG A 831 PHE A 836 5 6 HELIX 20 AC2 VAL A 837 LEU A 853 1 17 HELIX 21 AC3 SER A 858 LEU A 862 5 5 HELIX 22 AC4 CYS A 872 GLY A 876 5 5 HELIX 23 AC5 ASP A 878 ALA A 893 1 16 HELIX 24 AC6 ASP A 904 ARG A 921 1 18 HELIX 25 AC7 THR A 924 CYS A 940 1 17 HELIX 26 AC8 LYS A 951 GLU A 961 1 11 SHEET 1 AA110 TRP A 453 GLY A 455 0 SHEET 2 AA110 LEU A 718 THR A 721 -1 O VAL A 720 N LEU A 454 SHEET 3 AA110 VAL A 897 PHE A 900 1 O TYR A 899 N HIS A 719 SHEET 4 AA110 VAL A 865 GLY A 868 1 N VAL A 865 O VAL A 898 SHEET 5 AA110 LEU A 734 ALA A 739 1 N LEU A 734 O ALA A 866 SHEET 6 AA110 GLU A 820 ASP A 825 1 O GLU A 820 N GLN A 735 SHEET 7 AA110 GLU A 779 THR A 784 -1 N ILE A 783 O ILE A 821 SHEET 8 AA110 LEU A 694 SER A 701 -1 N THR A 698 O ILE A 782 SHEET 9 AA110 HIS A 621 SER A 626 -1 N MET A 625 O VAL A 695 SHEET 10 AA110 HIS A 480 VAL A 482 1 N THR A 481 O THR A 624 SHEET 1 AA2 2 SER A 790 THR A 793 0 SHEET 2 AA2 2 ARG A 800 SER A 804 -1 O SER A 802 N GLU A 791 LINK C LEU A 602 N CME A 603 1555 1555 1.33 LINK C CME A 603 N LEU A 604 1555 1555 1.33 CISPEP 1 MET A 464 PRO A 465 0 3.45 CISPEP 2 PHE A 498 PRO A 499 0 0.60 CRYST1 66.532 88.660 94.426 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010590 0.00000