HEADER HYDROLASE/HYDROLASE INHIBITOR 15-OCT-20 7KG1 TITLE STRUCTURE OF HUMAN PARG COMPLEXED WITH PARG-002 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.143; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS HYDROLASE, HYDROLASE INHIBITOR COMPLEX, METHYL XANTHINE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BROSEY,L.P.F.BALAPITI-MODARAGE,L.S.WARDEN,D.E.JONES,Z.AHMED, AUTHOR 2 J.A.TAINER REVDAT 3 18-OCT-23 7KG1 1 REMARK REVDAT 2 16-JUN-21 7KG1 1 JRNL REVDAT 1 10-MAR-21 7KG1 0 JRNL AUTH C.A.BROSEY,J.H.HOUL,P.KATSONIS,L.P.F.BALAPITI-MODARAGE, JRNL AUTH 2 S.BOMMAGANI,A.ARVAI,D.MOIANI,A.BACOLLA,T.LINK,L.S.WARDEN, JRNL AUTH 3 O.LICHTARGE,D.E.JONES,Z.AHMED,J.A.TAINER JRNL TITL TARGETING SARS-COV-2 NSP3 MACRODOMAIN STRUCTURE WITH JRNL TITL 2 INSIGHTS FROM HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) JRNL TITL 3 STRUCTURES WITH INHIBITORS. JRNL REF PROG.BIOPHYS.MOL.BIOL. V. 163 171 2021 JRNL REFN ISSN 0079-6107 JRNL PMID 33636189 JRNL DOI 10.1016/J.PBIOMOLBIO.2021.02.002 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6600 - 4.7600 1.00 2907 153 0.2089 0.2134 REMARK 3 2 4.7600 - 3.7800 1.00 2798 137 0.1543 0.1658 REMARK 3 3 3.7800 - 3.3000 1.00 2732 168 0.1648 0.1773 REMARK 3 4 3.3000 - 3.0000 1.00 2740 143 0.1743 0.2330 REMARK 3 5 3.0000 - 2.7800 1.00 2713 146 0.1728 0.1778 REMARK 3 6 2.7800 - 2.6200 1.00 2668 179 0.1639 0.2013 REMARK 3 7 2.6200 - 2.4900 1.00 2721 138 0.1655 0.2027 REMARK 3 8 2.4900 - 2.3800 1.00 2720 127 0.1607 0.1939 REMARK 3 9 2.3800 - 2.2900 1.00 2683 146 0.1609 0.2081 REMARK 3 10 2.2900 - 2.2100 1.00 2706 130 0.1509 0.1681 REMARK 3 11 2.2100 - 2.1400 0.99 2670 145 0.1554 0.1741 REMARK 3 12 2.1400 - 2.0800 1.00 2712 127 0.1501 0.1600 REMARK 3 13 2.0800 - 2.0200 1.00 2668 142 0.1599 0.1825 REMARK 3 14 2.0200 - 1.9700 1.00 2697 133 0.1592 0.2128 REMARK 3 15 1.9700 - 1.9300 1.00 2717 129 0.1685 0.2087 REMARK 3 16 1.9300 - 1.8900 1.00 2680 133 0.1727 0.2131 REMARK 3 17 1.8900 - 1.8500 1.00 2644 140 0.1813 0.2320 REMARK 3 18 1.8500 - 1.8200 1.00 2692 139 0.1919 0.2385 REMARK 3 19 1.8200 - 1.7800 0.99 2654 144 0.2174 0.2499 REMARK 3 20 1.7800 - 1.7500 1.00 2675 140 0.2206 0.2670 REMARK 3 21 1.7500 - 1.7300 1.00 2669 161 0.2286 0.2559 REMARK 3 22 1.7300 - 1.7000 1.00 2672 121 0.2428 0.2583 REMARK 3 23 1.7000 - 1.6700 1.00 2662 150 0.2592 0.2892 REMARK 3 24 1.6700 - 1.6500 1.00 2668 136 0.2708 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.981 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4087 REMARK 3 ANGLE : 1.109 5566 REMARK 3 CHIRALITY : 0.072 612 REMARK 3 PLANARITY : 0.009 707 REMARK 3 DIHEDRAL : 14.294 1440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8561 12.6523 -4.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.2355 REMARK 3 T33: 0.4587 T12: 0.0178 REMARK 3 T13: -0.0303 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 3.4361 L22: 3.6939 REMARK 3 L33: 3.8884 L12: 3.1334 REMARK 3 L13: 2.3084 L23: 2.9789 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: -0.1444 S13: 0.5304 REMARK 3 S21: -0.1930 S22: -0.0546 S23: 0.6310 REMARK 3 S31: -0.2078 S32: -0.3748 S33: -0.0180 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 601 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2321 -23.2636 -7.6263 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.2196 REMARK 3 T33: 0.2825 T12: -0.0242 REMARK 3 T13: 0.0130 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.4850 L22: 1.3902 REMARK 3 L33: 0.7210 L12: -0.3308 REMARK 3 L13: 0.6344 L23: -0.5021 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.1577 S13: -0.4227 REMARK 3 S21: -0.1467 S22: 0.1361 S23: 0.1251 REMARK 3 S31: 0.0879 S32: 0.0439 S33: -0.1011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 602 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7725 -8.0068 -10.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.2616 REMARK 3 T33: 0.1827 T12: -0.0220 REMARK 3 T13: 0.0027 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.4408 L22: 2.0558 REMARK 3 L33: 0.1260 L12: 0.8629 REMARK 3 L13: -0.0317 L23: -0.0463 REMARK 3 S TENSOR REMARK 3 S11: -0.1051 S12: 0.2690 S13: -0.0234 REMARK 3 S21: -0.2580 S22: 0.1439 S23: 0.0088 REMARK 3 S31: -0.0470 S32: 0.0191 S33: -0.0445 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 726 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4324 -1.3458 -5.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.2207 REMARK 3 T33: 0.1778 T12: -0.0123 REMARK 3 T13: -0.0009 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.4541 L22: 2.5879 REMARK 3 L33: 0.4009 L12: 1.1565 REMARK 3 L13: -0.1011 L23: -0.4224 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.0644 S13: 0.0014 REMARK 3 S21: -0.0616 S22: 0.1000 S23: -0.0613 REMARK 3 S31: -0.0872 S32: 0.0397 S33: -0.0253 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 962 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3186 17.0493 -10.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2126 REMARK 3 T33: 0.2624 T12: -0.0244 REMARK 3 T13: -0.0020 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 3.4751 L22: 2.8963 REMARK 3 L33: 2.0832 L12: 1.4490 REMARK 3 L13: -0.7223 L23: -0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.2538 S13: 0.4122 REMARK 3 S21: -0.1605 S22: 0.1055 S23: -0.0689 REMARK 3 S31: -0.0799 S32: 0.0516 S33: -0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.05614 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTP, PH 7.5, 0.2 M AMSO4, 18 REMARK 280 -23% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.23150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.52450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.52450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.23150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 ASP A 450 REMARK 465 TYR A 521 REMARK 465 PRO A 522 REMARK 465 VAL A 523 REMARK 465 GLU A 524 REMARK 465 ASP A 525 REMARK 465 GLU A 526 REMARK 465 ASN A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 ARG A 530 REMARK 465 THR A 531 REMARK 465 CYS A 963 REMARK 465 ALA A 964 REMARK 465 GLU A 965 REMARK 465 THR A 966 REMARK 465 ALA A 967 REMARK 465 ASP A 968 REMARK 465 HIS A 969 REMARK 465 SER A 970 REMARK 465 GLY A 971 REMARK 465 GLN A 972 REMARK 465 ARG A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 469 CG1 CG2 CD1 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 473 CG CD1 CD2 REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 501 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 ASN A 508 CG OD1 ND2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 GLN A 518 CG CD OE1 NE2 REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 CME A 603 CZ OH REMARK 470 LYS A 648 CG CD CE NZ REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 SER A 651 OG REMARK 470 GLU A 652 CG CD OE1 OE2 REMARK 470 ARG A 671 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 684 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 703 CG CD OE1 OE2 REMARK 470 ASP A 704 CG OD1 OD2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 GLU A 709 CG CD OE1 OE2 REMARK 470 ARG A 710 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 712 CG CD OE1 OE2 REMARK 470 GLN A 731 CG CD OE1 NE2 REMARK 470 GLU A 797 CG CD OE1 OE2 REMARK 470 ARG A 800 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 830 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 839 CG CD OE1 OE2 REMARK 470 GLU A 860 CG CD OE1 OE2 REMARK 470 ARG A 909 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 922 CG CD CE NZ REMARK 470 ASN A 937 CG OD1 ND2 REMARK 470 GLU A 938 CG CD OE1 OE2 REMARK 470 ARG A 941 CG CD NE CZ NH1 NH2 REMARK 470 SER A 944 OG REMARK 470 ASP A 949 CG OD1 OD2 REMARK 470 LYS A 951 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 872 CB CYS A 872 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 561 42.64 -140.83 REMARK 500 SER A 592 -60.32 -126.10 REMARK 500 CYS A 608 73.55 -100.58 REMARK 500 ALA A 618 -2.84 80.99 REMARK 500 THR A 716 -169.01 -100.78 REMARK 500 SER A 749 -119.53 -134.02 REMARK 500 LEU A 752 47.39 -157.01 REMARK 500 VAL A 753 -154.10 -107.06 REMARK 500 TYR A 795 141.70 -170.42 REMARK 500 ALA A 796 -120.46 43.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1403 DISTANCE = 5.93 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KG3 RELATED DB: PDB REMARK 900 RELATED ID: 7KG8 RELATED DB: PDB REMARK 900 RELATED ID: 7KFP RELATED DB: PDB REMARK 900 RELATED ID: 7KG0 RELATED DB: PDB REMARK 900 RELATED ID: 7KG7 RELATED DB: PDB REMARK 900 RELATED ID: 7KG6 RELATED DB: PDB DBREF 7KG1 A 448 976 UNP Q86W56 PARG_HUMAN 448 976 SEQADV 7KG1 GLY A 446 UNP Q86W56 EXPRESSION TAG SEQADV 7KG1 SER A 447 UNP Q86W56 EXPRESSION TAG SEQADV 7KG1 ALA A 616 UNP Q86W56 LYS 616 ENGINEERED MUTATION SEQADV 7KG1 ALA A 617 UNP Q86W56 GLN 617 ENGINEERED MUTATION SEQADV 7KG1 ALA A 618 UNP Q86W56 LYS 618 ENGINEERED MUTATION SEQADV 7KG1 ALA A 688 UNP Q86W56 GLU 688 ENGINEERED MUTATION SEQADV 7KG1 ALA A 689 UNP Q86W56 LYS 689 ENGINEERED MUTATION SEQADV 7KG1 ALA A 690 UNP Q86W56 LYS 690 ENGINEERED MUTATION SEQRES 1 A 531 GLY SER SER PRO ASP LYS LYS TRP LEU GLY THR PRO ILE SEQRES 2 A 531 GLU GLU MET ARG ARG MET PRO ARG CYS GLY ILE ARG LEU SEQRES 3 A 531 PRO LEU LEU ARG PRO SER ALA ASN HIS THR VAL THR ILE SEQRES 4 A 531 ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS PRO SEQRES 5 A 531 PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS HIS SEQRES 6 A 531 VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO VAL SEQRES 7 A 531 GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG TRP SEQRES 8 A 531 GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR ARG SEQRES 9 A 531 PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN VAL SEQRES 10 A 531 ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU ILE ASP SEQRES 11 A 531 PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN HIS SEQRES 12 A 531 LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE ALA SEQRES 13 A 531 LEU CME LEU PRO ASN ILE CYS THR GLN PRO ILE PRO LEU SEQRES 14 A 531 LEU ALA ALA ALA MET ASN HIS SER ILE THR MET SER GLN SEQRES 15 A 531 GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE CYS SEQRES 16 A 531 THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU TYR SEQRES 17 A 531 SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE GLU SEQRES 18 A 531 GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR LEU SEQRES 19 A 531 PHE CYS TYR PHE ARG ARG VAL THR ALA ALA ALA PRO THR SEQRES 20 A 531 GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP PHE SEQRES 21 A 531 PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG LEU SEQRES 22 A 531 HIS VAL THR TYR GLU GLY THR ILE GLU GLU ASN GLY GLN SEQRES 23 A 531 GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL GLY SEQRES 24 A 531 GLY GLY VAL THR SER ALA GLY LEU VAL GLN GLU GLU ILE SEQRES 25 A 531 ARG PHE LEU ILE ASN PRO GLU LEU ILE ILE SER ARG LEU SEQRES 26 A 531 PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE ILE SEQRES 27 A 531 THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR ALA SEQRES 28 A 531 GLU THR TYR ARG TRP SER ARG SER HIS GLU ASP GLY SER SEQRES 29 A 531 GLU ARG ASP ASP TRP GLN ARG ARG CYS THR GLU ILE VAL SEQRES 30 A 531 ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP GLN SEQRES 31 A 531 PHE VAL PRO GLU LYS MET ARG ARG GLU LEU ASN LYS ALA SEQRES 32 A 531 TYR CYS GLY PHE LEU ARG PRO GLY VAL SER SER GLU ASN SEQRES 33 A 531 LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY ALA SEQRES 34 A 531 PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN ILE SEQRES 35 A 531 LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR PHE SEQRES 36 A 531 THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SER SEQRES 37 A 531 MET HIS ILE PHE LEU THR GLU ARG LYS LEU THR VAL GLY SEQRES 38 A 531 ASP VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU GLU SEQRES 39 A 531 CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS LEU SEQRES 40 A 531 TYR PRO PHE ILE TYR HIS ALA VAL GLU SER CYS ALA GLU SEQRES 41 A 531 THR ALA ASP HIS SER GLY GLN ARG THR GLY THR MODRES 7KG1 CME A 603 CYS MODIFIED RESIDUE HET CME A 603 10 HET DMS A1001 10 HET DMS A1002 10 HET DMS A1003 10 HET WDD A1004 42 HET DMS A1005 10 HET GOL A1006 14 HET GOL A1007 14 HET CAC A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HET SO4 A1012 5 HET SO4 A1013 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM WDD 1,3-DIMETHYL-8-{[2-(MORPHOLIN-4-YL)ETHYL]AMINO}-3,7- HETNAM 2 WDD DIHYDRO-1H-PURINE-2,6-DIONE HETNAM GOL GLYCEROL HETNAM CAC CACODYLATE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN CAC DIMETHYLARSINATE FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 DMS 4(C2 H6 O S) FORMUL 5 WDD C13 H20 N6 O3 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 CAC C2 H6 AS O2 1- FORMUL 10 SO4 5(O4 S 2-) FORMUL 15 HOH *303(H2 O) HELIX 1 AA1 PRO A 457 MET A 461 5 5 HELIX 2 AA2 ARG A 485 LEU A 489 5 5 HELIX 3 AA3 SER A 534 LEU A 544 1 11 HELIX 4 AA4 ARG A 549 TYR A 560 1 12 HELIX 5 AA5 ASN A 561 SER A 565 5 5 HELIX 6 AA6 PHE A 570 VAL A 580 1 11 HELIX 7 AA7 GLU A 582 SER A 592 1 11 HELIX 8 AA8 SER A 592 CME A 603 1 12 HELIX 9 AA9 CME A 603 CYS A 608 1 6 HELIX 10 AB1 GLN A 627 PHE A 639 1 13 HELIX 11 AB2 PHE A 661 GLU A 666 5 6 HELIX 12 AB3 SER A 670 ALA A 689 1 20 HELIX 13 AB4 GLU A 707 CYS A 711 5 5 HELIX 14 AB5 THR A 725 GLY A 730 1 6 HELIX 15 AB6 VAL A 753 ASN A 762 1 10 HELIX 16 AB7 PRO A 763 ILE A 766 5 4 HELIX 17 AB8 ILE A 767 THR A 772 1 6 HELIX 18 AB9 TYR A 795 TYR A 799 5 5 HELIX 19 AC1 ARG A 831 PHE A 836 5 6 HELIX 20 AC2 VAL A 837 LEU A 853 1 17 HELIX 21 AC3 SER A 858 LEU A 862 5 5 HELIX 22 AC4 ASP A 878 ALA A 893 1 16 HELIX 23 AC5 ASP A 904 ARG A 921 1 18 HELIX 24 AC6 THR A 924 CYS A 940 1 17 HELIX 25 AC7 LYS A 951 SER A 962 1 12 SHEET 1 AA110 TRP A 453 GLY A 455 0 SHEET 2 AA110 LEU A 718 THR A 721 -1 O VAL A 720 N LEU A 454 SHEET 3 AA110 VAL A 897 PHE A 900 1 O TYR A 899 N HIS A 719 SHEET 4 AA110 VAL A 865 GLY A 868 1 N VAL A 865 O VAL A 898 SHEET 5 AA110 LEU A 734 ALA A 739 1 N LEU A 734 O ALA A 866 SHEET 6 AA110 GLU A 820 ASP A 825 1 O VAL A 822 N ASP A 737 SHEET 7 AA110 GLU A 779 THR A 784 -1 N LEU A 781 O ALA A 823 SHEET 8 AA110 LEU A 694 SER A 701 -1 N THR A 698 O ILE A 782 SHEET 9 AA110 HIS A 621 SER A 626 -1 N ILE A 623 O PHE A 697 SHEET 10 AA110 HIS A 480 VAL A 482 1 N THR A 481 O THR A 624 SHEET 1 AA2 2 SER A 790 THR A 793 0 SHEET 2 AA2 2 ARG A 800 SER A 804 -1 O SER A 802 N GLU A 791 LINK C LEU A 602 N CME A 603 1555 1555 1.34 LINK C CME A 603 N LEU A 604 1555 1555 1.35 CISPEP 1 MET A 464 PRO A 465 0 4.49 CISPEP 2 PHE A 498 PRO A 499 0 4.76 CRYST1 66.463 88.964 95.049 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010521 0.00000