HEADER HYDROLASE/HYDROLASE INHIBITOR 16-OCT-20 7KG7 TITLE STRUCTURE OF HUMAN PARG COMPLEXED WITH PARG-292 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.143; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS HYDROLASE, HYDROLASE INHIBITOR COMPLEX, METHYL XANTHINE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BROSEY,L.P.F.BALAPITI-MODARAGE,L.S.WARDEN,D.E.JONES,Z.AHMED, AUTHOR 2 J.A.TAINER REVDAT 4 16-OCT-24 7KG7 1 REMARK REVDAT 3 18-OCT-23 7KG7 1 REMARK REVDAT 2 16-JUN-21 7KG7 1 JRNL REVDAT 1 10-MAR-21 7KG7 0 JRNL AUTH C.A.BROSEY,J.H.HOUL,P.KATSONIS,L.P.F.BALAPITI-MODARAGE, JRNL AUTH 2 S.BOMMAGANI,A.ARVAI,D.MOIANI,A.BACOLLA,T.LINK,L.S.WARDEN, JRNL AUTH 3 O.LICHTARGE,D.E.JONES,Z.AHMED,J.A.TAINER JRNL TITL TARGETING SARS-COV-2 NSP3 MACRODOMAIN STRUCTURE WITH JRNL TITL 2 INSIGHTS FROM HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) JRNL TITL 3 STRUCTURES WITH INHIBITORS. JRNL REF PROG.BIOPHYS.MOL.BIOL. V. 163 171 2021 JRNL REFN ISSN 0079-6107 JRNL PMID 33636189 JRNL DOI 10.1016/J.PBIOMOLBIO.2021.02.002 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.9000 - 4.7600 0.99 2892 153 0.2094 0.2071 REMARK 3 2 4.7600 - 3.7800 0.99 2767 171 0.1548 0.1486 REMARK 3 3 3.7800 - 3.3000 1.00 2749 155 0.1640 0.1952 REMARK 3 4 3.3000 - 3.0000 1.00 2719 162 0.1780 0.2000 REMARK 3 5 3.0000 - 2.7800 0.99 2732 109 0.1809 0.2174 REMARK 3 6 2.7800 - 2.6200 0.99 2752 107 0.1686 0.1981 REMARK 3 7 2.6200 - 2.4900 0.99 2718 123 0.1621 0.1796 REMARK 3 8 2.4900 - 2.3800 1.00 2725 112 0.1552 0.1901 REMARK 3 9 2.3800 - 2.2900 0.99 2691 141 0.1561 0.1969 REMARK 3 10 2.2900 - 2.2100 0.99 2687 133 0.1597 0.2031 REMARK 3 11 2.2100 - 2.1400 1.00 2709 127 0.1632 0.1795 REMARK 3 12 2.1400 - 2.0800 1.00 2709 137 0.1689 0.1890 REMARK 3 13 2.0800 - 2.0200 1.00 2661 143 0.1811 0.2338 REMARK 3 14 2.0200 - 1.9700 1.00 2672 149 0.1987 0.2505 REMARK 3 15 1.9700 - 1.9300 0.98 2655 126 0.2323 0.2388 REMARK 3 16 1.9300 - 1.8900 0.99 2691 132 0.2638 0.3035 REMARK 3 17 1.8900 - 1.8500 0.99 2651 136 0.3059 0.3559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4024 REMARK 3 ANGLE : 0.715 5480 REMARK 3 CHIRALITY : 0.046 605 REMARK 3 PLANARITY : 0.004 692 REMARK 3 DIHEDRAL : 13.549 1410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 754 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1422 1.6175 5.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.2602 REMARK 3 T33: 0.1790 T12: 0.0094 REMARK 3 T13: 0.0015 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.2115 L22: 2.4984 REMARK 3 L33: 0.4104 L12: -1.1264 REMARK 3 L13: 0.2572 L23: -0.4453 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: -0.0280 S13: 0.0041 REMARK 3 S21: 0.0499 S22: 0.0631 S23: -0.0562 REMARK 3 S31: 0.0864 S32: 0.0468 S33: -0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 962 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2194 -17.1467 9.9298 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.2129 REMARK 3 T33: 0.2496 T12: 0.0237 REMARK 3 T13: -0.0061 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.9631 L22: 2.8337 REMARK 3 L33: 1.9892 L12: -1.3504 REMARK 3 L13: 0.6053 L23: -0.5312 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: -0.1918 S13: -0.3811 REMARK 3 S21: 0.1362 S22: 0.1147 S23: -0.0864 REMARK 3 S31: 0.0960 S32: 0.0912 S33: -0.0575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0346 -6.7391 6.4845 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.2903 REMARK 3 T33: 0.4447 T12: -0.0262 REMARK 3 T13: 0.0083 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.8367 L22: 2.8066 REMARK 3 L33: 0.1614 L12: -2.1364 REMARK 3 L13: -0.0804 L23: 0.2957 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.1697 S13: -0.6646 REMARK 3 S21: 0.0804 S22: 0.0782 S23: 0.6997 REMARK 3 S31: 0.0891 S32: -0.0195 S33: -0.0298 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 494 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2088 20.8004 8.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2424 REMARK 3 T33: 0.2603 T12: 0.0281 REMARK 3 T13: -0.0071 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.0595 L22: 1.9577 REMARK 3 L33: 1.1382 L12: 0.1963 REMARK 3 L13: -0.3268 L23: -0.5550 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.1982 S13: 0.3375 REMARK 3 S21: 0.1838 S22: 0.1178 S23: 0.0263 REMARK 3 S31: -0.0605 S32: 0.0511 S33: -0.0390 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 689 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6123 -5.8730 8.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.2552 REMARK 3 T33: 0.2111 T12: 0.0036 REMARK 3 T13: -0.0114 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.0559 L22: 2.5412 REMARK 3 L33: 0.3242 L12: -1.3177 REMARK 3 L13: 0.1378 L23: 0.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.2258 S13: -0.1923 REMARK 3 S21: 0.1229 S22: 0.1201 S23: 0.0253 REMARK 3 S31: 0.0705 S32: -0.0102 S33: -0.0998 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 64.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.09191 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 1.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTP, PH 7.5, 0.2 M AMSO4, 18 REMARK 280 -23% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.30350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.39950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.51900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.39950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.51900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 ASP A 450 REMARK 465 VAL A 523 REMARK 465 GLU A 524 REMARK 465 ASP A 525 REMARK 465 GLU A 526 REMARK 465 ASN A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 ARG A 530 REMARK 465 THR A 531 REMARK 465 SER A 944 REMARK 465 THR A 945 REMARK 465 PRO A 946 REMARK 465 CYS A 963 REMARK 465 ALA A 964 REMARK 465 GLU A 965 REMARK 465 THR A 966 REMARK 465 ALA A 967 REMARK 465 ASP A 968 REMARK 465 HIS A 969 REMARK 465 SER A 970 REMARK 465 GLY A 971 REMARK 465 GLN A 972 REMARK 465 ARG A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 469 CG1 CG2 CD1 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 473 CG CD1 CD2 REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 501 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 503 CD CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 GLN A 518 CG CD OE1 NE2 REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 ASN A 545 CG OD1 ND2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 SER A 565 OG REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 GLU A 583 CD OE1 OE2 REMARK 470 GLN A 587 CG CD OE1 NE2 REMARK 470 CME A 603 CE CZ OH REMARK 470 LYS A 648 CG CD CE NZ REMARK 470 GLU A 652 CG CD OE1 OE2 REMARK 470 GLU A 703 CG CD OE1 OE2 REMARK 470 ASP A 704 CG OD1 OD2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 GLU A 709 CG CD OE1 OE2 REMARK 470 ARG A 710 NE CZ NH1 NH2 REMARK 470 GLU A 712 CG CD OE1 OE2 REMARK 470 GLU A 728 CG CD OE1 OE2 REMARK 470 GLN A 731 CG CD OE1 NE2 REMARK 470 ARG A 800 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 806 CG CD OE1 OE2 REMARK 470 GLU A 810 CG CD OE1 OE2 REMARK 470 ARG A 830 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 839 CG CD OE1 OE2 REMARK 470 ARG A 842 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 860 CG CD OE1 OE2 REMARK 470 GLU A 894 CG CD OE1 OE2 REMARK 470 GLU A 906 CG CD OE1 OE2 REMARK 470 LYS A 922 CG CD CE NZ REMARK 470 GLU A 938 CG CD OE1 OE2 REMARK 470 ARG A 941 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 942 CG OD1 ND2 REMARK 470 LYS A 951 CG CD CE NZ REMARK 470 SER A 962 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2345 O HOH A 2381 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 592 -59.48 -125.52 REMARK 500 CYS A 608 72.33 -102.26 REMARK 500 ALA A 618 -0.75 74.21 REMARK 500 MET A 649 52.48 -108.57 REMARK 500 THR A 716 -168.91 -102.28 REMARK 500 SER A 749 -115.40 -136.07 REMARK 500 LEU A 752 48.29 -156.97 REMARK 500 VAL A 753 -154.80 -112.28 REMARK 500 ALA A 796 -116.99 53.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2388 DISTANCE = 5.85 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KG3 RELATED DB: PDB REMARK 900 RELATED ID: 7KG1 RELATED DB: PDB REMARK 900 RELATED ID: 7KG8 RELATED DB: PDB REMARK 900 RELATED ID: 7KFP RELATED DB: PDB REMARK 900 RELATED ID: 7KG0 RELATED DB: PDB REMARK 900 RELATED ID: 7KG6 RELATED DB: PDB DBREF 7KG7 A 448 976 UNP Q86W56 PARG_HUMAN 448 976 SEQADV 7KG7 GLY A 446 UNP Q86W56 EXPRESSION TAG SEQADV 7KG7 SER A 447 UNP Q86W56 EXPRESSION TAG SEQADV 7KG7 ALA A 616 UNP Q86W56 LYS 616 ENGINEERED MUTATION SEQADV 7KG7 ALA A 617 UNP Q86W56 GLN 617 ENGINEERED MUTATION SEQADV 7KG7 ALA A 618 UNP Q86W56 LYS 618 ENGINEERED MUTATION SEQADV 7KG7 ALA A 688 UNP Q86W56 GLU 688 ENGINEERED MUTATION SEQADV 7KG7 ALA A 689 UNP Q86W56 LYS 689 ENGINEERED MUTATION SEQADV 7KG7 ALA A 690 UNP Q86W56 LYS 690 ENGINEERED MUTATION SEQRES 1 A 531 GLY SER SER PRO ASP LYS LYS TRP LEU GLY THR PRO ILE SEQRES 2 A 531 GLU GLU MET ARG ARG MET PRO ARG CYS GLY ILE ARG LEU SEQRES 3 A 531 PRO LEU LEU ARG PRO SER ALA ASN HIS THR VAL THR ILE SEQRES 4 A 531 ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS PRO SEQRES 5 A 531 PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS HIS SEQRES 6 A 531 VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO VAL SEQRES 7 A 531 GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG TRP SEQRES 8 A 531 GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR ARG SEQRES 9 A 531 PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN VAL SEQRES 10 A 531 ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU ILE ASP SEQRES 11 A 531 PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN HIS SEQRES 12 A 531 LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE ALA SEQRES 13 A 531 LEU CME LEU PRO ASN ILE CYS THR GLN PRO ILE PRO LEU SEQRES 14 A 531 LEU ALA ALA ALA MET ASN HIS SER ILE THR MET SER GLN SEQRES 15 A 531 GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE CYS SEQRES 16 A 531 THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU TYR SEQRES 17 A 531 SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE GLU SEQRES 18 A 531 GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR LEU SEQRES 19 A 531 PHE CYS TYR PHE ARG ARG VAL THR ALA ALA ALA PRO THR SEQRES 20 A 531 GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP PHE SEQRES 21 A 531 PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG LEU SEQRES 22 A 531 HIS VAL THR TYR GLU GLY THR ILE GLU GLU ASN GLY GLN SEQRES 23 A 531 GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL GLY SEQRES 24 A 531 GLY GLY VAL THR SER ALA GLY LEU VAL GLN GLU GLU ILE SEQRES 25 A 531 ARG PHE LEU ILE ASN PRO GLU LEU ILE ILE SER ARG LEU SEQRES 26 A 531 PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE ILE SEQRES 27 A 531 THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR ALA SEQRES 28 A 531 GLU THR TYR ARG TRP SER ARG SER HIS GLU ASP GLY SER SEQRES 29 A 531 GLU ARG ASP ASP TRP GLN ARG ARG CYS THR GLU ILE VAL SEQRES 30 A 531 ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP GLN SEQRES 31 A 531 PHE VAL PRO GLU LYS MET ARG ARG GLU LEU ASN LYS ALA SEQRES 32 A 531 TYR CYS GLY PHE LEU ARG PRO GLY VAL SER SER GLU ASN SEQRES 33 A 531 LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY ALA SEQRES 34 A 531 PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN ILE SEQRES 35 A 531 LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR PHE SEQRES 36 A 531 THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SER SEQRES 37 A 531 MET HIS ILE PHE LEU THR GLU ARG LYS LEU THR VAL GLY SEQRES 38 A 531 ASP VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU GLU SEQRES 39 A 531 CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS LEU SEQRES 40 A 531 TYR PRO PHE ILE TYR HIS ALA VAL GLU SER CYS ALA GLU SEQRES 41 A 531 THR ALA ASP HIS SER GLY GLN ARG THR GLY THR MODRES 7KG7 CME A 603 CYS MODIFIED RESIDUE HET CME A 603 7 HET WDJ A2001 43 HET DMS A2002 10 HET DMS A2003 10 HET DMS A2004 10 HET DMS A2005 10 HET SO4 A2006 5 HET SO4 A2007 5 HET SO4 A2008 5 HET SO4 A2009 5 HET SO4 A2010 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM WDJ 8-{[2-(1,1-DIOXO-1LAMBDA~6~,4-THIAZINAN-4-YL) HETNAM 2 WDJ ETHYL]SULFANYL}-1,3-DIMETHYL-3,7-DIHYDRO-1H-PURINE-2, HETNAM 3 WDJ 6-DIONE HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 WDJ C13 H19 N5 O4 S2 FORMUL 3 DMS 4(C2 H6 O S) FORMUL 7 SO4 5(O4 S 2-) FORMUL 12 HOH *288(H2 O) HELIX 1 AA1 PRO A 457 MET A 461 5 5 HELIX 2 AA2 ARG A 485 LEU A 489 5 5 HELIX 3 AA3 ARG A 535 LEU A 544 1 10 HELIX 4 AA4 ARG A 549 TYR A 560 1 12 HELIX 5 AA5 ASN A 561 SER A 565 5 5 HELIX 6 AA6 PHE A 570 VAL A 580 1 11 HELIX 7 AA7 GLU A 582 SER A 592 1 11 HELIX 8 AA8 SER A 592 CME A 603 1 12 HELIX 9 AA9 CME A 603 CYS A 608 1 6 HELIX 10 AB1 GLN A 627 PHE A 639 1 13 HELIX 11 AB2 PHE A 661 GLU A 666 5 6 HELIX 12 AB3 SER A 670 ALA A 689 1 20 HELIX 13 AB4 GLU A 707 CYS A 711 5 5 HELIX 14 AB5 THR A 725 GLY A 730 1 6 HELIX 15 AB6 VAL A 753 ASN A 762 1 10 HELIX 16 AB7 PRO A 763 ILE A 766 5 4 HELIX 17 AB8 ILE A 767 THR A 772 1 6 HELIX 18 AB9 TYR A 795 TYR A 799 5 5 HELIX 19 AC1 ARG A 831 PHE A 836 5 6 HELIX 20 AC2 VAL A 837 LEU A 853 1 17 HELIX 21 AC3 SER A 858 LEU A 862 5 5 HELIX 22 AC4 ASP A 878 ALA A 893 1 16 HELIX 23 AC5 ASP A 904 ARG A 921 1 18 HELIX 24 AC6 THR A 924 CYS A 940 1 17 HELIX 25 AC7 LYS A 951 SER A 962 1 12 SHEET 1 AA110 TRP A 453 GLY A 455 0 SHEET 2 AA110 LEU A 718 THR A 721 -1 O VAL A 720 N LEU A 454 SHEET 3 AA110 VAL A 897 PHE A 900 1 O TYR A 899 N HIS A 719 SHEET 4 AA110 VAL A 865 GLY A 868 1 N VAL A 865 O VAL A 898 SHEET 5 AA110 LEU A 734 ALA A 739 1 N LEU A 734 O ALA A 866 SHEET 6 AA110 GLU A 820 ASP A 825 1 O VAL A 822 N ASP A 737 SHEET 7 AA110 GLU A 779 THR A 784 -1 N ILE A 783 O ILE A 821 SHEET 8 AA110 LEU A 694 SER A 701 -1 N THR A 698 O ILE A 782 SHEET 9 AA110 HIS A 621 SER A 626 -1 N ILE A 623 O PHE A 697 SHEET 10 AA110 HIS A 480 VAL A 482 1 N THR A 481 O THR A 624 SHEET 1 AA2 2 LEU A 520 TYR A 521 0 SHEET 2 AA2 2 GLY A 533 SER A 534 -1 O GLY A 533 N TYR A 521 SHEET 1 AA3 2 SER A 790 THR A 793 0 SHEET 2 AA3 2 ARG A 800 SER A 804 -1 O SER A 802 N GLU A 791 LINK C LEU A 602 N CME A 603 1555 1555 1.33 LINK C CME A 603 N LEU A 604 1555 1555 1.33 CISPEP 1 MET A 464 PRO A 465 0 2.90 CISPEP 2 PHE A 498 PRO A 499 0 0.88 CRYST1 66.607 89.038 94.799 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010549 0.00000