HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-OCT-20 7KHJ TITLE CRYSTAL STRUCTURE OF KIT KINASE DOMAIN WITH A SMALL MOLECULE TITLE 2 INHIBITOR, PLX8512 IN THE DFG-IN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TYROSINE-PROTEIN KINASE, ATP-BINDING, KINASE-KINASE KEYWDS 2 INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG REVDAT 5 18-OCT-23 7KHJ 1 REMARK REVDAT 4 29-SEP-21 7KHJ 1 JRNL REVDAT 3 11-AUG-21 7KHJ 1 JRNL REVDAT 2 04-AUG-21 7KHJ 1 JRNL REVDAT 1 07-JUL-21 7KHJ 0 JRNL AUTH A.J.WAGNER,P.L.SEVERSON,A.F.SHIELDS,A.PATNAIK,R.CHUGH, JRNL AUTH 2 G.TINOCO,G.WU,M.NESPI,J.LIN,Y.ZHANG,T.EWING,G.HABETS, JRNL AUTH 3 E.A.BURTON,B.MATUSOW,J.TSAI,G.TSANG,R.SHELLOOE,H.CARIAS, JRNL AUTH 4 K.CHAN,H.REZAEI,L.SANFTNER,A.MARIMUTHU,W.SPEVAK,P.N.IBRAHIM, JRNL AUTH 5 K.INOKUCHI,O.ALCANTAR,G.MICHELSON,A.C.TSIATIS,C.ZHANG, JRNL AUTH 6 G.BOLLAG,J.C.TRENT,W.D.TAP JRNL TITL ASSOCIATION OF COMBINATION OF CONFORMATION-SPECIFIC KIT JRNL TITL 2 INHIBITORS WITH CLINICAL BENEFIT IN PATIENTS WITH REFRACTORY JRNL TITL 3 GASTROINTESTINAL STROMAL TUMORS: A PHASE 1B/2A NONRANDOMIZED JRNL TITL 4 CLINICAL TRIAL. JRNL REF JAMA ONCOL V. 7 1343 2021 JRNL REFN ESSN 2374-2445 JRNL PMID 34236401 JRNL DOI 10.1001/JAMAONCOL.2021.2086 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 18097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.1610 - 6.5811 0.96 1376 149 0.2201 0.2817 REMARK 3 2 6.5811 - 5.2246 0.98 1329 141 0.2515 0.2779 REMARK 3 3 5.2246 - 4.5645 0.99 1326 149 0.2293 0.2516 REMARK 3 4 4.5645 - 4.1473 0.99 1284 150 0.1993 0.2329 REMARK 3 5 4.1473 - 3.8501 0.99 1269 138 0.2382 0.3056 REMARK 3 6 3.8501 - 3.6231 0.98 1310 143 0.2445 0.2855 REMARK 3 7 3.6231 - 3.4417 0.98 1251 153 0.2451 0.3046 REMARK 3 8 3.4417 - 3.2919 0.97 1277 135 0.2633 0.3050 REMARK 3 9 3.2919 - 3.1652 0.96 1250 134 0.2991 0.3710 REMARK 3 10 3.1652 - 3.0559 0.96 1227 131 0.2993 0.3441 REMARK 3 11 3.0559 - 2.9604 0.90 1175 128 0.2874 0.3429 REMARK 3 12 2.9604 - 2.8758 0.89 1124 138 0.2999 0.3482 REMARK 3 13 2.8758 - 2.8001 0.85 1098 112 0.3239 0.3299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4497 REMARK 3 ANGLE : 1.308 6075 REMARK 3 CHIRALITY : 0.063 664 REMARK 3 PLANARITY : 0.008 762 REMARK 3 DIHEDRAL : 18.873 2674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 571 THROUGH 596 OR REMARK 3 RESID 601 THROUGH 682 OR RESID 765 REMARK 3 THROUGH 801 OR RESID 805 THROUGH 817 OR REMARK 3 RESID 821 THROUGH 888 OR RESID 893 REMARK 3 THROUGH 930)) REMARK 3 SELECTION : (CHAIN B AND (RESID 571 THROUGH 826 OR REMARK 3 RESID 829 THROUGH 930)) REMARK 3 ATOM PAIRS NUMBER : 2302 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 59.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1T45 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE-HCL, PH7.0, 1M SODIUM REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.87150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.45450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.45450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.87150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 542 REMARK 465 GLY A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 GLU A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 TRP A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 SER A 563 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 ALA A 599 REMARK 465 PHE A 600 REMARK 465 SER A 628 REMARK 465 ALA A 629 REMARK 465 HIS A 630 REMARK 465 SER A 749 REMARK 465 SER A 750 REMARK 465 ASP A 751 REMARK 465 THR A 752 REMARK 465 SER A 753 REMARK 465 PRO A 754 REMARK 465 ALA A 755 REMARK 465 SER A 756 REMARK 465 MET A 757 REMARK 465 GLU A 758 REMARK 465 ASP A 759 REMARK 465 ASP A 760 REMARK 465 GLU A 761 REMARK 465 GLY A 827 REMARK 465 ASN A 828 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 465 MET B 542 REMARK 465 GLY B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 HIS B 548 REMARK 465 HIS B 549 REMARK 465 MET B 550 REMARK 465 PRO B 551 REMARK 465 MET B 552 REMARK 465 TYR B 553 REMARK 465 GLU B 554 REMARK 465 VAL B 555 REMARK 465 GLN B 556 REMARK 465 TRP B 557 REMARK 465 LYS B 558 REMARK 465 VAL B 559 REMARK 465 VAL B 560 REMARK 465 GLU B 561 REMARK 465 GLU B 562 REMARK 465 SER B 563 REMARK 465 ASN B 564 REMARK 465 GLY B 565 REMARK 465 ASN B 566 REMARK 465 ASN B 567 REMARK 465 TYR B 568 REMARK 465 SER B 569 REMARK 465 TYR B 570 REMARK 465 ALA B 597 REMARK 465 GLY B 598 REMARK 465 ALA B 599 REMARK 465 PHE B 600 REMARK 465 SER B 628 REMARK 465 ALA B 629 REMARK 465 HIS B 630 REMARK 465 ARG B 741 REMARK 465 ARG B 742 REMARK 465 LYS B 743 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 SER B 746 REMARK 465 PHE B 747 REMARK 465 HIS B 748 REMARK 465 SER B 749 REMARK 465 SER B 750 REMARK 465 ASP B 751 REMARK 465 THR B 752 REMARK 465 SER B 753 REMARK 465 PRO B 754 REMARK 465 ALA B 755 REMARK 465 SER B 756 REMARK 465 MET B 757 REMARK 465 GLU B 758 REMARK 465 ASP B 759 REMARK 465 ASP B 760 REMARK 465 GLU B 761 REMARK 465 ASN B 762 REMARK 465 ALA B 763 REMARK 465 LEU B 764 REMARK 465 HIS B 802 REMARK 465 GLY B 803 REMARK 465 ARG B 804 REMARK 465 LYS B 818 REMARK 465 ASN B 819 REMARK 465 ASP B 820 REMARK 465 MET B 889 REMARK 465 SER B 890 REMARK 465 SER B 891 REMARK 465 PRO B 892 REMARK 465 SER B 931 REMARK 465 THR B 932 REMARK 465 ASN B 933 REMARK 465 HIS B 934 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 575 O HOH A 1101 2.00 REMARK 500 O PHE B 782 OG SER B 785 2.10 REMARK 500 NH1 ARG A 586 O PRO A 665 2.13 REMARK 500 OE1 GLN B 609 O HOH B 1101 2.13 REMARK 500 NE2 GLN B 609 O HOH B 1101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 646 ND2 ASN B 828 4555 1.67 REMARK 500 NZ LYS A 881 O HOH A 1101 3644 2.08 REMARK 500 OD1 ASN A 819 NH2 ARG A 830 3654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 887 CE1 PHE B 887 CZ 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 901 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 662 -141.97 -86.80 REMARK 500 ASP A 792 41.26 -154.55 REMARK 500 THR A 801 -168.34 -116.76 REMARK 500 ASP A 810 76.80 50.04 REMARK 500 ASP B 792 39.24 -156.39 REMARK 500 ASP B 810 78.54 50.96 REMARK 500 VAL B 875 98.97 -52.82 REMARK 500 HIS B 894 24.26 35.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WEG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WEG B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KHG RELATED DB: PDB DBREF 7KHJ A 542 934 PDB 7KHJ 7KHJ 542 934 DBREF 7KHJ B 542 934 PDB 7KHJ 7KHJ 542 934 SEQRES 1 A 335 MET GLY HIS HIS HIS HIS HIS HIS MET PRO MET TYR GLU SEQRES 2 A 335 VAL GLN TRP LYS VAL VAL GLU GLU SER ASN GLY ASN ASN SEQRES 3 A 335 TYR SER TYR ILE ASP PRO THR GLN LEU PRO TYR ASP HIS SEQRES 4 A 335 LYS TRP GLU PHE PRO ARG ASN ARG LEU SER PHE GLY LYS SEQRES 5 A 335 THR LEU GLY ALA GLY ALA PHE GLY LYS VAL VAL GLU ALA SEQRES 6 A 335 THR ALA GLN GLY LEU ILE LYS SER ASP ALA ALA MET THR SEQRES 7 A 335 VAL ALA VAL LYS MET LEU LYS PRO SER ALA HIS SER THR SEQRES 8 A 335 GLU ARG GLU ALA LEU MET SER GLU LEU LYS VAL LEU SER SEQRES 9 A 335 TYR LEU GLY ASN HIS GLU ASN ILE VAL ASN LEU LEU GLY SEQRES 10 A 335 ALA CYS THR HIS GLY GLY PRO THR LEU VAL ILE THR GLU SEQRES 11 A 335 TYR CYS CYS TYR GLY ASP LEU LEU ASN PHE LEU ARG ARG SEQRES 12 A 335 LYS ARG ASP SER PHE HIS SER SER ASP THR SER PRO ALA SEQRES 13 A 335 SER MET GLU ASP ASP GLU ASN ALA LEU ASP LEU GLU ASP SEQRES 14 A 335 LEU LEU SER PHE SER TYR GLN VAL ALA LYS GLY MET ALA SEQRES 15 A 335 PHE LEU ALA SER LYS ASN CYS ILE HIS ARG ASP LEU ALA SEQRES 16 A 335 ALA ARG ASN ILE LEU LEU THR HIS GLY ARG ILE THR LYS SEQRES 17 A 335 ILE CYS ASP PHE GLY LEU ALA ARG VAL ILE LYS ASN ASP SEQRES 18 A 335 SER ASN TYR VAL ASP LYS GLY ASN ALA ARG LEU PRO VAL SEQRES 19 A 335 LYS TRP MET ALA PRO GLU SER ILE PHE ASN SER VAL TYR SEQRES 20 A 335 THR PHE GLU SER ASP VAL TRP SER TYR GLY ILE PHE LEU SEQRES 21 A 335 TRP GLU LEU PHE SER LEU GLY SER SER PRO TYR PRO GLY SEQRES 22 A 335 MET PRO VAL ASP SER LYS PHE TYR LYS MET ILE LYS GLU SEQRES 23 A 335 GLY PHE ARG MET SER SER PRO GLU HIS ALA PRO ALA GLU SEQRES 24 A 335 MET TYR ASP ILE MET LYS THR CYS TRP ASP ALA ASP PRO SEQRES 25 A 335 ASP LYS ARG PRO THR PHE LYS GLN ILE VAL GLN ASP ILE SEQRES 26 A 335 GLU LYS GLN ILE SER GLU SER THR ASN HIS SEQRES 1 B 335 MET GLY HIS HIS HIS HIS HIS HIS MET PRO MET TYR GLU SEQRES 2 B 335 VAL GLN TRP LYS VAL VAL GLU GLU SER ASN GLY ASN ASN SEQRES 3 B 335 TYR SER TYR ILE ASP PRO THR GLN LEU PRO TYR ASP HIS SEQRES 4 B 335 LYS TRP GLU PHE PRO ARG ASN ARG LEU SER PHE GLY LYS SEQRES 5 B 335 THR LEU GLY ALA GLY ALA PHE GLY LYS VAL VAL GLU ALA SEQRES 6 B 335 THR ALA GLN GLY LEU ILE LYS SER ASP ALA ALA MET THR SEQRES 7 B 335 VAL ALA VAL LYS MET LEU LYS PRO SER ALA HIS SER THR SEQRES 8 B 335 GLU ARG GLU ALA LEU MET SER GLU LEU LYS VAL LEU SER SEQRES 9 B 335 TYR LEU GLY ASN HIS GLU ASN ILE VAL ASN LEU LEU GLY SEQRES 10 B 335 ALA CYS THR HIS GLY GLY PRO THR LEU VAL ILE THR GLU SEQRES 11 B 335 TYR CYS CYS TYR GLY ASP LEU LEU ASN PHE LEU ARG ARG SEQRES 12 B 335 LYS ARG ASP SER PHE HIS SER SER ASP THR SER PRO ALA SEQRES 13 B 335 SER MET GLU ASP ASP GLU ASN ALA LEU ASP LEU GLU ASP SEQRES 14 B 335 LEU LEU SER PHE SER TYR GLN VAL ALA LYS GLY MET ALA SEQRES 15 B 335 PHE LEU ALA SER LYS ASN CYS ILE HIS ARG ASP LEU ALA SEQRES 16 B 335 ALA ARG ASN ILE LEU LEU THR HIS GLY ARG ILE THR LYS SEQRES 17 B 335 ILE CYS ASP PHE GLY LEU ALA ARG VAL ILE LYS ASN ASP SEQRES 18 B 335 SER ASN TYR VAL ASP LYS GLY ASN ALA ARG LEU PRO VAL SEQRES 19 B 335 LYS TRP MET ALA PRO GLU SER ILE PHE ASN SER VAL TYR SEQRES 20 B 335 THR PHE GLU SER ASP VAL TRP SER TYR GLY ILE PHE LEU SEQRES 21 B 335 TRP GLU LEU PHE SER LEU GLY SER SER PRO TYR PRO GLY SEQRES 22 B 335 MET PRO VAL ASP SER LYS PHE TYR LYS MET ILE LYS GLU SEQRES 23 B 335 GLY PHE ARG MET SER SER PRO GLU HIS ALA PRO ALA GLU SEQRES 24 B 335 MET TYR ASP ILE MET LYS THR CYS TRP ASP ALA ASP PRO SEQRES 25 B 335 ASP LYS ARG PRO THR PHE LYS GLN ILE VAL GLN ASP ILE SEQRES 26 B 335 GLU LYS GLN ILE SER GLU SER THR ASN HIS HET WEG A1001 20 HET WEG B1001 20 HETNAM WEG 2-PHENYL-5-(1H-PYRAZOL-4-YL)-1H-PYRROLO[2,3-B]PYRIDINE FORMUL 3 WEG 2(C16 H12 N4) FORMUL 5 HOH *36(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 PRO A 585 ASN A 587 5 3 HELIX 3 AA3 THR A 632 GLY A 648 1 17 HELIX 4 AA4 ASP A 677 LYS A 685 1 9 HELIX 5 AA5 ASP A 765 LYS A 786 1 22 HELIX 6 AA6 ALA A 794 ARG A 796 5 3 HELIX 7 AA7 PRO A 832 MET A 836 5 5 HELIX 8 AA8 ALA A 837 SER A 844 1 8 HELIX 9 AA9 THR A 847 SER A 864 1 18 HELIX 10 AB1 ASP A 876 GLY A 886 1 11 HELIX 11 AB2 PRO A 896 TRP A 907 1 12 HELIX 12 AB3 ASP A 910 ARG A 914 5 5 HELIX 13 AB4 THR A 916 GLU A 930 1 15 HELIX 14 AB5 ASP B 572 LEU B 576 5 5 HELIX 15 AB6 PRO B 585 ASN B 587 5 3 HELIX 16 AB7 THR B 632 GLY B 648 1 17 HELIX 17 AB8 LEU B 678 LEU B 682 1 5 HELIX 18 AB9 LEU B 766 LYS B 786 1 21 HELIX 19 AC1 ALA B 794 ARG B 796 5 3 HELIX 20 AC2 PRO B 832 MET B 836 5 5 HELIX 21 AC3 ALA B 837 SER B 844 1 8 HELIX 22 AC4 THR B 847 SER B 864 1 18 HELIX 23 AC5 ASP B 876 GLY B 886 1 11 HELIX 24 AC6 PRO B 896 TRP B 907 1 12 HELIX 25 AC7 ASP B 910 ARG B 914 5 5 HELIX 26 AC8 THR B 916 GLU B 930 1 15 SHEET 1 AA1 5 LEU A 589 GLY A 596 0 SHEET 2 AA1 5 LYS A 602 GLN A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 MET A 624 -1 O VAL A 620 N ALA A 606 SHEET 4 AA1 5 LEU A 667 THR A 670 -1 O THR A 670 N ALA A 621 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 2 CYS A 788 ILE A 789 0 SHEET 2 AA2 2 ARG A 815 VAL A 816 -1 O ARG A 815 N ILE A 789 SHEET 1 AA3 2 ILE A 798 THR A 801 0 SHEET 2 AA3 2 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA4 2 TYR A 823 VAL A 824 0 SHEET 2 AA4 2 VAL A 845 TYR A 846 -1 O TYR A 846 N TYR A 823 SHEET 1 AA5 5 LEU B 589 GLY B 596 0 SHEET 2 AA5 5 LYS B 602 GLN B 609 -1 O GLU B 605 N GLY B 592 SHEET 3 AA5 5 ALA B 617 MET B 624 -1 O MET B 618 N ALA B 608 SHEET 4 AA5 5 LEU B 667 GLU B 671 -1 O THR B 670 N ALA B 621 SHEET 5 AA5 5 LEU B 656 CYS B 660 -1 N CYS B 660 O LEU B 667 SHEET 1 AA6 3 GLY B 676 ASP B 677 0 SHEET 2 AA6 3 ILE B 798 LEU B 800 -1 O LEU B 800 N GLY B 676 SHEET 3 AA6 3 LYS B 807 ILE B 808 -1 O LYS B 807 N LEU B 799 SHEET 1 AA7 2 CYS B 788 ILE B 789 0 SHEET 2 AA7 2 ARG B 815 VAL B 816 -1 O ARG B 815 N ILE B 789 SHEET 1 AA8 2 TYR B 823 VAL B 824 0 SHEET 2 AA8 2 VAL B 845 TYR B 846 -1 O TYR B 846 N TYR B 823 CISPEP 1 LYS B 626 PRO B 627 0 -6.42 SITE 1 AC1 10 ALA A 621 THR A 670 GLU A 671 TYR A 672 SITE 2 AC1 10 CYS A 673 CYS A 674 TYR A 675 GLY A 676 SITE 3 AC1 10 LEU A 799 ASP A 810 SITE 1 AC2 10 LEU B 595 THR B 670 TYR B 672 CYS B 673 SITE 2 AC2 10 CYS B 674 TYR B 675 GLY B 676 LEU B 799 SITE 3 AC2 10 CYS B 809 ASP B 810 CRYST1 57.743 61.739 206.909 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004833 0.00000