HEADER VIRAL PROTEIN 23-OCT-20 7KI5 TITLE CRYSTAL STRUCTURE OF P[6] ROTAVIRUS VP8* IN COMPLEX WITH LNT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10941; SOURCE 4 GENE: VP4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROTAVIRUS, HOST RECEPTOR INTERACTION, VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.XU,M.A.KENNEDY REVDAT 3 18-OCT-23 7KI5 1 REMARK REVDAT 2 22-SEP-21 7KI5 1 JRNL REVDAT 1 18-AUG-21 7KI5 0 JRNL AUTH S.XU,K.R.MCGINNIS,Y.LIU,P.HUANG,M.TAN,M.R.STUCKERT, JRNL AUTH 2 R.E.BURNSIDE,E.G.JACOB,S.NI,X.JIANG,M.A.KENNEDY JRNL TITL STRUCTURAL BASIS OF P[II] ROTAVIRUS EVOLUTION AND HOST JRNL TITL 2 RANGES UNDER SELECTION OF HISTO-BLOOD GROUP ANTIGENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34475219 JRNL DOI 10.1073/PNAS.2107963118 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 87918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4797 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 357 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 0.88000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5388 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4851 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7343 ; 1.233 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11197 ; 1.283 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 8.123 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;37.936 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 870 ;11.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6089 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1295 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7KI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 74.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE,0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6,2.0 REMARK 280 M AMMONIUM SULFATE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.67700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 160 REMARK 465 VAL B 1 REMARK 465 LEU B 160 REMARK 465 VAL C 1 REMARK 465 LEU C 2 REMARK 465 LEU C 160 REMARK 465 VAL D 1 REMARK 465 LEU D 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 NAG E 3 O5 GAL E 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 55 O2 BGC E 1 1554 1.49 REMARK 500 OE1 GLN C 55 C2 BGC E 1 1554 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -76.46 -101.36 REMARK 500 THR A 36 -57.97 -126.86 REMARK 500 THR B 24 -76.86 -99.09 REMARK 500 THR B 36 -58.69 -125.71 REMARK 500 PRO B 118 31.26 -99.01 REMARK 500 ASN B 129 55.95 -145.50 REMARK 500 ASP C 16 30.20 75.99 REMARK 500 THR C 24 -72.59 -95.84 REMARK 500 ASN C 25 21.16 -143.96 REMARK 500 THR C 36 -63.16 -123.07 REMARK 500 ASN C 129 59.36 -144.92 REMARK 500 ASP D 16 22.89 81.44 REMARK 500 THR D 24 -75.90 -98.61 REMARK 500 ASN D 25 16.48 -141.56 REMARK 500 THR D 36 -61.91 -123.24 REMARK 500 ASN D 129 53.69 -146.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 BGC E 1 REMARK 615 GAL E 2 REMARK 615 NAG E 3 REMARK 615 GAL E 4 DBREF 7KI5 A 1 160 UNP Q91E88 Q91E88_9REOV 53 212 DBREF 7KI5 B 1 160 UNP Q91E88 Q91E88_9REOV 53 212 DBREF 7KI5 C 1 160 UNP Q91E88 Q91E88_9REOV 53 212 DBREF 7KI5 D 1 160 UNP Q91E88 Q91E88_9REOV 53 212 SEQRES 1 A 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 A 160 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 A 160 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 A 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 A 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 A 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 A 160 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 A 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 A 160 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 A 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 A 160 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 A 160 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 A 160 ASN THR GLY LEU SEQRES 1 B 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 B 160 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 B 160 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 B 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 B 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 B 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 B 160 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 B 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 B 160 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 B 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 B 160 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 B 160 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 B 160 ASN THR GLY LEU SEQRES 1 C 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 C 160 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 C 160 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 C 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 C 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 C 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 C 160 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 C 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 C 160 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 C 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 C 160 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 C 160 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 C 160 ASN THR GLY LEU SEQRES 1 D 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 D 160 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 D 160 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 D 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 D 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 D 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 D 160 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 D 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 D 160 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 D 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 D 160 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 D 160 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 D 160 ASN THR GLY LEU HET BGC E 1 12 HET GAL E 2 11 HET NAG E 3 14 HET GAL E 4 11 HET PGE A 201 10 HET GOL C 201 6 HET GOL D 201 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 BGC C6 H12 O6 FORMUL 5 GAL 2(C6 H12 O6) FORMUL 5 NAG C8 H15 N O6 FORMUL 6 PGE C6 H14 O4 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *281(H2 O) HELIX 1 AA1 ASN A 129 VAL A 133 5 5 HELIX 2 AA2 GLN A 148 GLY A 159 1 12 HELIX 3 AA3 ASN B 129 VAL B 133 5 5 HELIX 4 AA4 GLN B 148 GLY B 159 1 12 HELIX 5 AA5 GLN C 148 GLY C 159 1 12 HELIX 6 AA6 ASN D 129 VAL D 133 5 5 HELIX 7 AA7 GLN D 148 GLY D 159 1 12 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA111 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA111 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA111 GLN A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N TRP A 74 O SER A 96 SHEET 8 AA111 TRP A 39 VAL A 45 -1 N ALA A 41 O MET A 79 SHEET 9 AA111 VAL A 28 THR A 33 -1 N VAL A 29 O LEU A 42 SHEET 10 AA111 GLU A 134 ILE A 137 -1 O VAL A 136 N GLU A 31 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA2 6 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA2 6 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA2 6 THR A 121 SER A 126 -1 O SER A 125 N VAL A 110 SHEET 1 AA3 2 VAL A 49 LEU A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O LYS A 63 N TYR A 56 SHEET 1 AA411 ASP B 3 TYR B 6 0 SHEET 2 AA411 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA411 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA411 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA411 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA411 GLN B 89 SER B 96 1 N THR B 93 O GLY B 115 SHEET 7 AA411 TRP B 74 ARG B 81 -1 N TRP B 74 O SER B 96 SHEET 8 AA411 TRP B 39 VAL B 45 -1 N ALA B 41 O MET B 79 SHEET 9 AA411 VAL B 28 THR B 33 -1 N GLY B 32 O VAL B 40 SHEET 10 AA411 GLU B 134 ILE B 137 -1 O VAL B 136 N GLU B 31 SHEET 11 AA411 THR B 9 PHE B 11 -1 N THR B 9 O ILE B 137 SHEET 1 AA5 6 ASP B 3 TYR B 6 0 SHEET 2 AA5 6 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA5 6 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA5 6 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA5 6 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA5 6 THR B 121 SER B 126 -1 O THR B 121 N HIS B 114 SHEET 1 AA6 2 VAL B 49 LEU B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O LYS B 63 N TYR B 56 SHEET 1 AA7 8 THR C 9 PHE C 11 0 SHEET 2 AA7 8 GLU C 134 ILE C 137 -1 O ILE C 137 N THR C 9 SHEET 3 AA7 8 VAL C 28 THR C 33 -1 N GLU C 31 O VAL C 136 SHEET 4 AA7 8 TRP C 39 VAL C 45 -1 O VAL C 40 N GLY C 32 SHEET 5 AA7 8 TRP C 74 ARG C 81 -1 O MET C 79 N ALA C 41 SHEET 6 AA7 8 GLN C 89 SER C 96 -1 O SER C 96 N TRP C 74 SHEET 7 AA7 8 SER C 109 GLU C 116 1 O GLY C 115 N THR C 95 SHEET 8 AA7 8 THR C 121 SER C 126 -1 O THR C 121 N HIS C 114 SHEET 1 AA810 THR C 9 PHE C 11 0 SHEET 2 AA810 GLU C 134 ILE C 137 -1 O ILE C 137 N THR C 9 SHEET 3 AA810 VAL C 28 THR C 33 -1 N GLU C 31 O VAL C 136 SHEET 4 AA810 TRP C 39 VAL C 45 -1 O VAL C 40 N GLY C 32 SHEET 5 AA810 TRP C 74 ARG C 81 -1 O MET C 79 N ALA C 41 SHEET 6 AA810 GLN C 89 SER C 96 -1 O SER C 96 N TRP C 74 SHEET 7 AA810 SER C 109 GLU C 116 1 O GLY C 115 N THR C 95 SHEET 8 AA810 ALA C 101 PHE C 106 -1 N MET C 104 O TRP C 111 SHEET 9 AA810 TYR C 17 ASN C 22 -1 N ILE C 19 O PHE C 103 SHEET 10 AA810 GLU C 140 PRO C 145 -1 O ILE C 144 N TRP C 18 SHEET 1 AA9 2 VAL C 49 LEU C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O LYS C 63 N TYR C 56 SHEET 1 AB111 ASP D 3 TYR D 6 0 SHEET 2 AB111 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB111 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB111 ALA D 101 PHE D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB111 SER D 109 GLU D 116 -1 O TRP D 111 N MET D 104 SHEET 6 AB111 GLN D 89 SER D 96 1 N THR D 93 O GLY D 115 SHEET 7 AB111 TRP D 74 ARG D 81 -1 N TRP D 74 O SER D 96 SHEET 8 AB111 TRP D 39 VAL D 45 -1 N VAL D 45 O LYS D 75 SHEET 9 AB111 VAL D 28 THR D 33 -1 N GLY D 32 O VAL D 40 SHEET 10 AB111 GLU D 134 ILE D 137 -1 O VAL D 136 N GLU D 31 SHEET 11 AB111 THR D 9 PHE D 11 -1 N THR D 9 O ILE D 137 SHEET 1 AB2 6 ASP D 3 TYR D 6 0 SHEET 2 AB2 6 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB2 6 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB2 6 ALA D 101 PHE D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB2 6 SER D 109 GLU D 116 -1 O TRP D 111 N MET D 104 SHEET 6 AB2 6 THR D 121 SER D 126 -1 O THR D 121 N HIS D 114 SHEET 1 AB3 2 VAL D 49 LEU D 58 0 SHEET 2 AB3 2 GLU D 61 ASN D 69 -1 O VAL D 67 N GLN D 52 LINK O4 BGC E 1 C1 GAL E 2 1555 1555 1.44 LINK O3 GAL E 2 C1 NAG E 3 1555 1555 1.40 LINK O3 NAG E 3 C1 GAL E 4 1555 1555 1.40 CISPEP 1 GLY A 4 PRO A 5 0 4.68 CISPEP 2 THR A 117 PRO A 118 0 1.29 CISPEP 3 GLY B 4 PRO B 5 0 -1.16 CISPEP 4 THR B 117 PRO B 118 0 6.10 CISPEP 5 GLY C 4 PRO C 5 0 2.30 CISPEP 6 THR C 117 PRO C 118 0 5.24 CISPEP 7 GLY D 4 PRO D 5 0 -2.69 CISPEP 8 THR D 117 PRO D 118 0 5.07 CRYST1 56.681 75.354 74.411 90.00 91.77 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017643 0.000000 0.000544 0.00000 SCALE2 0.000000 0.013271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013445 0.00000