HEADER REPLICATION/DNA 23-OCT-20 7KIJ TITLE MUSCOVY DUCK CIRCOVIRUS REP DOMAIN COMPLEXED WITH A SINGLE-STRANDED TITLE 2 DNA 10-MER COMPRISING THE CLEAVAGE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT HELICASE REP; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: REPP,REPLICATION-ASSOCIATED PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*AP*TP*TP*AP*TP*TP*AP*CP*C)-3'); COMPND 9 CHAIN: D, B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUSCOVY DUCK CIRCOVIRUS; SOURCE 3 ORGANISM_TAXID: 257468; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PTD68; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: MUSCOVY DUCK CIRCOVIRUS; SOURCE 10 ORGANISM_TAXID: 257468 KEYWDS HUH-TAG, HUH MOTIF, REP DOMAIN, VIRAL PROTEIN, SINGLE STRANDED DNA, KEYWDS 2 SSDNA, SSDNA BINDING, REPLICATION, DNA BINDING PROTEIN, REPLICATION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.J.TOMPKINS,W.R.GORDON,K.SHI REVDAT 2 18-OCT-23 7KIJ 1 REMARK REVDAT 1 17-NOV-21 7KIJ 0 JRNL AUTH K.TOMPKINS JRNL TITL MUSCOVY DUCK CIRCOVIRUS REP DOMAIN COMPLEXED WITH A JRNL TITL 2 SINGLE-STRANDED DNA 10-MER COMPRISING THE CLEAVAGE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.6500 - 4.3500 0.99 2979 156 0.1804 0.1971 REMARK 3 2 4.3400 - 3.4500 1.00 2799 158 0.1439 0.1561 REMARK 3 3 3.4500 - 3.0100 1.00 2786 146 0.1667 0.1951 REMARK 3 4 3.0100 - 2.7400 1.00 2765 153 0.1720 0.1854 REMARK 3 5 2.7400 - 2.5400 1.00 2747 142 0.1726 0.2044 REMARK 3 6 2.5400 - 2.3900 1.00 2735 126 0.1621 0.1941 REMARK 3 7 2.3900 - 2.2700 1.00 2741 132 0.1569 0.1840 REMARK 3 8 2.2700 - 2.1700 1.00 2741 124 0.1464 0.1885 REMARK 3 9 2.1700 - 2.0900 1.00 2701 147 0.1511 0.1851 REMARK 3 10 2.0900 - 2.0200 1.00 2712 126 0.1550 0.1903 REMARK 3 11 2.0200 - 1.9500 1.00 2704 147 0.1653 0.2276 REMARK 3 12 1.9500 - 1.9000 1.00 2713 117 0.1838 0.2158 REMARK 3 13 1.9000 - 1.8500 1.00 2682 153 0.2063 0.2253 REMARK 3 14 1.8500 - 1.8000 1.00 2701 133 0.2283 0.2433 REMARK 3 15 1.8000 - 1.7600 1.00 2691 145 0.2544 0.2695 REMARK 3 16 1.7600 - 1.7200 1.00 2649 155 0.2978 0.3105 REMARK 3 17 1.7200 - 1.6900 1.00 2677 141 0.3346 0.4022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 54.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.03628 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82530 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6WDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.8, 2.2M REMARK 280 AMMONIUM SULFATE, 20% GLYCEROL ADDED TO DROP, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.09800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.19600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.14700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.24500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.04900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.09800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 92.19600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.24500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.14700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.04900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 513 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 GLY C 5 REMARK 465 ASN C 6 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 ARG C 109 REMARK 465 SER C 110 REMARK 465 SER C 111 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 TYR A 7 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 GLY A 108 REMARK 465 ARG A 109 REMARK 465 SER A 110 REMARK 465 SER A 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT D 299 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT D 299 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT D 299 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 374 O HOH A 379 1.84 REMARK 500 O HOH A 354 O HOH A 386 1.85 REMARK 500 O HOH A 308 O HOH A 354 1.91 REMARK 500 O HOH A 363 O HOH A 380 1.92 REMARK 500 O HOH C 305 O HOH C 326 1.93 REMARK 500 O HOH C 355 O HOH C 371 1.94 REMARK 500 O HOH A 308 O HOH A 386 1.94 REMARK 500 O HOH A 360 O HOH A 375 1.97 REMARK 500 O HOH C 386 O HOH C 404 2.01 REMARK 500 O HOH C 383 O HOH C 405 2.07 REMARK 500 O HOH C 390 O HOH D 413 2.10 REMARK 500 O HOH C 361 O HOH C 384 2.10 REMARK 500 O HOH A 366 O HOH B 532 2.13 REMARK 500 O HOH A 373 O HOH A 378 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 64 CD - NE - CZ ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG C 64 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT D 302 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA D 306 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA B 306 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 45 37.13 -149.03 REMARK 500 ASN C 48 32.03 -98.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 GOL C 201 DBREF 7KIJ C 1 111 UNP D2JZX8 D2JZX8_9CIRC 1 111 DBREF 7KIJ D 299 308 PDB 7KIJ 7KIJ 299 308 DBREF 7KIJ A 1 111 UNP D2JZX8 D2JZX8_9CIRC 1 111 DBREF 7KIJ B 299 308 PDB 7KIJ 7KIJ 299 308 SEQADV 7KIJ PHE C 91 UNP D2JZX8 TYR 91 ENGINEERED MUTATION SEQADV 7KIJ PHE A 91 UNP D2JZX8 TYR 91 ENGINEERED MUTATION SEQRES 1 C 111 MET ALA LYS SER GLY ASN TYR SER TYR LYS ARG TRP VAL SEQRES 2 C 111 PHE THR ILE ASN ASN PRO THR PHE GLU ASP TYR VAL HIS SEQRES 3 C 111 VAL LEU GLU PHE CYS THR LEU ASP ASN CYS LYS PHE ALA SEQRES 4 C 111 ILE VAL GLY GLU GLU LYS GLY ALA ASN GLY THR PRO HIS SEQRES 5 C 111 LEU GLN GLY PHE LEU ASN LEU ARG SER ASN ALA ARG ALA SEQRES 6 C 111 ALA ALA LEU GLU GLU SER LEU GLY GLY ARG ALA TRP LEU SEQRES 7 C 111 SER ARG ALA ARG GLY SER ASP GLU ASP ASN GLU GLU PHE SEQRES 8 C 111 CYS ALA LYS GLU SER THR TYR LEU ARG VAL GLY GLU PRO SEQRES 9 C 111 VAL SER LYS GLY ARG SER SER SEQRES 1 D 10 DT DA DT DT DA DT DT DA DC DC SEQRES 1 A 111 MET ALA LYS SER GLY ASN TYR SER TYR LYS ARG TRP VAL SEQRES 2 A 111 PHE THR ILE ASN ASN PRO THR PHE GLU ASP TYR VAL HIS SEQRES 3 A 111 VAL LEU GLU PHE CYS THR LEU ASP ASN CYS LYS PHE ALA SEQRES 4 A 111 ILE VAL GLY GLU GLU LYS GLY ALA ASN GLY THR PRO HIS SEQRES 5 A 111 LEU GLN GLY PHE LEU ASN LEU ARG SER ASN ALA ARG ALA SEQRES 6 A 111 ALA ALA LEU GLU GLU SER LEU GLY GLY ARG ALA TRP LEU SEQRES 7 A 111 SER ARG ALA ARG GLY SER ASP GLU ASP ASN GLU GLU PHE SEQRES 8 A 111 CYS ALA LYS GLU SER THR TYR LEU ARG VAL GLY GLU PRO SEQRES 9 A 111 VAL SER LYS GLY ARG SER SER SEQRES 1 B 10 DT DA DT DT DA DT DT DA DC DC HET GOL C 201 14 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET SO4 A 201 5 HET MN B 401 1 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 MN MN 2+ FORMUL 11 HOH *281(H2 O) HELIX 1 AA1 THR C 20 CYS C 31 1 12 HELIX 2 AA2 ARG C 64 LEU C 72 1 9 HELIX 3 AA3 SER C 84 ALA C 93 1 10 HELIX 4 AA4 THR A 20 CYS A 31 1 12 HELIX 5 AA5 ARG A 64 LEU A 72 1 9 HELIX 6 AA6 SER A 84 ALA A 93 1 10 SHEET 1 AA1 5 TRP C 77 ARG C 80 0 SHEET 2 AA1 5 TYR C 9 ASN C 17 -1 N THR C 15 O TRP C 77 SHEET 3 AA1 5 HIS C 52 ALA C 63 -1 O LEU C 53 N ILE C 16 SHEET 4 AA1 5 CYS C 36 GLU C 44 -1 N GLY C 42 O GLN C 54 SHEET 5 AA1 5 THR C 97 GLY C 102 -1 O VAL C 101 N ALA C 39 SHEET 1 AA2 5 TRP A 77 ARG A 80 0 SHEET 2 AA2 5 TYR A 9 ASN A 17 -1 N THR A 15 O TRP A 77 SHEET 3 AA2 5 PRO A 51 ALA A 63 -1 O LEU A 53 N ILE A 16 SHEET 4 AA2 5 CYS A 36 LYS A 45 -1 N GLY A 42 O GLN A 54 SHEET 5 AA2 5 THR A 97 GLY A 102 -1 O VAL A 101 N ALA A 39 CRYST1 102.986 102.986 138.294 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009710 0.005606 0.000000 0.00000 SCALE2 0.000000 0.011212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007231 0.00000