HEADER TRANSFERASE 26-OCT-20 7KJC TITLE CRYSTAL STRUCTURE OF THE EPHA2 S901E MUTANT INTRACELLULAR KD-SAM TITLE 2 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPH RECEPTOR, KINASE, SAM, ALLOSTERY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.LECHTENBERG,E.B.PASQUALE REVDAT 3 18-OCT-23 7KJC 1 REMARK REVDAT 2 12-JAN-22 7KJC 1 JRNL REVDAT 1 03-FEB-21 7KJC 0 JRNL AUTH B.C.LECHTENBERG,M.P.GEHRING,T.P.LIGHT,C.R.HORNE, JRNL AUTH 2 M.W.MATSUMOTO,K.HRISTOVA,E.B.PASQUALE JRNL TITL REGULATION OF THE EPHA2 RECEPTOR INTRACELLULAR REGION BY JRNL TITL 2 PHOSPHOMIMETIC NEGATIVE CHARGES IN THE KINASE-SAM LINKER. JRNL REF NAT COMMUN V. 12 7047 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34857764 JRNL DOI 10.1038/S41467-021-27343-Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2500 - 5.5300 1.00 2805 150 0.1855 0.2148 REMARK 3 2 5.5300 - 4.4000 1.00 2715 171 0.1543 0.1683 REMARK 3 3 4.4000 - 3.8400 1.00 2725 128 0.1516 0.1717 REMARK 3 4 3.8400 - 3.4900 1.00 2680 150 0.1715 0.2082 REMARK 3 5 3.4900 - 3.2400 1.00 2687 155 0.1706 0.2287 REMARK 3 6 3.2400 - 3.0500 1.00 2673 150 0.1940 0.2347 REMARK 3 7 3.0500 - 2.9000 1.00 2688 134 0.2096 0.2576 REMARK 3 8 2.9000 - 2.7700 1.00 2657 156 0.2138 0.2590 REMARK 3 9 2.7700 - 2.6600 1.00 2669 152 0.2167 0.2760 REMARK 3 10 2.6600 - 2.5700 1.00 2701 136 0.2175 0.2676 REMARK 3 11 2.5700 - 2.4900 1.00 2663 128 0.2257 0.3007 REMARK 3 12 2.4900 - 2.4200 1.00 2670 160 0.2382 0.2775 REMARK 3 13 2.4200 - 2.3600 1.00 2672 120 0.2504 0.2777 REMARK 3 14 2.3600 - 2.3000 1.00 2672 136 0.2681 0.3548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6070 REMARK 3 ANGLE : 0.520 8211 REMARK 3 CHIRALITY : 0.042 896 REMARK 3 PLANARITY : 0.003 1029 REMARK 3 DIHEDRAL : 14.187 2317 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0915 20.1344 -25.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2030 REMARK 3 T33: 0.2399 T12: 0.0405 REMARK 3 T13: -0.0094 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.6464 L22: 1.1097 REMARK 3 L33: 1.8279 L12: 0.4411 REMARK 3 L13: -0.7242 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.0859 S12: 0.0673 S13: 0.0158 REMARK 3 S21: 0.0751 S22: -0.0251 S23: 0.0557 REMARK 3 S31: -0.0582 S32: -0.2051 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 753 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6065 17.1091 -31.8278 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.3074 REMARK 3 T33: 0.3285 T12: -0.0064 REMARK 3 T13: -0.0137 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.1111 L22: 1.6599 REMARK 3 L33: 2.0744 L12: -1.0762 REMARK 3 L13: -0.3190 L23: 0.9370 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.1897 S13: -0.1534 REMARK 3 S21: 0.0710 S22: 0.1317 S23: -0.1595 REMARK 3 S31: 0.1002 S32: 0.3640 S33: 0.0013 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 897 THROUGH 976 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5824 28.1762 -11.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: 0.6907 REMARK 3 T33: 0.5243 T12: 0.0869 REMARK 3 T13: -0.0420 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 1.0642 L22: 0.3694 REMARK 3 L33: 0.3806 L12: -0.0323 REMARK 3 L13: 0.0527 L23: 0.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: -0.0070 S13: 0.4188 REMARK 3 S21: 0.1346 S22: 0.0506 S23: 0.0357 REMARK 3 S31: -0.5000 S32: -0.8432 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 587 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1768 28.4479 -33.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.3344 REMARK 3 T33: 0.3420 T12: -0.0164 REMARK 3 T13: -0.0339 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.5713 L22: 0.8404 REMARK 3 L33: 1.0796 L12: 0.3401 REMARK 3 L13: 0.3609 L23: -0.5983 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0759 S13: 0.1386 REMARK 3 S21: 0.1173 S22: -0.0160 S23: -0.1680 REMARK 3 S31: -0.2262 S32: 0.1415 S33: 0.0078 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 654 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6109 16.4192 -13.6667 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.2138 REMARK 3 T33: 0.2487 T12: 0.0037 REMARK 3 T13: -0.0419 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.8159 L22: 0.6429 REMARK 3 L33: 2.0599 L12: 0.0506 REMARK 3 L13: -0.2548 L23: -0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0648 S13: 0.0067 REMARK 3 S21: 0.2313 S22: -0.0523 S23: -0.0462 REMARK 3 S31: 0.0195 S32: 0.1664 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 897 THROUGH 965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7939 -11.4623 7.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.8482 T22: 0.5455 REMARK 3 T33: 0.4157 T12: 0.0423 REMARK 3 T13: 0.0375 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6614 L22: 0.4992 REMARK 3 L33: 0.3027 L12: -0.1136 REMARK 3 L13: -0.2115 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.2696 S12: 0.5305 S13: -0.0403 REMARK 3 S21: -1.2944 S22: -0.1993 S23: -0.1226 REMARK 3 S31: -0.1865 S32: -0.1454 S33: 0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 587 through 608 or REMARK 3 resid 610 through 634 or resid 639 REMARK 3 through 666 or resid 668 through 744 or REMARK 3 resid 746 through 755 or resid 757 REMARK 3 through 759 or resid 780 through 789 or REMARK 3 resid 791 through 849 or resid 851 REMARK 3 through 965 or resid 980)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 587 through 608 or REMARK 3 resid 610 through 634 or resid 639 REMARK 3 through 666 or resid 668 through 744 or REMARK 3 resid 746 through 755 or resid 757 REMARK 3 through 789 or resid 791 through 849 or REMARK 3 resid 851 through 965 or resid 968)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000251832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS VERSION 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4PDO, 3KKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS PH5.5, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.65033 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.29350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.48762 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.65033 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.29350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 67.48762 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 465 GLU A 901 REMARK 465 GLU A 902 REMARK 465 GLY A 903 REMARK 465 VAL A 904 REMARK 465 SER B 635 REMARK 465 SER B 636 REMARK 465 GLY B 637 REMARK 465 LEU B 760 REMARK 465 SER B 761 REMARK 465 ARG B 762 REMARK 465 VAL B 763 REMARK 465 LEU B 764 REMARK 465 GLU B 765 REMARK 465 ASP B 766 REMARK 465 ASP B 767 REMARK 465 PRO B 768 REMARK 465 GLU B 769 REMARK 465 ALA B 770 REMARK 465 THR B 771 REMARK 465 TYR B 772 REMARK 465 THR B 773 REMARK 465 THR B 774 REMARK 465 SER B 775 REMARK 465 GLY B 776 REMARK 465 GLY B 777 REMARK 465 LYS B 778 REMARK 465 ILE B 779 REMARK 465 SER B 899 REMARK 465 GLY B 900 REMARK 465 GLU B 901 REMARK 465 GLU B 902 REMARK 465 GLY B 903 REMARK 465 VAL B 904 REMARK 465 LYS B 966 REMARK 465 ASP B 967 REMARK 465 GLN B 968 REMARK 465 VAL B 969 REMARK 465 ASN B 970 REMARK 465 THR B 971 REMARK 465 VAL B 972 REMARK 465 GLY B 973 REMARK 465 ILE B 974 REMARK 465 PRO B 975 REMARK 465 ILE B 976 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 769 HD22 ASN A 823 1.50 REMARK 500 O GLN B 856 O HOH B 1101 2.13 REMARK 500 O ILE B 781 O HOH B 1102 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 616 -120.94 -113.70 REMARK 500 ARG A 738 -11.46 76.10 REMARK 500 ASP A 739 40.26 -141.78 REMARK 500 ASP A 757 83.37 70.81 REMARK 500 LEU A 760 -91.12 -119.53 REMARK 500 ARG A 762 65.56 -101.73 REMARK 500 THR A 771 145.35 -171.90 REMARK 500 GLN A 938 30.51 -93.56 REMARK 500 ARG B 738 -9.38 74.32 REMARK 500 ASP B 739 39.78 -140.53 REMARK 500 ASP B 757 83.21 60.51 REMARK 500 GLN B 938 31.11 -92.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 663 OE2 REMARK 620 2 ASP A 757 OD1 99.7 REMARK 620 3 ACP A1001 O1B 155.4 100.7 REMARK 620 N 1 2 DBREF 7KJC A 590 976 UNP P29317 EPHA2_HUMAN 590 976 DBREF 7KJC B 590 976 UNP P29317 EPHA2_HUMAN 590 976 SEQADV 7KJC GLY A 587 UNP P29317 EXPRESSION TAG SEQADV 7KJC PRO A 588 UNP P29317 EXPRESSION TAG SEQADV 7KJC GLY A 589 UNP P29317 EXPRESSION TAG SEQADV 7KJC GLU A 901 UNP P29317 SER 901 ENGINEERED MUTATION SEQADV 7KJC GLY B 587 UNP P29317 EXPRESSION TAG SEQADV 7KJC PRO B 588 UNP P29317 EXPRESSION TAG SEQADV 7KJC GLY B 589 UNP P29317 EXPRESSION TAG SEQADV 7KJC GLU B 901 UNP P29317 SER 901 ENGINEERED MUTATION SEQRES 1 A 390 GLY PRO GLY ASP PRO HIS THR TYR GLU ASP PRO ASN GLN SEQRES 2 A 390 ALA VAL LEU LYS PHE THR THR GLU ILE HIS PRO SER CYS SEQRES 3 A 390 VAL THR ARG GLN LYS VAL ILE GLY ALA GLY GLU PHE GLY SEQRES 4 A 390 GLU VAL TYR LYS GLY MET LEU LYS THR SER SER GLY LYS SEQRES 5 A 390 LYS GLU VAL PRO VAL ALA ILE LYS THR LEU LYS ALA GLY SEQRES 6 A 390 TYR THR GLU LYS GLN ARG VAL ASP PHE LEU GLY GLU ALA SEQRES 7 A 390 GLY ILE MET GLY GLN PHE SER HIS HIS ASN ILE ILE ARG SEQRES 8 A 390 LEU GLU GLY VAL ILE SER LYS TYR LYS PRO MET MET ILE SEQRES 9 A 390 ILE THR GLU TYR MET GLU ASN GLY ALA LEU ASP LYS PHE SEQRES 10 A 390 LEU ARG GLU LYS ASP GLY GLU PHE SER VAL LEU GLN LEU SEQRES 11 A 390 VAL GLY MET LEU ARG GLY ILE ALA ALA GLY MET LYS TYR SEQRES 12 A 390 LEU ALA ASN MET ASN TYR VAL HIS ARG ASP LEU ALA ALA SEQRES 13 A 390 ARG ASN ILE LEU VAL ASN SER ASN LEU VAL CYS LYS VAL SEQRES 14 A 390 SER ASP PHE GLY LEU SER ARG VAL LEU GLU ASP ASP PRO SEQRES 15 A 390 GLU ALA THR TYR THR THR SER GLY GLY LYS ILE PRO ILE SEQRES 16 A 390 ARG TRP THR ALA PRO GLU ALA ILE SER TYR ARG LYS PHE SEQRES 17 A 390 THR SER ALA SER ASP VAL TRP SER PHE GLY ILE VAL MET SEQRES 18 A 390 TRP GLU VAL MET THR TYR GLY GLU ARG PRO TYR TRP GLU SEQRES 19 A 390 LEU SER ASN HIS GLU VAL MET LYS ALA ILE ASN ASP GLY SEQRES 20 A 390 PHE ARG LEU PRO THR PRO MET ASP CYS PRO SER ALA ILE SEQRES 21 A 390 TYR GLN LEU MET MET GLN CYS TRP GLN GLN GLU ARG ALA SEQRES 22 A 390 ARG ARG PRO LYS PHE ALA ASP ILE VAL SER ILE LEU ASP SEQRES 23 A 390 LYS LEU ILE ARG ALA PRO ASP SER LEU LYS THR LEU ALA SEQRES 24 A 390 ASP PHE ASP PRO ARG VAL SER ILE ARG LEU PRO SER THR SEQRES 25 A 390 SER GLY GLU GLU GLY VAL PRO PHE ARG THR VAL SER GLU SEQRES 26 A 390 TRP LEU GLU SER ILE LYS MET GLN GLN TYR THR GLU HIS SEQRES 27 A 390 PHE MET ALA ALA GLY TYR THR ALA ILE GLU LYS VAL VAL SEQRES 28 A 390 GLN MET THR ASN ASP ASP ILE LYS ARG ILE GLY VAL ARG SEQRES 29 A 390 LEU PRO GLY HIS GLN LYS ARG ILE ALA TYR SER LEU LEU SEQRES 30 A 390 GLY LEU LYS ASP GLN VAL ASN THR VAL GLY ILE PRO ILE SEQRES 1 B 390 GLY PRO GLY ASP PRO HIS THR TYR GLU ASP PRO ASN GLN SEQRES 2 B 390 ALA VAL LEU LYS PHE THR THR GLU ILE HIS PRO SER CYS SEQRES 3 B 390 VAL THR ARG GLN LYS VAL ILE GLY ALA GLY GLU PHE GLY SEQRES 4 B 390 GLU VAL TYR LYS GLY MET LEU LYS THR SER SER GLY LYS SEQRES 5 B 390 LYS GLU VAL PRO VAL ALA ILE LYS THR LEU LYS ALA GLY SEQRES 6 B 390 TYR THR GLU LYS GLN ARG VAL ASP PHE LEU GLY GLU ALA SEQRES 7 B 390 GLY ILE MET GLY GLN PHE SER HIS HIS ASN ILE ILE ARG SEQRES 8 B 390 LEU GLU GLY VAL ILE SER LYS TYR LYS PRO MET MET ILE SEQRES 9 B 390 ILE THR GLU TYR MET GLU ASN GLY ALA LEU ASP LYS PHE SEQRES 10 B 390 LEU ARG GLU LYS ASP GLY GLU PHE SER VAL LEU GLN LEU SEQRES 11 B 390 VAL GLY MET LEU ARG GLY ILE ALA ALA GLY MET LYS TYR SEQRES 12 B 390 LEU ALA ASN MET ASN TYR VAL HIS ARG ASP LEU ALA ALA SEQRES 13 B 390 ARG ASN ILE LEU VAL ASN SER ASN LEU VAL CYS LYS VAL SEQRES 14 B 390 SER ASP PHE GLY LEU SER ARG VAL LEU GLU ASP ASP PRO SEQRES 15 B 390 GLU ALA THR TYR THR THR SER GLY GLY LYS ILE PRO ILE SEQRES 16 B 390 ARG TRP THR ALA PRO GLU ALA ILE SER TYR ARG LYS PHE SEQRES 17 B 390 THR SER ALA SER ASP VAL TRP SER PHE GLY ILE VAL MET SEQRES 18 B 390 TRP GLU VAL MET THR TYR GLY GLU ARG PRO TYR TRP GLU SEQRES 19 B 390 LEU SER ASN HIS GLU VAL MET LYS ALA ILE ASN ASP GLY SEQRES 20 B 390 PHE ARG LEU PRO THR PRO MET ASP CYS PRO SER ALA ILE SEQRES 21 B 390 TYR GLN LEU MET MET GLN CYS TRP GLN GLN GLU ARG ALA SEQRES 22 B 390 ARG ARG PRO LYS PHE ALA ASP ILE VAL SER ILE LEU ASP SEQRES 23 B 390 LYS LEU ILE ARG ALA PRO ASP SER LEU LYS THR LEU ALA SEQRES 24 B 390 ASP PHE ASP PRO ARG VAL SER ILE ARG LEU PRO SER THR SEQRES 25 B 390 SER GLY GLU GLU GLY VAL PRO PHE ARG THR VAL SER GLU SEQRES 26 B 390 TRP LEU GLU SER ILE LYS MET GLN GLN TYR THR GLU HIS SEQRES 27 B 390 PHE MET ALA ALA GLY TYR THR ALA ILE GLU LYS VAL VAL SEQRES 28 B 390 GLN MET THR ASN ASP ASP ILE LYS ARG ILE GLY VAL ARG SEQRES 29 B 390 LEU PRO GLY HIS GLN LYS ARG ILE ALA TYR SER LEU LEU SEQRES 30 B 390 GLY LEU LYS ASP GLN VAL ASN THR VAL GLY ILE PRO ILE HET ACP A1001 47 HET MG A1002 1 HET GOL A1003 14 HET GOL A1004 14 HET GOL B1001 14 HET ACP B1002 47 HET GOL B1003 14 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG MG 2+ FORMUL 5 GOL 4(C3 H8 O3) FORMUL 10 HOH *343(H2 O) HELIX 1 AA1 ASP A 596 THR A 605 1 10 HELIX 2 AA2 HIS A 609 SER A 611 5 3 HELIX 3 AA3 THR A 653 GLY A 668 1 16 HELIX 4 AA4 LEU A 700 LYS A 707 1 8 HELIX 5 AA5 SER A 712 MET A 733 1 22 HELIX 6 AA6 ALA A 741 ARG A 743 5 3 HELIX 7 AA7 PRO A 780 THR A 784 5 5 HELIX 8 AA8 ALA A 785 TYR A 791 1 7 HELIX 9 AA9 THR A 795 THR A 812 1 18 HELIX 10 AB1 SER A 822 GLY A 833 1 12 HELIX 11 AB2 PRO A 843 TRP A 854 1 12 HELIX 12 AB3 GLU A 857 ARG A 861 5 5 HELIX 13 AB4 LYS A 863 ALA A 877 1 15 HELIX 14 AB5 PRO A 878 LYS A 882 5 5 HELIX 15 AB6 THR A 908 ILE A 916 1 9 HELIX 16 AB7 LYS A 917 GLN A 920 5 4 HELIX 17 AB8 TYR A 921 ALA A 928 1 8 HELIX 18 AB9 ALA A 932 VAL A 937 1 6 HELIX 19 AC1 THR A 940 ILE A 947 1 8 HELIX 20 AC2 LEU A 951 ASN A 970 1 20 HELIX 21 AC3 ASP B 596 THR B 605 1 10 HELIX 22 AC4 HIS B 609 SER B 611 5 3 HELIX 23 AC5 THR B 653 GLY B 668 1 16 HELIX 24 AC6 LEU B 700 LYS B 707 1 8 HELIX 25 AC7 SER B 712 MET B 733 1 22 HELIX 26 AC8 ALA B 741 ARG B 743 5 3 HELIX 27 AC9 PRO B 780 THR B 784 5 5 HELIX 28 AD1 ALA B 785 TYR B 791 1 7 HELIX 29 AD2 THR B 795 THR B 812 1 18 HELIX 30 AD3 SER B 822 GLY B 833 1 12 HELIX 31 AD4 PRO B 843 TRP B 854 1 12 HELIX 32 AD5 GLU B 857 ARG B 861 5 5 HELIX 33 AD6 LYS B 863 ALA B 877 1 15 HELIX 34 AD7 PRO B 878 LYS B 882 5 5 HELIX 35 AD8 THR B 908 ILE B 916 1 9 HELIX 36 AD9 LYS B 917 GLN B 920 5 4 HELIX 37 AE1 TYR B 921 ALA B 928 1 8 HELIX 38 AE2 ALA B 932 VAL B 937 1 6 HELIX 39 AE3 THR B 940 ILE B 947 1 8 HELIX 40 AE4 LEU B 951 LEU B 965 1 15 SHEET 1 AA1 5 VAL A 613 ALA A 621 0 SHEET 2 AA1 5 GLU A 626 LYS A 633 -1 O LYS A 629 N LYS A 617 SHEET 3 AA1 5 GLU A 640 THR A 647 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 689 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 3 GLY A 698 ALA A 699 0 SHEET 2 AA2 3 ILE A 745 VAL A 747 -1 O VAL A 747 N GLY A 698 SHEET 3 AA2 3 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 SHEET 1 AA3 6 ILE A 974 PRO A 975 0 SHEET 2 AA3 6 VAL B 613 ALA B 621 -1 O VAL B 618 N ILE A 974 SHEET 3 AA3 6 GLU B 626 LEU B 632 -1 O VAL B 627 N GLY B 620 SHEET 4 AA3 6 VAL B 641 THR B 647 -1 O VAL B 643 N GLY B 630 SHEET 5 AA3 6 MET B 689 GLU B 693 -1 O ILE B 690 N LYS B 646 SHEET 6 AA3 6 LEU B 678 ILE B 682 -1 N GLY B 680 O ILE B 691 SHEET 1 AA4 3 GLY B 698 ALA B 699 0 SHEET 2 AA4 3 ILE B 745 VAL B 747 -1 O VAL B 747 N GLY B 698 SHEET 3 AA4 3 CYS B 753 VAL B 755 -1 O LYS B 754 N LEU B 746 LINK OE2 GLU A 663 MG MG A1002 1555 1555 2.92 LINK OD1 ASP A 757 MG MG A1002 1555 1555 2.76 LINK O1B ACP A1001 MG MG A1002 1555 1555 2.17 CISPEP 1 LYS A 686 PRO A 687 0 -1.08 CISPEP 2 LYS B 686 PRO B 687 0 -1.88 CRYST1 121.639 54.587 135.538 90.00 95.22 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008221 0.000000 0.000752 0.00000 SCALE2 0.000000 0.018319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007409 0.00000 MTRIX1 1 -0.136612 0.126746 0.982483 63.51120 1 MTRIX2 1 -0.527599 -0.848725 0.036129 27.07864 1 MTRIX3 1 0.838437 -0.513421 0.182818 10.10205 1