HEADER RNA-BINDING PROTEIN/RNA 28-OCT-20 7KKV TITLE CRYSTAL STRUCTURE OF BACILLUS HALODURANS OAPB IN COMPLEX WITH ITS OLE TITLE 2 RNA TARGET (NATIVE, CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLE-ASSOCIATED PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OAPB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OLE* RNA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS (STRAIN ATCC BAA-125 / DSM SOURCE 3 18197 / FERM 7344 / JCM 9153 / C-125); SOURCE 4 ORGANISM_TAXID: 272558; SOURCE 5 STRAIN: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125; SOURCE 6 GENE: BH0157; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 12 ORGANISM_TAXID: 272558 KEYWDS RIBONUCLEOPROTEIN COMPLEX, OLE RNA, NONCODING RNA, RNA, RNA-BINDING KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,R.R.BREAKER REVDAT 3 18-OCT-23 7KKV 1 REMARK REVDAT 2 10-MAR-21 7KKV 1 JRNL REVDAT 1 03-MAR-21 7KKV 0 JRNL AUTH Y.YANG,K.A.HARRIS,D.L.WIDNER,R.R.BREAKER JRNL TITL STRUCTURE OF A BACTERIAL OAPB PROTEIN WITH ITS OLE RNA JRNL TITL 2 TARGET GIVES INSIGHTS INTO THE ARCHITECTURE OF THE OLE JRNL TITL 3 RIBONUCLEOPROTEIN COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33619097 JRNL DOI 10.1073/PNAS.2020393118 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 25240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8750 - 4.1590 0.99 2799 148 0.1451 0.1706 REMARK 3 2 4.1590 - 3.3015 0.99 2694 142 0.1454 0.1419 REMARK 3 3 3.3015 - 2.8843 0.99 2686 140 0.1634 0.1808 REMARK 3 4 2.8843 - 2.6206 0.99 2663 140 0.2427 0.3147 REMARK 3 5 2.6206 - 2.4328 0.99 2645 139 0.2312 0.2753 REMARK 3 6 2.4328 - 2.2894 0.99 2645 139 0.2313 0.2455 REMARK 3 7 2.2894 - 2.1748 0.99 2637 138 0.2509 0.2862 REMARK 3 8 2.1748 - 2.0801 0.98 2607 137 0.2739 0.3011 REMARK 3 9 2.0801 - 2.0000 0.98 2603 138 0.3225 0.3260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2278 33.9047 121.1426 REMARK 3 T TENSOR REMARK 3 T11: 0.5741 T22: 0.8654 REMARK 3 T33: 0.6667 T12: -0.0063 REMARK 3 T13: 0.0970 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 2.1929 L22: 7.6135 REMARK 3 L33: 7.4624 L12: -0.7758 REMARK 3 L13: 1.5140 L23: -0.8153 REMARK 3 S TENSOR REMARK 3 S11: 0.3051 S12: -1.3417 S13: -0.2433 REMARK 3 S21: 0.4892 S22: 0.1703 S23: 1.1635 REMARK 3 S31: 0.5097 S32: -1.6069 S33: -0.8540 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8148 30.6022 108.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.7195 T22: 0.6088 REMARK 3 T33: 0.5978 T12: 0.2006 REMARK 3 T13: -0.0293 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 5.7082 L22: 3.9501 REMARK 3 L33: 4.0806 L12: 1.2727 REMARK 3 L13: -0.0854 L23: -1.2124 REMARK 3 S TENSOR REMARK 3 S11: 0.1775 S12: 0.6374 S13: -0.2117 REMARK 3 S21: -0.7590 S22: 0.1239 S23: -0.3126 REMARK 3 S31: 1.5129 S32: 0.3744 S33: -0.1273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0425 39.1537 118.7079 REMARK 3 T TENSOR REMARK 3 T11: 0.5978 T22: 0.6285 REMARK 3 T33: 0.5416 T12: 0.1677 REMARK 3 T13: 0.0863 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 4.4825 L22: 3.6351 REMARK 3 L33: 4.4011 L12: 1.2848 REMARK 3 L13: 1.3303 L23: -0.5344 REMARK 3 S TENSOR REMARK 3 S11: 0.3515 S12: 0.0726 S13: 0.6679 REMARK 3 S21: 0.3373 S22: -0.2946 S23: -0.0677 REMARK 3 S31: -0.2445 S32: -0.1629 S33: -0.0221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6076 34.8552 116.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.4904 T22: 0.6520 REMARK 3 T33: 0.5997 T12: 0.1000 REMARK 3 T13: 0.1133 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 3.6825 L22: 2.2809 REMARK 3 L33: 4.9149 L12: 0.6141 REMARK 3 L13: 1.4943 L23: -0.9866 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0491 S13: 0.2303 REMARK 3 S21: 0.0560 S22: 0.1344 S23: 0.5788 REMARK 3 S31: 0.3755 S32: -0.9647 S33: -0.2209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0558 37.7808 133.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.9581 T22: 1.0076 REMARK 3 T33: 0.6683 T12: 0.0690 REMARK 3 T13: 0.1195 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 3.1843 L22: 7.3693 REMARK 3 L33: 4.2967 L12: 1.6592 REMARK 3 L13: 1.9188 L23: 0.7807 REMARK 3 S TENSOR REMARK 3 S11: 0.2088 S12: -1.6557 S13: 0.7660 REMARK 3 S21: 1.6143 S22: -0.1158 S23: 0.7914 REMARK 3 S31: 0.1058 S32: -0.4891 S33: -0.0617 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4052 25.4692 126.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.9495 T22: 0.6703 REMARK 3 T33: 0.7701 T12: 0.0574 REMARK 3 T13: -0.0577 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 6.1046 L22: 8.0928 REMARK 3 L33: 7.4618 L12: 0.2260 REMARK 3 L13: 2.2897 L23: 1.9811 REMARK 3 S TENSOR REMARK 3 S11: 0.7103 S12: -1.1059 S13: -0.5975 REMARK 3 S21: 1.2528 S22: -0.2756 S23: 0.4956 REMARK 3 S31: 1.7054 S32: -0.1973 S33: -0.3570 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 485 THROUGH 509 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2303 37.1409 98.6491 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.7697 REMARK 3 T33: 0.6243 T12: 0.1107 REMARK 3 T13: 0.0962 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.9882 L22: 1.2553 REMARK 3 L33: 0.0882 L12: -1.0261 REMARK 3 L13: 0.2912 L23: 0.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 0.5244 S13: 0.2561 REMARK 3 S21: 0.0565 S22: 0.1242 S23: -0.0536 REMARK 3 S31: 0.0748 S32: -0.0987 S33: -0.0697 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 510 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4066 32.3159 77.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.6817 T22: 1.0226 REMARK 3 T33: 0.6144 T12: 0.1941 REMARK 3 T13: 0.0949 T23: 0.0628 REMARK 3 L TENSOR REMARK 3 L11: 1.9738 L22: 0.6054 REMARK 3 L33: 2.1158 L12: 0.0770 REMARK 3 L13: -1.3528 L23: -0.9271 REMARK 3 S TENSOR REMARK 3 S11: 0.3010 S12: 0.9850 S13: 0.4363 REMARK 3 S21: -0.1309 S22: 0.1428 S23: 0.1166 REMARK 3 S31: -0.2187 S32: -1.0160 S33: -0.3977 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 525 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6162 38.9105 81.9597 REMARK 3 T TENSOR REMARK 3 T11: 1.0021 T22: 1.6026 REMARK 3 T33: 0.7747 T12: 0.3445 REMARK 3 T13: 0.2689 T23: 0.2164 REMARK 3 L TENSOR REMARK 3 L11: 4.5576 L22: 3.8121 REMARK 3 L33: 2.4400 L12: -2.3238 REMARK 3 L13: -1.6064 L23: -1.0295 REMARK 3 S TENSOR REMARK 3 S11: 0.4997 S12: 1.7662 S13: 0.8795 REMARK 3 S21: -1.0185 S22: 0.0114 S23: -0.0151 REMARK 3 S31: -0.2933 S32: -0.9412 S33: -0.6552 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6889 49.0641 78.9736 REMARK 3 T TENSOR REMARK 3 T11: 1.5916 T22: 2.6286 REMARK 3 T33: 1.5794 T12: 0.2443 REMARK 3 T13: 0.3379 T23: 0.7945 REMARK 3 L TENSOR REMARK 3 L11: 6.4059 L22: 0.4898 REMARK 3 L33: 1.7468 L12: 0.3286 REMARK 3 L13: -2.2968 L23: 0.5426 REMARK 3 S TENSOR REMARK 3 S11: -0.7668 S12: 2.2694 S13: 1.7727 REMARK 3 S21: -2.3176 S22: 0.9191 S23: -0.1259 REMARK 3 S31: -0.5367 S32: 1.7843 S33: -0.0620 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 535 THROUGH 539 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8369 38.9873 91.2233 REMARK 3 T TENSOR REMARK 3 T11: 0.5400 T22: 1.0285 REMARK 3 T33: 0.7017 T12: 0.1606 REMARK 3 T13: 0.0509 T23: 0.0933 REMARK 3 L TENSOR REMARK 3 L11: 2.8944 L22: 1.6644 REMARK 3 L33: 4.4303 L12: 1.1668 REMARK 3 L13: 0.8391 L23: 0.7300 REMARK 3 S TENSOR REMARK 3 S11: 0.4454 S12: 1.2211 S13: 0.4046 REMARK 3 S21: -0.3179 S22: -0.0810 S23: 0.2941 REMARK 3 S31: 0.1087 S32: -0.5042 S33: 0.0751 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 540 THROUGH 543 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2321 47.0114 104.4675 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.8260 REMARK 3 T33: 0.7884 T12: 0.1080 REMARK 3 T13: 0.0588 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.3336 L22: 1.5362 REMARK 3 L33: 2.1794 L12: 1.1003 REMARK 3 L13: 1.4431 L23: -0.3319 REMARK 3 S TENSOR REMARK 3 S11: -0.4053 S12: 0.4322 S13: 1.0558 REMARK 3 S21: 0.4326 S22: 0.1548 S23: 0.7034 REMARK 3 S31: -0.0771 S32: -0.3571 S33: 0.2118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.16_3549 REMARK 200 STARTING MODEL: 7K9D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES (PH 7.0 TO 7.5), 200 MM REMARK 280 NH4CL AND 39 TO 42.5% 2-METHYL-2,4-PENTANEDIOL (MPD), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.47350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.56354 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.95067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.47350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.56354 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.95067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.47350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.56354 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.95067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.47350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.56354 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.95067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.47350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.56354 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.95067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.47350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.56354 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.95067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.12708 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 131.90133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.12708 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 131.90133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.12708 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 131.90133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.12708 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 131.90133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.12708 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 131.90133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.12708 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 131.90133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 861 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 903 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 917 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 ALA A 95 REMARK 465 ASP A 96 REMARK 465 LEU A 97 REMARK 465 LEU A 98 REMARK 465 LYS A 99 REMARK 465 GLU A 100 REMARK 465 GLY A 101 REMARK 465 GLU A 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -90.42 -126.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 492 OP1 REMARK 620 2 A B 506 OP1 80.7 REMARK 620 3 HOH B 725 O 73.6 70.8 REMARK 620 4 HOH B 737 O 163.7 88.7 91.2 REMARK 620 5 HOH B 847 O 107.1 86.4 156.9 84.4 REMARK 620 6 HOH B 896 O 109.5 169.9 111.1 81.3 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 734 O REMARK 620 2 HOH B 800 O 93.6 REMARK 620 3 HOH B 810 O 88.6 94.3 REMARK 620 4 HOH B 902 O 99.0 85.4 172.4 REMARK 620 5 HOH B 909 O 173.1 84.0 98.0 74.4 REMARK 620 6 HOH B 918 O 87.2 175.4 81.2 98.9 95.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7K9B RELATED DB: PDB REMARK 900 ENTRY FROM THE SAME PAPER REMARK 900 RELATED ID: 7K9C RELATED DB: PDB REMARK 900 ENTRY FROM THE SAME PAPER REMARK 900 RELATED ID: 7K9D RELATED DB: PDB REMARK 900 ENTRY FROM THE SAME PAPER REMARK 900 RELATED ID: 7K9E RELATED DB: PDB REMARK 900 ENTRY FROM THE SAME PAPER DBREF 7KKV A 5 102 UNP Q9KGD7 Q9KGD7_BACHD 5 102 DBREF 7KKV B 484 543 PDB 7KKV 7KKV 484 543 SEQRES 1 A 98 GLY PRO SER PRO GLU ILE GLY GLN ILE VAL LYS ILE VAL SEQRES 2 A 98 LYS GLY ARG ASP ARG ASP GLN PHE SER VAL ILE ILE LYS SEQRES 3 A 98 ARG VAL ASP ASP ARG PHE VAL TYR ILE ALA ASP GLY ASP SEQRES 4 A 98 LYS ARG LYS VAL ASP ARG ALA LYS ARG LYS ASN MET ASN SEQRES 5 A 98 HIS LEU LYS LEU ILE ASP HIS ILE SER PRO GLU VAL ARG SEQRES 6 A 98 HIS SER PHE GLU GLU THR GLY LYS VAL THR ASN GLY LYS SEQRES 7 A 98 LEU ARG PHE ALA LEU LYS LYS PHE LEU GLU GLU HIS ALA SEQRES 8 A 98 ASP LEU LEU LYS GLU GLY GLU SEQRES 1 B 60 GTP G C C A G U C U G G C G SEQRES 2 B 60 U U U G G U G A C A G C G SEQRES 3 B 60 C C A A G U U C U U C G G SEQRES 4 B 60 A A U U G G G A A A U C C SEQRES 5 B 60 U A C U G G C C HET GTP B 484 32 HET MPD A 201 8 HET EPE B 601 15 HET MG B 602 1 HET MG B 603 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION HETSYN EPE HEPES FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MPD C6 H14 O2 FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *278(H2 O) HELIX 1 AA1 LYS A 46 ALA A 50 5 5 HELIX 2 AA2 SER A 65 GLY A 76 1 12 HELIX 3 AA3 THR A 79 GLU A 93 1 15 SHEET 1 AA1 5 LYS A 51 ASN A 54 0 SHEET 2 AA1 5 PHE A 36 ALA A 40 -1 N VAL A 37 O LYS A 53 SHEET 3 AA1 5 PHE A 25 ARG A 31 -1 N ILE A 29 O TYR A 38 SHEET 4 AA1 5 GLN A 12 ILE A 16 -1 N GLN A 12 O ILE A 28 SHEET 5 AA1 5 LEU A 58 ILE A 64 -1 O HIS A 63 N ILE A 13 LINK O3' GTP B 484 P G B 485 1555 1555 1.60 LINK OP1 U B 492 MG MG B 603 1555 1555 2.39 LINK OP1 A B 506 MG MG B 603 1555 1555 2.40 LINK MG MG B 602 O HOH B 734 1555 1555 2.08 LINK MG MG B 602 O HOH B 800 1555 1555 2.08 LINK MG MG B 602 O HOH B 810 1555 1555 2.08 LINK MG MG B 602 O HOH B 902 1555 6556 2.08 LINK MG MG B 602 O HOH B 909 1555 6556 2.07 LINK MG MG B 602 O HOH B 918 1555 1555 2.08 LINK MG MG B 603 O HOH B 725 1555 1555 2.07 LINK MG MG B 603 O HOH B 737 1555 1555 2.09 LINK MG MG B 603 O HOH B 847 1555 1555 2.08 LINK MG MG B 603 O HOH B 896 1555 1555 2.08 CRYST1 98.947 98.947 197.852 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010106 0.005835 0.000000 0.00000 SCALE2 0.000000 0.011670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005054 0.00000