HEADER OXIDOREDUCTASE 29-OCT-20 7KL8 TITLE STRUCTURE OF F420 BINDING PROTEIN RV1558 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS WITH F420 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAZAFLAVIN-DEPENDENT NITROREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RV1558,F420H(2)-DEPENDENT QUINONE REDUCTASE,NITROREDUCTASE, COMPND 5 NITROREDUCTASE FAMILY DEAZAFLAVIN-DEPENDENT OXIDOREDUCTASE; COMPND 6 EC: 1.-.-.-,1.1.98.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CAB90_01754, DSI38_14865, E5M52_02625, ERS007663_00055, SOURCE 5 ERS007665_00099, ERS007670_00350, ERS007679_03028, ERS007681_00165, SOURCE 6 ERS007688_03909, ERS007703_00001, ERS007720_01803, ERS007722_00045, SOURCE 7 ERS007741_00109, ERS013471_00965, ERS023446_01350, ERS024276_03277, SOURCE 8 ERS027646_02383, ERS027659_01827, ERS027661_02140, ERS075361_00097, SOURCE 9 ERS094182_01470, F6W99_00117, FRD82_03855, SAMEA2683035_03185; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS F420, FDOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.M.LEE,L.L.TAN,C.J.JACKSON REVDAT 3 18-OCT-23 7KL8 1 REMARK REVDAT 2 06-OCT-21 7KL8 1 JRNL REVDAT 1 24-MAR-21 7KL8 0 JRNL AUTH W.W.ARAGAW,B.M.LEE,X.YANG,M.D.ZIMMERMAN,M.GENGENBACHER, JRNL AUTH 2 V.DARTOIS,W.K.CHUI,C.J.JACKSON,T.DICK JRNL TITL POTENCY BOOST OF A MYCOBACTERIUM TUBERCULOSIS DIHYDROFOLATE JRNL TITL 2 REDUCTASE INHIBITOR BY MULTIENZYME F 420 H 2 -DEPENDENT JRNL TITL 3 REDUCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34161270 JRNL DOI 10.1073/PNAS.2025172118 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2419 ; 0.009 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 2154 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3312 ; 1.248 ; 1.858 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5003 ; 0.996 ; 2.897 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;34.573 ;23.084 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;14.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2649 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1118 ; 2.095 ; 4.734 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1117 ; 2.095 ; 4.732 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1394 ; 3.276 ; 7.098 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1395 ; 3.275 ; 7.100 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 3.225 ; 5.458 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1276 ; 2.991 ; 5.327 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1883 ; 4.637 ; 7.859 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2662 ; 7.466 ;56.296 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2661 ; 7.481 ;56.278 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0640 -25.5150 -46.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.1544 REMARK 3 T33: 0.3938 T12: 0.0873 REMARK 3 T13: -0.0496 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 4.4060 L22: 5.3083 REMARK 3 L33: 1.9787 L12: -1.2317 REMARK 3 L13: 0.4282 L23: 0.8141 REMARK 3 S TENSOR REMARK 3 S11: 0.2646 S12: 0.5524 S13: -0.3228 REMARK 3 S21: -0.5320 S22: -0.0671 S23: 0.5380 REMARK 3 S31: 0.0402 S32: -0.1368 S33: -0.1975 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3940 -3.9710 -29.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.1213 REMARK 3 T33: 0.3195 T12: 0.1060 REMARK 3 T13: 0.0826 T23: 0.1095 REMARK 3 L TENSOR REMARK 3 L11: 2.3254 L22: 5.1451 REMARK 3 L33: 3.2363 L12: 1.4301 REMARK 3 L13: -0.2051 L23: 0.3209 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.3715 S13: -0.0813 REMARK 3 S21: 0.6335 S22: -0.0018 S23: 0.0566 REMARK 3 S31: -0.3117 S32: 0.1044 S33: -0.0322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7KL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000251223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953719973564 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30473 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.469 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 78.50 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 5.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3R5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.8, 0.5 M REMARK 280 AMMONIUM SULFATE, 1 M LITHIUM SULFATE, AND 3 % GLYCEROL (V/V), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.77200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.77200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.77200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.77200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.77200 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.77200 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.77200 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.77200 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.77200 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.77200 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.77200 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.77200 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.77200 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 42.38600 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 127.15800 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 42.38600 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 42.38600 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 42.38600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 127.15800 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 42.38600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 127.15800 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 42.38600 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 127.15800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 42.38600 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 127.15800 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 127.15800 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 42.38600 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 127.15800 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 42.38600 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 42.38600 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 42.38600 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 127.15800 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 42.38600 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 42.38600 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 127.15800 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 127.15800 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 127.15800 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 42.38600 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 127.15800 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 42.38600 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 127.15800 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 42.38600 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 42.38600 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 42.38600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 7 43.12 -105.69 REMARK 500 TYR B 7 -7.52 89.15 REMARK 500 SER B 70 -62.53 -95.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: COENZYME F420-3 REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 6J4 A 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 6J2 GGL GGL GLU REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6J4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F42 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 DBREF1 7KL8 A 6 145 UNP A0A045KKP3_MYCTX DBREF2 7KL8 A A0A045KKP3 6 145 DBREF1 7KL8 B 6 145 UNP A0A045KKP3_MYCTX DBREF2 7KL8 B A0A045KKP3 6 145 SEQRES 1 A 140 GLU TYR ALA PRO SER PRO LEU ASP TRP SER ARG GLU GLN SEQRES 2 A 140 ALA ASP THR TYR MET LYS SER GLY GLY THR GLU GLY THR SEQRES 3 A 140 GLN LEU GLN GLY LYS PRO VAL ILE LEU LEU THR THR VAL SEQRES 4 A 140 GLY ALA LYS THR GLY LYS LEU ARG LYS THR PRO LEU MET SEQRES 5 A 140 ARG VAL GLU HIS ASP GLY GLN TYR ALA ILE VAL ALA SER SEQRES 6 A 140 LEU GLY GLY ALA PRO LYS ASN PRO VAL TRP TYR HIS ASN SEQRES 7 A 140 VAL VAL LYS ASN PRO ARG VAL GLU LEU GLN ASP GLY THR SEQRES 8 A 140 VAL THR GLY ASP TYR ASP ALA ARG GLU VAL PHE GLY ASP SEQRES 9 A 140 GLU LYS ALA ILE TRP TRP GLN ARG ALA VAL ALA VAL TRP SEQRES 10 A 140 PRO ASP TYR ALA SER TYR GLN THR LYS THR ASP ARG GLN SEQRES 11 A 140 ILE PRO VAL PHE VAL LEU THR PRO VAL ARG SEQRES 1 B 140 GLU TYR ALA PRO SER PRO LEU ASP TRP SER ARG GLU GLN SEQRES 2 B 140 ALA ASP THR TYR MET LYS SER GLY GLY THR GLU GLY THR SEQRES 3 B 140 GLN LEU GLN GLY LYS PRO VAL ILE LEU LEU THR THR VAL SEQRES 4 B 140 GLY ALA LYS THR GLY LYS LEU ARG LYS THR PRO LEU MET SEQRES 5 B 140 ARG VAL GLU HIS ASP GLY GLN TYR ALA ILE VAL ALA SER SEQRES 6 B 140 LEU GLY GLY ALA PRO LYS ASN PRO VAL TRP TYR HIS ASN SEQRES 7 B 140 VAL VAL LYS ASN PRO ARG VAL GLU LEU GLN ASP GLY THR SEQRES 8 B 140 VAL THR GLY ASP TYR ASP ALA ARG GLU VAL PHE GLY ASP SEQRES 9 B 140 GLU LYS ALA ILE TRP TRP GLN ARG ALA VAL ALA VAL TRP SEQRES 10 B 140 PRO ASP TYR ALA SER TYR GLN THR LYS THR ASP ARG GLN SEQRES 11 B 140 ILE PRO VAL PHE VAL LEU THR PRO VAL ARG HET 6J4 A 401 62 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET F42 B 201 53 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM 6J4 COENZYME F420-3 HETNAM SO4 SULFATE ION HETNAM F42 COENZYME F420 FORMUL 3 6J4 C34 H43 N6 O21 P FORMUL 4 SO4 6(O4 S 2-) FORMUL 8 F42 C29 H36 N5 O18 P FORMUL 11 HOH *29(H2 O) HELIX 1 AA1 SER A 10 SER A 25 1 16 HELIX 2 AA2 VAL A 79 ASN A 87 1 9 HELIX 3 AA3 PHE A 107 TRP A 122 1 16 HELIX 4 AA4 PRO A 123 LYS A 131 1 9 HELIX 5 AA5 SER B 10 SER B 25 1 16 HELIX 6 AA6 VAL B 79 ASN B 87 1 9 HELIX 7 AA7 PHE B 107 TRP B 122 1 16 HELIX 8 AA8 PRO B 123 LYS B 131 1 9 SHEET 1 AA1 3 GLN A 32 LEU A 33 0 SHEET 2 AA1 3 LYS A 36 VAL A 44 -1 O LYS A 36 N LEU A 33 SHEET 3 AA1 3 LEU A 51 MET A 57 -1 O THR A 54 N LEU A 41 SHEET 1 AA2 7 GLN A 32 LEU A 33 0 SHEET 2 AA2 7 LYS A 36 VAL A 44 -1 O LYS A 36 N LEU A 33 SHEET 3 AA2 7 ARG A 89 ASP A 94 -1 O GLU A 91 N THR A 42 SHEET 4 AA2 7 VAL A 97 GLU A 105 -1 O VAL A 97 N ASP A 94 SHEET 5 AA2 7 VAL A 138 PRO A 143 -1 O VAL A 140 N ARG A 104 SHEET 6 AA2 7 GLN A 64 VAL A 68 -1 N TYR A 65 O LEU A 141 SHEET 7 AA2 7 VAL A 59 HIS A 61 -1 N HIS A 61 O GLN A 64 SHEET 1 AA3 3 GLN B 32 LEU B 33 0 SHEET 2 AA3 3 LYS B 36 VAL B 44 -1 O LYS B 36 N LEU B 33 SHEET 3 AA3 3 LEU B 51 MET B 57 -1 O THR B 54 N LEU B 41 SHEET 1 AA4 7 GLN B 32 LEU B 33 0 SHEET 2 AA4 7 LYS B 36 VAL B 44 -1 O LYS B 36 N LEU B 33 SHEET 3 AA4 7 ARG B 89 ASP B 94 -1 O GLU B 91 N THR B 42 SHEET 4 AA4 7 VAL B 97 GLU B 105 -1 O VAL B 97 N ASP B 94 SHEET 5 AA4 7 VAL B 138 PRO B 143 -1 O VAL B 140 N ARG B 104 SHEET 6 AA4 7 GLN B 64 VAL B 68 -1 N TYR B 65 O LEU B 141 SHEET 7 AA4 7 VAL B 59 HIS B 61 -1 N VAL B 59 O ALA B 66 SITE 1 AC1 26 TYR A 7 TRP A 14 SER A 15 GLN A 18 SITE 2 AC1 26 GLY A 45 ALA A 46 LYS A 47 THR A 48 SITE 3 AC1 26 ARG A 52 THR A 54 PRO A 55 LEU A 56 SITE 4 AC1 26 MET A 57 VAL A 68 SER A 70 LEU A 71 SITE 5 AC1 26 PRO A 78 VAL A 79 TRP A 80 HIS A 82 SITE 6 AC1 26 ASN A 83 TYR A 125 SO4 A 404 HOH A 501 SITE 7 AC1 26 HOH A 508 ASP B 109 SITE 1 AC2 4 ARG A 89 ARG A 145 LYS B 50 ARG B 52 SITE 1 AC3 4 LYS A 76 ASN A 77 HIS A 82 ARG A 134 SITE 1 AC4 5 LYS A 50 ARG A 52 ASP A 109 6J4 A 401 SITE 2 AC4 5 ARG B 89 SITE 1 AC5 3 PRO A 75 THR A 132 ASP A 133 SITE 1 AC6 20 TYR B 7 SER B 15 GLN B 18 GLY B 45 SITE 2 AC6 20 ALA B 46 LYS B 47 THR B 48 ARG B 52 SITE 3 AC6 20 THR B 54 PRO B 55 LEU B 56 MET B 57 SITE 4 AC6 20 VAL B 68 SER B 70 LEU B 71 PRO B 78 SITE 5 AC6 20 VAL B 79 TRP B 80 ASN B 83 TYR B 125 SITE 1 AC7 3 LYS B 76 ASN B 77 HIS B 82 SITE 1 AC8 3 PRO B 75 THR B 132 ASP B 133 CRYST1 169.544 169.544 169.544 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005898 0.00000