HEADER VIRAL PROTEIN 05-NOV-20 7KNR TITLE THE CRYSTAL STRUCTURE OF THE I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988558 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,S.W.WHITE REVDAT 3 18-OCT-23 7KNR 1 REMARK REVDAT 2 11-OCT-23 7KNR 1 JRNL REVDAT 1 10-NOV-21 7KNR 0 JRNL AUTH M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF THE I38T MUTANT PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988558 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 9572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4200 - 3.5800 0.96 3067 186 0.1765 0.2252 REMARK 3 2 3.5800 - 2.8400 0.98 2998 165 0.2335 0.2546 REMARK 3 3 2.8400 - 2.4800 0.99 3039 117 0.2866 0.3902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.366 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.748 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1556 REMARK 3 ANGLE : 0.702 2104 REMARK 3 CHIRALITY : 0.047 218 REMARK 3 PLANARITY : 0.005 264 REMARK 3 DIHEDRAL : 6.869 223 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1872 16.1631 3.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.7221 T22: 0.6978 REMARK 3 T33: 0.4947 T12: 0.0367 REMARK 3 T13: -0.1250 T23: -0.1765 REMARK 3 L TENSOR REMARK 3 L11: 3.7325 L22: 5.9470 REMARK 3 L33: 8.5165 L12: -1.0457 REMARK 3 L13: -1.6422 L23: -3.1303 REMARK 3 S TENSOR REMARK 3 S11: -0.1709 S12: -0.1683 S13: 0.2972 REMARK 3 S21: -1.4632 S22: 0.4059 S23: -0.1678 REMARK 3 S31: -0.1602 S32: -1.1940 S33: -0.3854 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9182 5.3695 4.1089 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.7419 REMARK 3 T33: 0.5819 T12: -0.0800 REMARK 3 T13: -0.0219 T23: -0.2280 REMARK 3 L TENSOR REMARK 3 L11: 6.7563 L22: 8.6704 REMARK 3 L33: 6.6443 L12: 0.4458 REMARK 3 L13: 1.2187 L23: -2.9403 REMARK 3 S TENSOR REMARK 3 S11: 0.1838 S12: 0.9886 S13: -0.4176 REMARK 3 S21: -0.8773 S22: 0.1418 S23: 0.9504 REMARK 3 S31: 0.8700 S32: -0.9892 S33: -0.2905 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7346 3.6426 16.3341 REMARK 3 T TENSOR REMARK 3 T11: 0.4129 T22: 0.5274 REMARK 3 T33: 0.5078 T12: 0.0739 REMARK 3 T13: 0.0737 T23: -0.1944 REMARK 3 L TENSOR REMARK 3 L11: 0.8552 L22: 4.2679 REMARK 3 L33: 4.8544 L12: 0.6674 REMARK 3 L13: 0.7436 L23: -1.2869 REMARK 3 S TENSOR REMARK 3 S11: -0.2249 S12: 0.1146 S13: -0.0180 REMARK 3 S21: 0.0310 S22: -0.0386 S23: -0.1352 REMARK 3 S31: 0.4717 S32: 0.1626 S33: 0.2400 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5828 -3.9109 22.8264 REMARK 3 T TENSOR REMARK 3 T11: 0.4434 T22: 0.5860 REMARK 3 T33: 0.4861 T12: -0.0186 REMARK 3 T13: 0.1865 T23: -0.1229 REMARK 3 L TENSOR REMARK 3 L11: 2.8981 L22: 4.6576 REMARK 3 L33: 3.1308 L12: -0.0083 REMARK 3 L13: -0.6012 L23: -0.9049 REMARK 3 S TENSOR REMARK 3 S11: -0.2364 S12: -0.4566 S13: 0.0162 REMARK 3 S21: 0.5481 S22: -0.0659 S23: 0.3808 REMARK 3 S31: 0.0912 S32: -0.4149 S33: 0.1759 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8967 8.8066 26.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 1.5325 REMARK 3 T33: 0.7195 T12: 0.1623 REMARK 3 T13: 0.1780 T23: -0.2348 REMARK 3 L TENSOR REMARK 3 L11: 5.1175 L22: 9.3280 REMARK 3 L33: 3.8702 L12: 5.6177 REMARK 3 L13: 3.0087 L23: 0.7112 REMARK 3 S TENSOR REMARK 3 S11: 0.1724 S12: -0.0651 S13: 0.9159 REMARK 3 S21: 1.1933 S22: 0.2351 S23: 1.5499 REMARK 3 S31: -0.4493 S32: -0.2586 S33: -0.5053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8605 8.0631 29.2602 REMARK 3 T TENSOR REMARK 3 T11: 0.5291 T22: 0.6651 REMARK 3 T33: 0.4938 T12: 0.1559 REMARK 3 T13: 0.1167 T23: -0.2271 REMARK 3 L TENSOR REMARK 3 L11: 3.1617 L22: 7.3701 REMARK 3 L33: 7.6407 L12: 0.3092 REMARK 3 L13: -0.4639 L23: -4.3589 REMARK 3 S TENSOR REMARK 3 S11: -0.1540 S12: -0.6504 S13: 0.2372 REMARK 3 S21: 1.2081 S22: -0.0636 S23: 0.2957 REMARK 3 S31: -0.1120 S32: 0.4685 S33: 0.2449 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3536 19.4194 16.7155 REMARK 3 T TENSOR REMARK 3 T11: 0.4736 T22: 0.5878 REMARK 3 T33: 0.6037 T12: 0.1931 REMARK 3 T13: -0.1326 T23: -0.3041 REMARK 3 L TENSOR REMARK 3 L11: 0.8945 L22: 1.6192 REMARK 3 L33: 3.2458 L12: 1.1596 REMARK 3 L13: -0.2543 L23: -1.0690 REMARK 3 S TENSOR REMARK 3 S11: -0.1982 S12: 0.1883 S13: 0.4633 REMARK 3 S21: -0.0241 S22: -0.1226 S23: -0.1312 REMARK 3 S31: -0.5540 S32: -0.4816 S33: 0.1942 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.58650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.92300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.58650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 65.92300 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.58650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 65.92300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.58650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 65.92300 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.58650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.92300 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.58650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 65.92300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.58650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.92300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.58650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.58650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.92300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -444.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 162 O HOH A 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -168.20 -110.30 REMARK 500 LYS A 139 -45.48 62.09 REMARK 500 SER A 140 89.57 -58.65 REMARK 500 LYS A 158 18.19 58.78 REMARK 500 ALA A 159 25.49 49.96 REMARK 500 THR A 162 -63.51 61.20 REMARK 500 GLN A 193 44.09 -77.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 97.3 REMARK 620 3 GLU A 119 OE2 170.1 89.2 REMARK 620 4 ILE A 120 O 80.7 91.2 91.8 REMARK 620 5 WTD A 203 O13 101.1 99.3 85.0 168.9 REMARK 620 6 WTD A 203 O15 81.9 177.1 91.2 86.0 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 83.0 REMARK 620 3 WTD A 203 O10 108.3 167.2 REMARK 620 4 WTD A 203 O13 117.5 88.7 80.7 REMARK 620 5 HOH A 302 O 162.9 87.4 83.0 76.3 REMARK 620 6 HOH A 303 O 81.1 89.0 98.6 160.9 84.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7K87 RELATED DB: PDB DBREF1 7KNR A 1 50 UNP A0A4D6EED0_9INFA DBREF2 7KNR A A0A4D6EED0 1 50 DBREF 7KNR A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7KNR MET A -19 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR GLY A -18 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR SER A -17 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR SER A -16 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -15 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -14 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -13 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -12 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -11 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A -10 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR SER A -9 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR SER A -8 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR GLY A -7 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR LEU A -6 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR VAL A -5 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR PRO A -4 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR ARG A -3 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR GLY A -2 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR SER A -1 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR HIS A 0 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNR GLY A 51 UNP A0A4D6EED LINKER SEQADV 7KNR GLY A 52 UNP A0A4D6EED LINKER SEQADV 7KNR SER A 53 UNP A0A4D6EED LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET WTD A 203 30 HET QQ4 A 204 41 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HETNAM MN MANGANESE (II) ION HETNAM WTD 2-(2,6-DIFLUOROPHENYL)-5-HYDROXY-N-[2-(4-HYDROXY-3- HETNAM 2 WTD METHOXYPHENYL)ETHYL]-6-OXO-3,6-DIHYDROPYRIMIDINE-4- HETNAM 3 WTD CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 WTD C20 H17 F2 N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *31(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.18 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.40 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.10 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.25 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.16 LINK O ILE A 120 MN MN A 201 1555 1555 2.10 LINK MN MN A 201 O13 WTD A 203 1555 1555 2.25 LINK MN MN A 201 O15 WTD A 203 1555 1555 1.93 LINK MN MN A 202 O10 WTD A 203 1555 1555 2.63 LINK MN MN A 202 O13 WTD A 203 1555 1555 1.93 LINK MN MN A 202 O HOH A 302 1555 1555 2.33 LINK MN MN A 202 O HOH A 303 1555 1555 2.62 CRYST1 89.173 89.173 131.846 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011214 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007585 0.00000