HEADER VIRAL PROTEIN, HYDROLASE 06-NOV-20 7KNY TITLE THE CRYSTAL STRUCTURE OF THE I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988528 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,S.W.WHITE REVDAT 3 18-OCT-23 7KNY 1 REMARK REVDAT 2 11-OCT-23 7KNY 1 JRNL REVDAT 1 10-NOV-21 7KNY 0 JRNL AUTH M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF THE I38T MUTANT PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988528 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 9605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8400 - 3.5800 0.95 3112 153 0.1810 0.2301 REMARK 3 2 3.5800 - 2.8400 0.97 2988 192 0.2513 0.3054 REMARK 3 3 2.8400 - 2.4800 0.98 3023 137 0.2991 0.3819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.459 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.834 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1551 REMARK 3 ANGLE : 0.620 2094 REMARK 3 CHIRALITY : 0.041 218 REMARK 3 PLANARITY : 0.004 262 REMARK 3 DIHEDRAL : 8.235 222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1003 20.7488 7.6542 REMARK 3 T TENSOR REMARK 3 T11: 0.6335 T22: 0.4406 REMARK 3 T33: 0.5851 T12: -0.0299 REMARK 3 T13: 0.2338 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.1770 L22: 0.0941 REMARK 3 L33: 0.1031 L12: -0.1094 REMARK 3 L13: 0.0717 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: 0.3499 S13: -0.1300 REMARK 3 S21: -0.0005 S22: -0.1614 S23: -0.0793 REMARK 3 S31: 0.3989 S32: 0.4102 S33: 0.0014 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4988 21.1865 22.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.6803 T22: 0.5660 REMARK 3 T33: 0.6094 T12: -0.0048 REMARK 3 T13: 0.1771 T23: 0.1969 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 0.1291 REMARK 3 L33: 0.1523 L12: -0.0355 REMARK 3 L13: 0.1284 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.4953 S13: -0.0926 REMARK 3 S21: 0.2209 S22: -0.1463 S23: -0.0542 REMARK 3 S31: 0.5356 S32: 0.0825 S33: -0.0144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8757 13.4558 27.6697 REMARK 3 T TENSOR REMARK 3 T11: 1.0667 T22: 0.4910 REMARK 3 T33: 0.4224 T12: -0.3073 REMARK 3 T13: 0.4427 T23: 0.1778 REMARK 3 L TENSOR REMARK 3 L11: 0.0828 L22: 0.2949 REMARK 3 L33: 0.1395 L12: -0.1196 REMARK 3 L13: 0.0982 L23: -0.1486 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.0691 S13: -0.0137 REMARK 3 S21: 0.0118 S22: 0.1149 S23: 0.2560 REMARK 3 S31: 0.0772 S32: -0.1191 S33: 0.2309 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8343 23.2210 20.9374 REMARK 3 T TENSOR REMARK 3 T11: 0.6233 T22: 0.5143 REMARK 3 T33: 0.6837 T12: -0.2345 REMARK 3 T13: 0.2886 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.6975 L22: 0.4145 REMARK 3 L33: 0.1205 L12: -0.2581 REMARK 3 L13: 0.1508 L23: 0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.2258 S12: -0.2657 S13: -0.2393 REMARK 3 S21: 0.3134 S22: -0.0793 S23: 0.3183 REMARK 3 S31: 0.5493 S32: -0.3963 S33: -0.3416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 45.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.10500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.77050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.45700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.77050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.45700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.77050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.45700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.77050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.45700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.77050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.45700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.77050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.45700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.77050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.45700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.77050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.77050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ARG A 125 CZ NH1 NH2 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -60.22 -93.02 REMARK 500 ASN A 96 8.29 -63.14 REMARK 500 ARG A 125 -166.09 -110.64 REMARK 500 LYS A 139 -45.25 58.29 REMARK 500 THR A 162 -55.04 65.20 REMARK 500 SER A 194 -26.75 -154.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.7 REMARK 620 3 GLU A 119 OE2 171.9 91.2 REMARK 620 4 ILE A 120 O 90.7 93.9 87.0 REMARK 620 5 WTG A 203 O13 101.4 102.9 78.5 157.9 REMARK 620 6 WTG A 203 O15 79.6 174.6 92.5 82.4 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 88.3 REMARK 620 3 WTG A 203 O10 79.2 161.3 REMARK 620 4 WTG A 203 O13 134.9 90.6 88.6 REMARK 620 5 HOH A 302 O 149.7 87.7 110.2 75.2 REMARK 620 6 HOH A 305 O 73.5 90.3 99.3 151.6 76.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7K87 RELATED DB: PDB DBREF1 7KNY A 1 50 UNP A0A4D6EED0_9INFA DBREF2 7KNY A A0A4D6EED0 1 50 DBREF 7KNY A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7KNY MET A -19 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY GLY A -18 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY SER A -17 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY SER A -16 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -15 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -14 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -13 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -12 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -11 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A -10 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY SER A -9 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY SER A -8 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY GLY A -7 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY LEU A -6 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY VAL A -5 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY PRO A -4 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY ARG A -3 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY GLY A -2 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY SER A -1 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY HIS A 0 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KNY GLY A 51 UNP A0A4D6EED LINKER SEQADV 7KNY GLY A 52 UNP A0A4D6EED LINKER SEQADV 7KNY SER A 53 UNP A0A4D6EED LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET WTG A 203 29 HET QQ4 A 204 41 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM WTG 2-(2-FLUOROPHENYL)-5-HYDROXY-N-[2-(4-HYDROXY-3- HETNAM 2 WTG METHOXYPHENYL)ETHYL]-6-OXO-3,6-DIHYDROPYRIMIDINE-4- HETNAM 3 WTG CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 WTG C20 H18 F N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *23(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.22 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.48 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.09 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.13 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.19 LINK O ILE A 120 MN MN A 201 1555 1555 2.08 LINK MN MN A 201 O13 WTG A 203 1555 1555 2.17 LINK MN MN A 201 O15 WTG A 203 1555 1555 2.13 LINK MN MN A 202 O10 WTG A 203 1555 1555 1.86 LINK MN MN A 202 O13 WTG A 203 1555 1555 2.22 LINK MN MN A 202 O HOH A 302 1555 1555 2.43 LINK MN MN A 202 O HOH A 305 1555 1555 2.24 CRYST1 89.541 89.541 132.914 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007524 0.00000