HEADER IMMUNE SYSTEM 10-NOV-20 7KP0 TITLE CD1A-42:1 SM BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T-CELL SURFACE ANTIGEN T6/LEU-6,HTA1 THYMOCYTE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CD1, ANTIGEN PRESENTATION, LIPID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.WEGRECKI,J.LE NOURS,J.ROSSJOHN REVDAT 3 18-OCT-23 7KP0 1 REMARK REVDAT 2 16-JUN-21 7KP0 1 JRNL REVDAT 1 05-MAY-21 7KP0 0 JRNL AUTH R.N.COTTON,M.WEGRECKI,T.Y.CHENG,Y.L.CHEN,N.VEERAPEN, JRNL AUTH 2 J.LE NOURS,D.P.ORGILL,B.POMAHAC,S.G.TALBOT,R.WILLIS, JRNL AUTH 3 J.D.ALTMAN,A.DE JONG,I.VAN RHIJN,R.A.CLARK,G.S.BESRA,G.OGG, JRNL AUTH 4 J.ROSSJOHN,D.B.MOODY JRNL TITL CD1A SELECTIVELY CAPTURES ENDOGENOUS CELLULAR LIPIDS THAT JRNL TITL 2 BROADLY BLOCK T CELL RESPONSE. JRNL REF J.EXP.MED. V. 218 2021 JRNL REFN ESSN 1540-9538 JRNL PMID 33961028 JRNL DOI 10.1084/JEM.20202699 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8600 - 4.3600 1.00 2821 156 0.1650 0.2247 REMARK 3 2 4.3600 - 3.4600 1.00 2688 145 0.1647 0.2753 REMARK 3 3 3.4600 - 3.0200 1.00 2634 152 0.2014 0.2628 REMARK 3 4 3.0200 - 2.7500 1.00 2632 142 0.2286 0.2770 REMARK 3 5 2.7500 - 2.5500 1.00 2623 141 0.2369 0.3099 REMARK 3 6 2.5500 - 2.4000 0.99 2575 157 0.2631 0.3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3226 REMARK 3 ANGLE : 0.983 4373 REMARK 3 CHIRALITY : 0.057 447 REMARK 3 PLANARITY : 0.005 558 REMARK 3 DIHEDRAL : 18.895 1168 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0705 32.1467 36.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.5136 REMARK 3 T33: 0.5744 T12: -0.1488 REMARK 3 T13: -0.0052 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 6.6209 L22: 3.9934 REMARK 3 L33: 7.3920 L12: -1.7773 REMARK 3 L13: 0.4008 L23: -1.9968 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0442 S13: -0.7178 REMARK 3 S21: -0.4620 S22: 0.1470 S23: -0.1717 REMARK 3 S31: 0.7391 S32: -1.1831 S33: -0.3110 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3747 22.8379 31.7435 REMARK 3 T TENSOR REMARK 3 T11: 1.3950 T22: 0.8627 REMARK 3 T33: 1.4658 T12: -0.2743 REMARK 3 T13: 0.2559 T23: -0.3872 REMARK 3 L TENSOR REMARK 3 L11: 6.2872 L22: 3.0037 REMARK 3 L33: 2.3296 L12: -2.5201 REMARK 3 L13: 2.0563 L23: -2.6666 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: 0.7510 S13: -1.6104 REMARK 3 S21: -0.3867 S22: -0.4959 S23: 0.6023 REMARK 3 S31: 0.8530 S32: -0.0614 S33: 0.1670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6532 32.4068 36.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.3869 REMARK 3 T33: 0.5555 T12: -0.0193 REMARK 3 T13: 0.1064 T23: -0.1325 REMARK 3 L TENSOR REMARK 3 L11: 6.9154 L22: 3.4282 REMARK 3 L33: 4.5137 L12: 0.3460 REMARK 3 L13: -1.2332 L23: 0.6742 REMARK 3 S TENSOR REMARK 3 S11: -0.2803 S12: 0.4620 S13: -0.5597 REMARK 3 S21: -0.2195 S22: 0.0306 S23: -0.5580 REMARK 3 S31: 0.3841 S32: 0.7942 S33: 0.1366 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6491 60.0786 47.4696 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.2650 REMARK 3 T33: 0.3398 T12: -0.0070 REMARK 3 T13: 0.0264 T23: 0.0720 REMARK 3 L TENSOR REMARK 3 L11: 2.8171 L22: 2.1721 REMARK 3 L33: 2.5772 L12: -0.5633 REMARK 3 L13: 0.2317 L23: 0.0696 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.2420 S13: 0.3712 REMARK 3 S21: -0.0119 S22: 0.0256 S23: 0.0041 REMARK 3 S31: 0.1148 S32: -0.0016 S33: -0.0107 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8813 45.9575 54.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.1576 REMARK 3 T33: 0.2492 T12: -0.0103 REMARK 3 T13: -0.0312 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.2156 L22: 3.6838 REMARK 3 L33: 3.1876 L12: -2.0287 REMARK 3 L13: -0.8196 L23: 0.5760 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: 0.1144 S13: -0.0186 REMARK 3 S21: -0.0768 S22: 0.0381 S23: 0.0134 REMARK 3 S31: 0.0948 S32: 0.0476 S33: -0.0776 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7533 35.3168 58.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.4292 T22: 0.3406 REMARK 3 T33: 0.3650 T12: 0.0260 REMARK 3 T13: -0.0066 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 3.3551 L22: 4.6160 REMARK 3 L33: 6.3322 L12: -0.8597 REMARK 3 L13: -4.3306 L23: 2.3075 REMARK 3 S TENSOR REMARK 3 S11: -0.3465 S12: -0.6194 S13: -0.7771 REMARK 3 S21: 0.4112 S22: 0.0523 S23: 0.1612 REMARK 3 S31: 0.6601 S32: -0.1721 S33: 0.3647 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9678 40.2049 48.5792 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.1928 REMARK 3 T33: 0.3648 T12: -0.0005 REMARK 3 T13: -0.0196 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 4.7029 L22: 3.9183 REMARK 3 L33: 2.8775 L12: -4.1106 REMARK 3 L13: -2.8327 L23: 2.9385 REMARK 3 S TENSOR REMARK 3 S11: -0.3628 S12: 0.6599 S13: -0.2831 REMARK 3 S21: 0.1054 S22: 0.2341 S23: 0.0031 REMARK 3 S31: 0.2426 S32: -0.1774 S33: 0.0358 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6775 41.8851 64.4802 REMARK 3 T TENSOR REMARK 3 T11: 0.4118 T22: 0.4492 REMARK 3 T33: 0.3648 T12: 0.0551 REMARK 3 T13: -0.0426 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.1725 L22: 5.9175 REMARK 3 L33: 4.4781 L12: -3.5106 REMARK 3 L13: 0.1830 L23: 0.7421 REMARK 3 S TENSOR REMARK 3 S11: -0.8812 S12: -1.4896 S13: -0.0316 REMARK 3 S21: 0.7544 S22: 0.7704 S23: 0.0222 REMARK 3 S31: 0.0367 S32: 0.1568 S33: 0.0532 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4658 56.0374 65.9572 REMARK 3 T TENSOR REMARK 3 T11: 1.0228 T22: 0.8186 REMARK 3 T33: 0.8406 T12: 0.0027 REMARK 3 T13: 0.2237 T23: -0.1960 REMARK 3 L TENSOR REMARK 3 L11: 5.3473 L22: 2.1462 REMARK 3 L33: 4.0963 L12: -3.3646 REMARK 3 L13: -4.1936 L23: 2.8186 REMARK 3 S TENSOR REMARK 3 S11: 0.2689 S12: -1.3653 S13: 0.9070 REMARK 3 S21: 2.1214 S22: 0.3958 S23: -0.0242 REMARK 3 S31: -0.8376 S32: -0.7551 S33: -0.6895 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NUX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 1500, 0.1M MMT PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.23450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.67550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.45900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.67550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.23450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.45900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 LYS A 108 REMARK 465 VAL A 109 REMARK 465 ALA B 1 REMARK 465 ARG B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 103 CG CD1 CD2 REMARK 470 VAL B 104 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 229 O HOH B 247 1.96 REMARK 500 O HOH A 459 O HOH B 228 2.03 REMARK 500 O ASP A 258 O HOH A 401 2.03 REMARK 500 OD1 ASN A 128 O HOH A 402 2.06 REMARK 500 O PRO A 135 O HOH A 403 2.07 REMARK 500 O HOH A 466 O HOH A 467 2.12 REMARK 500 O ARG A 82 O HOH A 404 2.15 REMARK 500 O HOH A 455 O HOH A 462 2.16 REMARK 500 O HOH A 423 O HOH A 429 2.18 REMARK 500 O HOH A 414 O HOH A 451 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 108.25 68.49 REMARK 500 SER A 22 49.19 -152.23 REMARK 500 SER A 33 -108.26 51.05 REMARK 500 SER A 44 -8.92 71.91 REMARK 500 PHE A 123 -67.72 -124.37 REMARK 500 ASN A 128 -67.93 56.73 REMARK 500 LEU A 171 -73.72 -56.60 REMARK 500 PRO A 213 -167.20 -75.83 REMARK 500 GLU A 255 20.93 -78.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 466 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 7.09 ANGSTROMS DBREF 7KP0 A 1 278 UNP P06126 CD1A_HUMAN 18 295 DBREF 7KP0 B 1 100 UNP P61769 B2MG_HUMAN 20 119 SEQADV 7KP0 THR A 2 UNP P06126 ASP 19 CONFLICT SEQADV 7KP0 ILE A 13 UNP P06126 THR 30 CONFLICT SEQADV 7KP0 TRP A 51 UNP P06126 CYS 68 CONFLICT SEQADV 7KP0 GLY A 279 UNP P06126 EXPRESSION TAG SEQADV 7KP0 SER A 280 UNP P06126 EXPRESSION TAG SEQADV 7KP0 LEU A 281 UNP P06126 EXPRESSION TAG SEQADV 7KP0 VAL A 282 UNP P06126 EXPRESSION TAG SEQADV 7KP0 PRO A 283 UNP P06126 EXPRESSION TAG SEQADV 7KP0 ARG A 284 UNP P06126 EXPRESSION TAG SEQADV 7KP0 GLY A 285 UNP P06126 EXPRESSION TAG SEQADV 7KP0 GLY B 101 UNP P61769 EXPRESSION TAG SEQADV 7KP0 SER B 102 UNP P61769 EXPRESSION TAG SEQADV 7KP0 LEU B 103 UNP P61769 EXPRESSION TAG SEQADV 7KP0 VAL B 104 UNP P61769 EXPRESSION TAG SEQADV 7KP0 PRO B 105 UNP P61769 EXPRESSION TAG SEQADV 7KP0 ARG B 106 UNP P61769 EXPRESSION TAG SEQRES 1 A 285 ALA THR GLY LEU LYS GLU PRO LEU SER PHE HIS VAL ILE SEQRES 2 A 285 TRP ILE ALA SER PHE TYR ASN HIS SER TRP LYS GLN ASN SEQRES 3 A 285 LEU VAL SER GLY TRP LEU SER ASP LEU GLN THR HIS THR SEQRES 4 A 285 TRP ASP SER ASN SER SER THR ILE VAL PHE LEU TRP PRO SEQRES 5 A 285 TRP SER ARG GLY ASN PHE SER ASN GLU GLU TRP LYS GLU SEQRES 6 A 285 LEU GLU THR LEU PHE ARG ILE ARG THR ILE ARG SER PHE SEQRES 7 A 285 GLU GLY ILE ARG ARG TYR ALA HIS GLU LEU GLN PHE GLU SEQRES 8 A 285 TYR PRO PHE GLU ILE GLN VAL THR GLY GLY CYS GLU LEU SEQRES 9 A 285 HIS SER GLY LYS VAL SER GLY SER PHE LEU GLN LEU ALA SEQRES 10 A 285 TYR GLN GLY SER ASP PHE VAL SER PHE GLN ASN ASN SER SEQRES 11 A 285 TRP LEU PRO TYR PRO VAL ALA GLY ASN MET ALA LYS HIS SEQRES 12 A 285 PHE CYS LYS VAL LEU ASN GLN ASN GLN HIS GLU ASN ASP SEQRES 13 A 285 ILE THR HIS ASN LEU LEU SER ASP THR CYS PRO ARG PHE SEQRES 14 A 285 ILE LEU GLY LEU LEU ASP ALA GLY LYS ALA HIS LEU GLN SEQRES 15 A 285 ARG GLN VAL LYS PRO GLU ALA TRP LEU SER HIS GLY PRO SEQRES 16 A 285 SER PRO GLY PRO GLY HIS LEU GLN LEU VAL CYS HIS VAL SEQRES 17 A 285 SER GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET SEQRES 18 A 285 ARG GLY GLU GLN GLU GLN GLN GLY THR GLN ARG GLY ASP SEQRES 19 A 285 ILE LEU PRO SER ALA ASP GLY THR TRP TYR LEU ARG ALA SEQRES 20 A 285 THR LEU GLU VAL ALA ALA GLY GLU ALA ALA ASP LEU SER SEQRES 21 A 285 CYS ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE SEQRES 22 A 285 VAL LEU TYR TRP GLU GLY SER LEU VAL PRO ARG GLY SEQRES 1 B 106 ALA ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 106 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 106 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 106 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 106 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 106 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 106 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 106 LYS ILE VAL LYS TRP ASP ARG ASP MET GLY SER LEU VAL SEQRES 9 B 106 PRO ARG HET WUA A 301 56 HET EDO A 302 4 HET EDO A 303 4 HETNAM WUA (4R,7S)-4-HYDROXY-7-[(1S,2E)-1-HYDROXYHEXADEC-2-EN-1- HETNAM 2 WUA YL]-N,N,N-TRIMETHYL-4,9-DIOXO-3,5-DIOXA-8-AZA- HETNAM 3 WUA 4LAMBDA~5~-PHOSPHADOTRIACONTAN-1-AMINIUM HETNAM EDO 1,2-ETHANEDIOL HETSYN WUA N-LIGNOCEROYLSPHINGOSINE-1-PHOSPHOCHOLINE; C24 HETSYN 2 WUA SPHINGOMYELIN HETSYN EDO ETHYLENE GLYCOL FORMUL 3 WUA C47 H96 N2 O6 P 1+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *116(H2 O) HELIX 1 AA1 TRP A 51 GLY A 56 5 6 HELIX 2 AA2 SER A 59 TYR A 84 1 26 HELIX 3 AA3 PRO A 135 ALA A 137 5 3 HELIX 4 AA4 GLY A 138 ASN A 149 1 12 HELIX 5 AA5 ASN A 151 ASP A 164 1 14 HELIX 6 AA6 ASP A 164 ASP A 175 1 12 HELIX 7 AA7 GLY A 177 GLN A 182 1 6 HELIX 8 AA8 HIS A 265 GLU A 269 5 5 HELIX 9 AA9 GLU A 278 VAL A 282 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N THR A 39 O VAL A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 PHE A 10 ASN A 20 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 GLU A 103 -1 O PHE A 94 N PHE A 18 SHEET 6 AA1 8 GLY A 111 TYR A 118 -1 O GLY A 111 N GLU A 103 SHEET 7 AA1 8 SER A 121 GLN A 127 -1 O VAL A 124 N LEU A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O LEU A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 HIS A 193 0 SHEET 2 AA2 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 TRP A 243 ALA A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA2 4 GLN A 231 ARG A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 HIS A 193 0 SHEET 2 AA3 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 TRP A 243 ALA A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA3 4 LEU A 236 PRO A 237 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O LYS A 264 N TRP A 217 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 28 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 28 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ARG B 82 N ASP B 39 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.04 SSBOND 2 CYS A 206 CYS A 261 1555 1555 2.01 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.04 CISPEP 1 TYR A 92 PRO A 93 0 -3.18 CISPEP 2 TYR A 212 PRO A 213 0 1.34 CISPEP 3 VAL A 282 PRO A 283 0 -7.30 CISPEP 4 HIS B 32 PRO B 33 0 3.66 CRYST1 42.469 90.918 107.351 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009315 0.00000