HEADER IMMUNE SYSTEM 10-NOV-20 7KP1 TITLE CD1A-42:2 SM BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T-CELL SURFACE ANTIGEN T6/LEU-6,HTA1 THYMOCYTE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CD1, ANTIGEN PRESENTATION, LIPID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.WEGRECKI,J.LE NOURS,J.ROSSJOHN REVDAT 3 18-OCT-23 7KP1 1 REMARK REVDAT 2 16-JUN-21 7KP1 1 JRNL REVDAT 1 05-MAY-21 7KP1 0 JRNL AUTH R.N.COTTON,M.WEGRECKI,T.Y.CHENG,Y.L.CHEN,N.VEERAPEN, JRNL AUTH 2 J.LE NOURS,D.P.ORGILL,B.POMAHAC,S.G.TALBOT,R.WILLIS, JRNL AUTH 3 J.D.ALTMAN,A.DE JONG,I.VAN RHIJN,R.A.CLARK,G.S.BESRA,G.OGG, JRNL AUTH 4 J.ROSSJOHN,D.B.MOODY JRNL TITL CD1A SELECTIVELY CAPTURES ENDOGENOUS CELLULAR LIPIDS THAT JRNL TITL 2 BROADLY BLOCK T CELL RESPONSE. JRNL REF J.EXP.MED. V. 218 2021 JRNL REFN ESSN 1540-9538 JRNL PMID 33961028 JRNL DOI 10.1084/JEM.20202699 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0700 - 4.2000 1.00 3080 141 0.1635 0.1999 REMARK 3 2 4.2000 - 3.3300 1.00 2927 146 0.1601 0.1854 REMARK 3 3 3.3300 - 2.9100 1.00 2902 137 0.1868 0.2558 REMARK 3 4 2.9100 - 2.6500 1.00 2838 157 0.2079 0.2509 REMARK 3 5 2.6500 - 2.4600 1.00 2856 156 0.2054 0.2480 REMARK 3 6 2.4600 - 2.3100 1.00 2843 145 0.2145 0.2538 REMARK 3 7 2.3100 - 2.2000 1.00 2852 125 0.2175 0.2526 REMARK 3 8 2.2000 - 2.1000 1.00 2841 136 0.2298 0.2469 REMARK 3 9 2.1000 - 2.0200 1.00 2798 158 0.2590 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3207 REMARK 3 ANGLE : 0.829 4355 REMARK 3 CHIRALITY : 0.051 446 REMARK 3 PLANARITY : 0.004 556 REMARK 3 DIHEDRAL : 21.360 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9237 30.9379 34.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.2876 REMARK 3 T33: 0.3443 T12: -0.0510 REMARK 3 T13: 0.0239 T23: -0.1204 REMARK 3 L TENSOR REMARK 3 L11: 5.6197 L22: 1.9083 REMARK 3 L33: 4.0783 L12: -0.5736 REMARK 3 L13: -0.6753 L23: -0.2082 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.6826 S13: -0.6769 REMARK 3 S21: -0.3045 S22: -0.0429 S23: 0.1585 REMARK 3 S31: 0.1798 S32: -0.2879 S33: -0.0314 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6780 62.4828 50.7438 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1610 REMARK 3 T33: 0.2318 T12: 0.0113 REMARK 3 T13: 0.0093 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.7376 L22: 3.1990 REMARK 3 L33: 3.2999 L12: 0.1945 REMARK 3 L13: 0.9135 L23: 1.1084 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.0136 S13: 0.2651 REMARK 3 S21: 0.0234 S22: 0.1114 S23: 0.0163 REMARK 3 S31: 0.0162 S32: -0.0910 S33: -0.1687 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3482 43.8765 55.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.3808 REMARK 3 T33: 0.2875 T12: 0.0164 REMARK 3 T13: -0.0241 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 2.8112 L22: 4.9349 REMARK 3 L33: 2.4427 L12: -3.6683 REMARK 3 L13: 0.2968 L23: 0.1169 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: -0.7722 S13: 0.2490 REMARK 3 S21: -0.1048 S22: 0.4114 S23: -0.5130 REMARK 3 S31: -0.0649 S32: 0.5743 S33: -0.1782 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2729 50.8765 54.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.3122 REMARK 3 T33: 0.4296 T12: 0.0250 REMARK 3 T13: -0.0485 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 1.7281 L22: 6.8793 REMARK 3 L33: 8.2580 L12: 3.2173 REMARK 3 L13: -2.8115 L23: -3.5034 REMARK 3 S TENSOR REMARK 3 S11: -0.3299 S12: 0.1333 S13: 0.4006 REMARK 3 S21: 0.2969 S22: 0.5384 S23: 0.6953 REMARK 3 S31: -0.0562 S32: -0.6799 S33: -0.1578 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2059 39.3626 55.1833 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.1795 REMARK 3 T33: 0.2520 T12: 0.0029 REMARK 3 T13: -0.0292 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 3.0248 L22: 0.8183 REMARK 3 L33: 2.1720 L12: -1.1987 REMARK 3 L13: -2.5935 L23: 0.9899 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.2987 S13: -0.3562 REMARK 3 S21: 0.0110 S22: 0.0888 S23: 0.1664 REMARK 3 S31: 0.1997 S32: 0.1065 S33: 0.1098 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6613 35.9943 64.3829 REMARK 3 T TENSOR REMARK 3 T11: 0.4557 T22: 0.4620 REMARK 3 T33: 0.3861 T12: 0.0233 REMARK 3 T13: 0.0669 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 2.3870 L22: 4.0313 REMARK 3 L33: 4.3922 L12: 1.7194 REMARK 3 L13: 2.5584 L23: 3.9950 REMARK 3 S TENSOR REMARK 3 S11: -0.3609 S12: -1.2256 S13: -1.2235 REMARK 3 S21: 0.8840 S22: -0.0486 S23: 0.0159 REMARK 3 S31: 1.3398 S32: -0.6892 S33: 0.4233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0547 33.3696 52.9306 REMARK 3 T TENSOR REMARK 3 T11: 0.4491 T22: 0.2932 REMARK 3 T33: 0.5207 T12: -0.0422 REMARK 3 T13: -0.1022 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 5.1807 L22: 3.6015 REMARK 3 L33: 5.0639 L12: 4.1711 REMARK 3 L13: -4.6088 L23: -4.1355 REMARK 3 S TENSOR REMARK 3 S11: -0.2903 S12: -0.0698 S13: -0.9470 REMARK 3 S21: -0.4654 S22: 0.6944 S23: 0.2889 REMARK 3 S31: 0.8315 S32: -0.7427 S33: -0.2826 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4893 39.6337 48.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.1568 REMARK 3 T33: 0.2424 T12: 0.0070 REMARK 3 T13: -0.0117 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.5496 L22: 1.4540 REMARK 3 L33: 2.3245 L12: -0.9888 REMARK 3 L13: -3.0448 L23: 0.4972 REMARK 3 S TENSOR REMARK 3 S11: -0.1739 S12: 0.1696 S13: -0.3561 REMARK 3 S21: -0.1465 S22: 0.0461 S23: 0.1790 REMARK 3 S31: 0.0833 S32: -0.1003 S33: 0.1240 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2006 46.2694 65.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.5156 REMARK 3 T33: 0.4830 T12: 0.0455 REMARK 3 T13: 0.0437 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.6360 L22: 7.5037 REMARK 3 L33: 4.2845 L12: -2.5122 REMARK 3 L13: -3.9189 L23: 2.1339 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: -1.3919 S13: 0.0697 REMARK 3 S21: 0.2649 S22: 0.1265 S23: -0.0314 REMARK 3 S31: -0.8512 S32: -1.1174 S33: 0.1341 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6067 39.3575 63.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.5729 REMARK 3 T33: 0.2913 T12: 0.1030 REMARK 3 T13: -0.0300 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 3.9646 L22: 1.9464 REMARK 3 L33: 1.1552 L12: -2.4217 REMARK 3 L13: 1.4492 L23: -1.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.4250 S12: -2.2004 S13: -0.1116 REMARK 3 S21: 0.3982 S22: 0.6358 S23: 0.0317 REMARK 3 S31: 0.0202 S32: 0.3393 S33: -0.1297 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4934 55.9797 65.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.8031 T22: 0.5831 REMARK 3 T33: 0.4964 T12: 0.0932 REMARK 3 T13: 0.0947 T23: -0.1420 REMARK 3 L TENSOR REMARK 3 L11: 0.0956 L22: 5.3470 REMARK 3 L33: 4.1306 L12: -0.4466 REMARK 3 L13: -0.3624 L23: 4.6738 REMARK 3 S TENSOR REMARK 3 S11: 0.4661 S12: -1.0772 S13: 0.4190 REMARK 3 S21: 0.6629 S22: -0.1081 S23: 0.1209 REMARK 3 S31: -1.4218 S32: -0.6538 S33: -0.3908 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 45.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NUX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 1500, 0.1M MMT PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.07400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.98050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.06950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.98050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.07400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.06950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 LYS A 108 REMARK 465 VAL A 109 REMARK 465 ALA B 1 REMARK 465 ARG B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LEU A 66 CG CD1 CD2 REMARK 470 HIS A 105 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 82 O HOH B 201 1.92 REMARK 500 O HOH A 451 O HOH A 537 1.96 REMARK 500 NH2 ARG A 222 O HOH A 401 1.98 REMARK 500 O HOH A 514 O HOH A 520 2.14 REMARK 500 O ILE B 2 O HOH B 202 2.18 REMARK 500 OG SER A 238 O HOH A 402 2.18 REMARK 500 O HOH A 507 O HOH A 526 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -127.20 57.67 REMARK 500 SER A 33 -107.46 51.42 REMARK 500 LEU A 114 113.27 -161.48 REMARK 500 PHE A 123 -65.20 -126.49 REMARK 500 ASN A 128 -78.75 56.84 REMARK 500 ASP A 164 -63.46 -121.10 REMARK 500 SER A 196 72.39 -119.35 REMARK 500 TRP B 61 -2.40 77.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 7KP1 A 1 278 UNP P06126 CD1A_HUMAN 18 295 DBREF 7KP1 B 1 100 UNP P61769 B2MG_HUMAN 20 119 SEQADV 7KP1 THR A 2 UNP P06126 ASP 19 CONFLICT SEQADV 7KP1 ILE A 13 UNP P06126 THR 30 CONFLICT SEQADV 7KP1 TRP A 51 UNP P06126 CYS 68 CONFLICT SEQADV 7KP1 GLY A 279 UNP P06126 EXPRESSION TAG SEQADV 7KP1 SER A 280 UNP P06126 EXPRESSION TAG SEQADV 7KP1 LEU A 281 UNP P06126 EXPRESSION TAG SEQADV 7KP1 VAL A 282 UNP P06126 EXPRESSION TAG SEQADV 7KP1 PRO A 283 UNP P06126 EXPRESSION TAG SEQADV 7KP1 ARG A 284 UNP P06126 EXPRESSION TAG SEQADV 7KP1 GLY A 285 UNP P06126 EXPRESSION TAG SEQADV 7KP1 GLY B 101 UNP P61769 EXPRESSION TAG SEQADV 7KP1 SER B 102 UNP P61769 EXPRESSION TAG SEQADV 7KP1 LEU B 103 UNP P61769 EXPRESSION TAG SEQADV 7KP1 VAL B 104 UNP P61769 EXPRESSION TAG SEQADV 7KP1 PRO B 105 UNP P61769 EXPRESSION TAG SEQADV 7KP1 ARG B 106 UNP P61769 EXPRESSION TAG SEQRES 1 A 285 ALA THR GLY LEU LYS GLU PRO LEU SER PHE HIS VAL ILE SEQRES 2 A 285 TRP ILE ALA SER PHE TYR ASN HIS SER TRP LYS GLN ASN SEQRES 3 A 285 LEU VAL SER GLY TRP LEU SER ASP LEU GLN THR HIS THR SEQRES 4 A 285 TRP ASP SER ASN SER SER THR ILE VAL PHE LEU TRP PRO SEQRES 5 A 285 TRP SER ARG GLY ASN PHE SER ASN GLU GLU TRP LYS GLU SEQRES 6 A 285 LEU GLU THR LEU PHE ARG ILE ARG THR ILE ARG SER PHE SEQRES 7 A 285 GLU GLY ILE ARG ARG TYR ALA HIS GLU LEU GLN PHE GLU SEQRES 8 A 285 TYR PRO PHE GLU ILE GLN VAL THR GLY GLY CYS GLU LEU SEQRES 9 A 285 HIS SER GLY LYS VAL SER GLY SER PHE LEU GLN LEU ALA SEQRES 10 A 285 TYR GLN GLY SER ASP PHE VAL SER PHE GLN ASN ASN SER SEQRES 11 A 285 TRP LEU PRO TYR PRO VAL ALA GLY ASN MET ALA LYS HIS SEQRES 12 A 285 PHE CYS LYS VAL LEU ASN GLN ASN GLN HIS GLU ASN ASP SEQRES 13 A 285 ILE THR HIS ASN LEU LEU SER ASP THR CYS PRO ARG PHE SEQRES 14 A 285 ILE LEU GLY LEU LEU ASP ALA GLY LYS ALA HIS LEU GLN SEQRES 15 A 285 ARG GLN VAL LYS PRO GLU ALA TRP LEU SER HIS GLY PRO SEQRES 16 A 285 SER PRO GLY PRO GLY HIS LEU GLN LEU VAL CYS HIS VAL SEQRES 17 A 285 SER GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET SEQRES 18 A 285 ARG GLY GLU GLN GLU GLN GLN GLY THR GLN ARG GLY ASP SEQRES 19 A 285 ILE LEU PRO SER ALA ASP GLY THR TRP TYR LEU ARG ALA SEQRES 20 A 285 THR LEU GLU VAL ALA ALA GLY GLU ALA ALA ASP LEU SER SEQRES 21 A 285 CYS ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE SEQRES 22 A 285 VAL LEU TYR TRP GLU GLY SER LEU VAL PRO ARG GLY SEQRES 1 B 106 ALA ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 106 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 106 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 106 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 106 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 106 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 106 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 106 LYS ILE VAL LYS TRP ASP ARG ASP MET GLY SER LEU VAL SEQRES 9 B 106 PRO ARG HET FO4 A 301 56 HET MES A 302 12 HETNAM FO4 SPHINGOMYELIN HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 FO4 C47 H94 N2 O6 P FORMUL 4 MES C6 H13 N O4 S FORMUL 5 HOH *224(H2 O) HELIX 1 AA1 TRP A 51 GLY A 56 5 6 HELIX 2 AA2 SER A 59 ALA A 85 1 27 HELIX 3 AA3 PRO A 135 ALA A 137 5 3 HELIX 4 AA4 GLY A 138 ASN A 149 1 12 HELIX 5 AA5 ASN A 151 ASP A 164 1 14 HELIX 6 AA6 ASP A 164 GLY A 172 1 9 HELIX 7 AA7 LEU A 173 GLN A 182 1 10 HELIX 8 AA8 HIS A 265 GLU A 269 5 5 HELIX 9 AA9 GLU A 278 VAL A 282 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N THR A 39 O VAL A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 PHE A 10 ASN A 20 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 GLU A 103 -1 O GLY A 100 N VAL A 12 SHEET 6 AA1 8 GLY A 111 TYR A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 SER A 121 GLN A 127 -1 O VAL A 124 N LEU A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O LEU A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 HIS A 193 0 SHEET 2 AA2 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 TRP A 243 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 ARG A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 HIS A 193 0 SHEET 2 AA3 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 TRP A 243 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 PRO A 237 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O ILE A 273 N VAL A 263 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O SER B 29 N LYS B 7 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O PHE B 71 N ASN B 22 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O SER B 29 N LYS B 7 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O PHE B 71 N ASN B 22 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ARG B 82 N ASP B 39 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O VAL B 94 N CYS B 81 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.04 SSBOND 2 CYS A 206 CYS A 261 1555 1555 2.04 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.01 CISPEP 1 TYR A 92 PRO A 93 0 -7.18 CISPEP 2 TYR A 212 PRO A 213 0 0.79 CISPEP 3 VAL A 282 PRO A 283 0 -6.78 CISPEP 4 HIS B 32 PRO B 33 0 2.91 CRYST1 42.148 90.139 105.961 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009437 0.00000