HEADER TRANSFERASE/INHIBITOR 10-NOV-20 7KP6 TITLE STRUCTURE OF ACK1 KINASE IN COMPLEX WITH A SELECTIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVATED CDC42 KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: ACK-1,TYROSINE KINASE NON-RECEPTOR PROTEIN 2; COMPND 6 EC: 2.7.10.2,2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNK2, ACK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HTB KEYWDS PROTEIN-INHIBITOR COMPLEX, TYROSINE KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.K.THAKUR,W.T.MILLER,N.MAHAJAN,M.A.SEELIGER REVDAT 4 25-OCT-23 7KP6 1 REMARK REVDAT 3 19-APR-23 7KP6 1 JRNL ATOM REVDAT 2 25-MAY-22 7KP6 1 AUTHOR JRNL REVDAT 1 09-FEB-22 7KP6 0 JRNL AUTH D.SRIDARAN,S.CHOUHAN,K.MAHAJAN,A.RENGANATHAN,C.WEIMHOLT, JRNL AUTH 2 S.BHAGWAT,M.REIMERS,E.H.KIM,M.K.THAKUR,M.A.SAEED, JRNL AUTH 3 R.K.PACHYNSKI,M.A.SEELIGER,W.T.MILLER,F.Y.FENG,N.P.MAHAJAN JRNL TITL INHIBITING ACK1-MEDIATED PHOSPHORYLATION OF C-TERMINAL SRC JRNL TITL 2 KINASE COUNTERACTS PROSTATE CANCER IMMUNE CHECKPOINT JRNL TITL 3 BLOCKADE RESISTANCE. JRNL REF NAT COMMUN V. 13 6929 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36376335 JRNL DOI 10.1038/S41467-022-34724-5 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 49519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5640 - 4.6890 0.99 2892 140 0.1753 0.2117 REMARK 3 2 4.6890 - 3.7226 0.95 2638 153 0.1383 0.1587 REMARK 3 3 3.7226 - 3.2522 0.99 2769 145 0.1673 0.1755 REMARK 3 4 3.2522 - 2.9550 0.99 2760 146 0.1797 0.1962 REMARK 3 5 2.9550 - 2.7432 1.00 2723 156 0.1861 0.2181 REMARK 3 6 2.7432 - 2.5815 1.00 2750 160 0.1807 0.2091 REMARK 3 7 2.5815 - 2.4522 0.99 2747 140 0.1802 0.2295 REMARK 3 8 2.4522 - 2.3455 1.00 2724 156 0.1798 0.1954 REMARK 3 9 2.3455 - 2.2552 1.00 2710 131 0.1784 0.2198 REMARK 3 10 2.2552 - 2.1774 1.00 2739 157 0.1773 0.1876 REMARK 3 11 2.1774 - 2.1093 1.00 2749 147 0.1846 0.2261 REMARK 3 12 2.1093 - 2.0490 1.00 2736 133 0.1906 0.2328 REMARK 3 13 2.0490 - 1.9951 1.00 2710 163 0.1943 0.2080 REMARK 3 14 1.9951 - 1.9464 1.00 2702 150 0.2043 0.2249 REMARK 3 15 1.9464 - 1.9022 0.23 628 29 0.2293 0.2905 REMARK 3 16 1.9022 - 1.8617 0.98 2657 144 0.2249 0.2837 REMARK 3 17 1.8617 - 1.8244 1.00 2746 128 0.2291 0.2658 REMARK 3 18 1.8244 - 1.7900 0.97 2624 137 0.2417 0.2503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4456 REMARK 3 ANGLE : 0.770 6034 REMARK 3 CHIRALITY : 0.048 653 REMARK 3 PLANARITY : 0.004 770 REMARK 3 DIHEDRAL : 12.178 2705 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1356 32.1432 12.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.3953 REMARK 3 T33: 0.1764 T12: 0.0144 REMARK 3 T13: 0.0202 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.5945 L22: 3.1822 REMARK 3 L33: 3.9242 L12: -1.1854 REMARK 3 L13: 1.4614 L23: -0.4794 REMARK 3 S TENSOR REMARK 3 S11: 0.2008 S12: 0.2459 S13: -0.2039 REMARK 3 S21: -0.4395 S22: -0.1308 S23: -0.0464 REMARK 3 S31: 0.3118 S32: 0.3155 S33: -0.0411 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8090 38.7545 15.7767 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.2453 REMARK 3 T33: 0.1496 T12: -0.0424 REMARK 3 T13: -0.0285 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.8522 L22: 1.3840 REMARK 3 L33: 5.7356 L12: -1.0817 REMARK 3 L13: -0.9273 L23: 0.9428 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.2458 S13: 0.0147 REMARK 3 S21: -0.5132 S22: -0.1068 S23: 0.1621 REMARK 3 S31: -0.6823 S32: 0.2021 S33: 0.0917 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8920 28.5390 30.9515 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1719 REMARK 3 T33: 0.1433 T12: 0.0561 REMARK 3 T13: 0.0238 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.0029 L22: 0.6879 REMARK 3 L33: 4.0588 L12: 0.2034 REMARK 3 L13: 0.9721 L23: -0.3602 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.1469 S13: -0.1420 REMARK 3 S21: -0.1091 S22: -0.0190 S23: -0.1598 REMARK 3 S31: 0.0900 S32: 0.2775 S33: 0.0282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2916 41.4697 34.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0766 REMARK 3 T33: 0.1042 T12: -0.0151 REMARK 3 T13: 0.0022 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.8139 L22: 6.0533 REMARK 3 L33: 8.0245 L12: -2.9667 REMARK 3 L13: 4.6204 L23: -4.4754 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.1034 S13: 0.1495 REMARK 3 S21: -0.2294 S22: -0.0639 S23: 0.0507 REMARK 3 S31: -0.1441 S32: 0.2621 S33: 0.0526 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0693 36.5004 26.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.1256 REMARK 3 T33: 0.1832 T12: 0.0088 REMARK 3 T13: -0.0542 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5426 L22: 1.9957 REMARK 3 L33: 1.1879 L12: 0.7706 REMARK 3 L13: -0.2468 L23: 0.6415 REMARK 3 S TENSOR REMARK 3 S11: -0.1870 S12: 0.1264 S13: 0.2857 REMARK 3 S21: -0.3647 S22: 0.0495 S23: 0.3209 REMARK 3 S31: -0.2082 S32: -0.0242 S33: 0.0239 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0692 31.1841 33.7413 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.0782 REMARK 3 T33: 0.1175 T12: 0.0041 REMARK 3 T13: -0.0003 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.3616 L22: 1.8747 REMARK 3 L33: 1.5151 L12: 0.0840 REMARK 3 L13: 1.2093 L23: -0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0036 S13: 0.0417 REMARK 3 S21: -0.1330 S22: -0.0457 S23: 0.1840 REMARK 3 S31: 0.0202 S32: -0.1302 S33: 0.0856 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2871 22.5784 41.1314 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1194 REMARK 3 T33: 0.1449 T12: -0.0234 REMARK 3 T13: 0.0003 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.3171 L22: 1.7434 REMARK 3 L33: 1.1924 L12: 2.3395 REMARK 3 L13: 0.8268 L23: 0.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.1917 S12: -0.3479 S13: -0.4668 REMARK 3 S21: 0.1049 S22: -0.1163 S23: 0.0853 REMARK 3 S31: 0.2581 S32: -0.1653 S33: -0.0624 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4978 34.7036 46.1713 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.1380 REMARK 3 T33: 0.1087 T12: -0.0058 REMARK 3 T13: 0.0303 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 3.4294 L22: 2.9184 REMARK 3 L33: 3.2640 L12: 0.1617 REMARK 3 L13: 0.5700 L23: -0.2026 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: -0.3957 S13: 0.1023 REMARK 3 S21: 0.1140 S22: -0.1377 S23: 0.1339 REMARK 3 S31: 0.1041 S32: -0.1415 S33: 0.0442 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0531 44.7142 43.0252 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1360 REMARK 3 T33: 0.2090 T12: -0.0353 REMARK 3 T13: 0.0065 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 4.7491 L22: 1.8171 REMARK 3 L33: 6.8901 L12: -0.2210 REMARK 3 L13: 5.6769 L23: 0.1642 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: -0.2290 S13: 0.3834 REMARK 3 S21: -0.0571 S22: -0.2469 S23: -0.1382 REMARK 3 S31: -0.0385 S32: -0.0785 S33: 0.0828 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2209 46.5801 -0.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.3215 T22: 0.3986 REMARK 3 T33: 0.1573 T12: -0.0186 REMARK 3 T13: 0.0491 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.3408 L22: 4.3230 REMARK 3 L33: 3.2622 L12: -1.3916 REMARK 3 L13: 0.5227 L23: -1.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.1496 S13: 0.0304 REMARK 3 S21: 0.2701 S22: 0.0170 S23: 0.3268 REMARK 3 S31: -0.2472 S32: -0.3822 S33: -0.0266 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9964 44.7120 -14.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.2412 REMARK 3 T33: 0.1535 T12: -0.0320 REMARK 3 T13: 0.0060 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.8561 L22: 1.3780 REMARK 3 L33: 2.5205 L12: -0.0095 REMARK 3 L13: -0.0500 L23: -0.5743 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.2365 S13: 0.0137 REMARK 3 S21: 0.1271 S22: -0.0845 S23: -0.0101 REMARK 3 S31: -0.0223 S32: 0.2351 S33: 0.0141 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5074 35.6124 -25.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1166 REMARK 3 T33: 0.1343 T12: -0.0024 REMARK 3 T13: 0.0103 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.9527 L22: 2.7780 REMARK 3 L33: 2.3384 L12: -0.1936 REMARK 3 L13: 0.2169 L23: -0.4366 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.1875 S13: -0.2085 REMARK 3 S21: -0.0212 S22: 0.0182 S23: 0.1037 REMARK 3 S31: 0.2960 S32: 0.0009 S33: -0.0047 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 325 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0931 38.8920 -33.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.1282 REMARK 3 T33: 0.1187 T12: 0.0147 REMARK 3 T13: 0.0179 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.8105 L22: 2.2874 REMARK 3 L33: 1.5472 L12: 0.3996 REMARK 3 L13: -0.1895 L23: -0.4417 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: 0.0873 S13: -0.1407 REMARK 3 S21: -0.2525 S22: 0.0054 S23: -0.0439 REMARK 3 S31: 0.0827 S32: 0.1494 S33: 0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92009 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.444 REMARK 200 RESOLUTION RANGE LOW (A) : 60.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM BIS-TRIS (PH 6.5), 23 % (W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 100 MM MGCL2, AND 2.5% GLYCEROL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.40950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 ALA A 106 REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 PRO A 113 REMARK 465 LEU A 114 REMARK 465 GLN A 115 REMARK 465 SER A 116 REMARK 465 LYS A 161 REMARK 465 PRO A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 LEU A 165 REMARK 465 SER A 166 REMARK 465 GLN A 167 REMARK 465 GLY B 105 REMARK 465 ALA B 106 REMARK 465 MET B 107 REMARK 465 GLY B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 PRO B 113 REMARK 465 LEU B 114 REMARK 465 GLN B 115 REMARK 465 SER B 116 REMARK 465 LYS B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 VAL B 164 REMARK 465 LEU B 165 REMARK 465 SER B 166 REMARK 465 GLN B 287 REMARK 465 GLU B 288 REMARK 465 HIS B 289 REMARK 465 ARG B 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 124 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 361 O HOH B 502 1.46 REMARK 500 HE21 GLN B 366 O HOH B 505 1.58 REMARK 500 O PRO B 390 HG1 THR B 391 1.60 REMARK 500 O HOH A 584 O HOH A 633 2.02 REMARK 500 O HOH B 501 O HOH B 582 2.07 REMARK 500 OD1 ASP B 359 O HOH B 501 2.08 REMARK 500 OH TYR B 361 O HOH B 502 2.14 REMARK 500 O HOH A 534 O HOH A 636 2.17 REMARK 500 OE1 GLU A 244 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 326 HG1 THR A 391 2646 1.58 REMARK 500 O HOH A 553 O HOH B 501 2645 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -137.64 -123.54 REMARK 500 SER A 183 -2.65 74.14 REMARK 500 ASP A 252 36.18 -151.76 REMARK 500 LEU B 129 -138.00 -122.71 REMARK 500 SER B 183 -2.31 74.91 REMARK 500 GLN B 221 -110.91 50.61 REMARK 500 ASP B 252 38.89 -147.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WTP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WTP B 401 DBREF 7KP6 A 110 391 UNP Q07912 ACK1_HUMAN 110 391 DBREF 7KP6 B 110 391 UNP Q07912 ACK1_HUMAN 110 391 SEQADV 7KP6 GLY A 105 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 ALA A 106 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 MET A 107 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 GLY A 108 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 SER A 109 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 GLY B 105 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 ALA B 106 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 MET B 107 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 GLY B 108 UNP Q07912 EXPRESSION TAG SEQADV 7KP6 SER B 109 UNP Q07912 EXPRESSION TAG SEQRES 1 A 287 GLY ALA MET GLY SER GLY GLU GLY PRO LEU GLN SER LEU SEQRES 2 A 287 THR CYS LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU SEQRES 3 A 287 LYS LEU GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY SEQRES 4 A 287 GLU TRP ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA SEQRES 5 A 287 VAL LYS CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU SEQRES 6 A 287 ALA MET ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SEQRES 7 A 287 SER LEU ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL SEQRES 8 A 287 VAL LEU THR PRO PRO MET LYS MET VAL THR GLU LEU ALA SEQRES 9 A 287 PRO LEU GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN SEQRES 10 A 287 GLY HIS PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL SEQRES 11 A 287 GLN VAL ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG SEQRES 12 A 287 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU SEQRES 13 A 287 ALA THR ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU SEQRES 14 A 287 MET ARG ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET SEQRES 15 A 287 GLN GLU HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO SEQRES 16 A 287 GLU SER LEU LYS THR ARG THR PHE SER HIS ALA SER ASP SEQRES 17 A 287 THR TRP MET PHE GLY VAL THR LEU TRP GLU MET PHE THR SEQRES 18 A 287 TYR GLY GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN SEQRES 19 A 287 ILE LEU HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO SEQRES 20 A 287 ARG PRO GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET SEQRES 21 A 287 VAL GLN CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR SEQRES 22 A 287 PHE VAL ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO SEQRES 23 A 287 THR SEQRES 1 B 287 GLY ALA MET GLY SER GLY GLU GLY PRO LEU GLN SER LEU SEQRES 2 B 287 THR CYS LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU SEQRES 3 B 287 LYS LEU GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY SEQRES 4 B 287 GLU TRP ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA SEQRES 5 B 287 VAL LYS CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU SEQRES 6 B 287 ALA MET ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SEQRES 7 B 287 SER LEU ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL SEQRES 8 B 287 VAL LEU THR PRO PRO MET LYS MET VAL THR GLU LEU ALA SEQRES 9 B 287 PRO LEU GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN SEQRES 10 B 287 GLY HIS PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL SEQRES 11 B 287 GLN VAL ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG SEQRES 12 B 287 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU SEQRES 13 B 287 ALA THR ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU SEQRES 14 B 287 MET ARG ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET SEQRES 15 B 287 GLN GLU HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO SEQRES 16 B 287 GLU SER LEU LYS THR ARG THR PHE SER HIS ALA SER ASP SEQRES 17 B 287 THR TRP MET PHE GLY VAL THR LEU TRP GLU MET PHE THR SEQRES 18 B 287 TYR GLY GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN SEQRES 19 B 287 ILE LEU HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO SEQRES 20 B 287 ARG PRO GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET SEQRES 21 B 287 VAL GLN CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR SEQRES 22 B 287 PHE VAL ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO SEQRES 23 B 287 THR HET WTP A 401 55 HET CL A 402 1 HET CL A 403 1 HET WTP B 401 55 HETNAM WTP 5-CHLORO-N~2~-[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]-N~4~- HETNAM 2 WTP {[(2R)-OXOLAN-2-YL]METHYL}PYRIMIDINE-2,4-DIAMINE HETNAM CL CHLORIDE ION FORMUL 3 WTP 2(C20 H27 CL N6 O) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *279(H2 O) HELIX 1 AA1 GLY A 122 LYS A 124 5 3 HELIX 2 AA2 GLU A 169 HIS A 182 1 14 HELIX 3 AA3 SER A 212 ARG A 218 1 7 HELIX 4 AA4 HIS A 220 PHE A 224 5 5 HELIX 5 AA5 LEU A 225 LYS A 246 1 22 HELIX 6 AA6 ALA A 254 ARG A 256 5 3 HELIX 7 AA7 PRO A 293 CYS A 297 5 5 HELIX 8 AA8 ALA A 298 ARG A 305 1 8 HELIX 9 AA9 SER A 308 THR A 325 1 18 HELIX 10 AB1 ASN A 335 GLU A 346 1 12 HELIX 11 AB2 PRO A 357 TRP A 368 1 12 HELIX 12 AB3 LYS A 371 ARG A 375 5 5 HELIX 13 AB4 THR A 377 ALA A 388 1 12 HELIX 14 AB5 GLY B 122 LYS B 124 5 3 HELIX 15 AB6 PRO B 168 HIS B 182 1 15 HELIX 16 AB7 LEU B 213 GLN B 221 1 9 HELIX 17 AB8 GLY B 222 PHE B 224 5 3 HELIX 18 AB9 LEU B 225 LYS B 246 1 22 HELIX 19 AC1 ALA B 254 ARG B 256 5 3 HELIX 20 AC2 PRO B 293 CYS B 297 5 5 HELIX 21 AC3 ALA B 298 ARG B 305 1 8 HELIX 22 AC4 SER B 308 THR B 325 1 18 HELIX 23 AC5 ASN B 335 LYS B 345 1 11 HELIX 24 AC6 PRO B 357 TRP B 368 1 12 HELIX 25 AC7 LYS B 371 ARG B 375 5 5 HELIX 26 AC8 THR B 377 GLU B 387 1 11 SHEET 1 AA1 6 CYS A 119 LEU A 120 0 SHEET 2 AA1 6 LEU A 192 VAL A 196 1 O VAL A 195 N CYS A 119 SHEET 3 AA1 6 LYS A 202 GLU A 206 -1 O LYS A 202 N VAL A 196 SHEET 4 AA1 6 THR A 152 CYS A 159 -1 N LYS A 158 O MET A 203 SHEET 5 AA1 6 VAL A 139 ASP A 146 -1 N TRP A 145 O VAL A 153 SHEET 6 AA1 6 LEU A 126 ASP A 134 -1 N LEU A 129 O ARG A 142 SHEET 1 AA2 2 PHE A 248 ILE A 249 0 SHEET 2 AA2 2 ARG A 275 ALA A 276 -1 O ARG A 275 N ILE A 249 SHEET 1 AA3 2 LEU A 258 THR A 262 0 SHEET 2 AA3 2 LEU A 265 ILE A 268 -1 O LYS A 267 N LEU A 259 SHEET 1 AA4 2 TYR A 284 VAL A 285 0 SHEET 2 AA4 2 THR A 306 PHE A 307 -1 O PHE A 307 N TYR A 284 SHEET 1 AA5 6 CYS B 119 LEU B 120 0 SHEET 2 AA5 6 LEU B 192 VAL B 196 1 O TYR B 193 N CYS B 119 SHEET 3 AA5 6 LYS B 202 GLU B 206 -1 O VAL B 204 N GLY B 194 SHEET 4 AA5 6 THR B 152 CYS B 159 -1 N ALA B 156 O THR B 205 SHEET 5 AA5 6 VAL B 139 ASP B 146 -1 N TRP B 145 O VAL B 153 SHEET 6 AA5 6 LEU B 126 ASP B 134 -1 N LEU B 132 O VAL B 140 SHEET 1 AA6 3 GLY B 211 SER B 212 0 SHEET 2 AA6 3 LEU B 258 THR B 262 -1 O LEU B 260 N GLY B 211 SHEET 3 AA6 3 LEU B 265 ILE B 268 -1 O LYS B 267 N LEU B 259 SHEET 1 AA7 2 PHE B 248 ILE B 249 0 SHEET 2 AA7 2 ARG B 275 ALA B 276 -1 O ARG B 275 N ILE B 249 SHEET 1 AA8 2 TYR B 284 VAL B 285 0 SHEET 2 AA8 2 THR B 306 PHE B 307 -1 O PHE B 307 N TYR B 284 CISPEP 1 PRO A 199 PRO A 200 0 -4.32 CISPEP 2 PRO B 199 PRO B 200 0 -4.43 SITE 1 AC1 12 LEU A 132 VAL A 140 ALA A 156 LYS A 158 SITE 2 AC1 12 THR A 205 GLU A 206 LEU A 207 ALA A 208 SITE 3 AC1 12 PRO A 209 GLY A 211 LEU A 259 HOH A 598 SITE 1 AC2 5 ARG A 216 HIS A 220 HIS A 223 ARG A 263 SITE 2 AC2 5 HOH A 630 SITE 1 AC3 3 ARG A 251 GLN A 287 ARG A 290 SITE 1 AC4 8 LEU B 132 ALA B 156 THR B 205 GLU B 206 SITE 2 AC4 8 ALA B 208 GLY B 211 LEU B 259 GLY B 269 CRYST1 71.016 42.819 92.623 90.00 99.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014081 0.000000 0.002395 0.00000 SCALE2 0.000000 0.023354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010951 0.00000