HEADER HYDROLASE 12-NOV-20 7KPR TITLE STRUCTURE OF WILD-TYPE PPM1H PHOSPHATASE AT 3.1 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PHOSPHATASE 1H; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPM1H, ARHCL1, KIAA1157, URCC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAB GTPASE, MEMBRANE TRAFFICKING, PPM FAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.KHAN,D.WASCHBUSCH REVDAT 3 18-OCT-23 7KPR 1 REMARK REVDAT 2 16-FEB-22 7KPR 1 JRNL REVDAT 1 04-AUG-21 7KPR 0 JRNL AUTH D.WASCHBUSCH,K.BERNDSEN,P.LIS,A.KNEBEL,Y.P.LAM,D.R.ALESSI, JRNL AUTH 2 A.R.KHAN JRNL TITL STRUCTURAL BASIS FOR THE SPECIFICITY OF PPM1H PHOSPHATASE JRNL TITL 2 FOR RAB GTPASES. JRNL REF EMBO REP. V. 22 52675 2021 JRNL REFN ESSN 1469-3178 JRNL PMID 34580980 JRNL DOI 10.15252/EMBR.202152675 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7800 - 7.2300 1.00 2718 161 0.1519 0.1630 REMARK 3 2 7.2300 - 5.7500 1.00 2737 152 0.1929 0.1953 REMARK 3 3 5.7500 - 5.0300 1.00 2744 143 0.1859 0.1957 REMARK 3 4 5.0300 - 4.5700 1.00 2740 144 0.1719 0.2139 REMARK 3 5 4.5700 - 4.2500 1.00 2740 141 0.1742 0.2003 REMARK 3 6 4.2500 - 4.0000 1.00 2726 140 0.1947 0.2367 REMARK 3 7 4.0000 - 3.8000 1.00 2751 146 0.2224 0.2510 REMARK 3 8 3.8000 - 3.6300 1.00 2743 139 0.2229 0.2547 REMARK 3 9 3.6300 - 3.4900 1.00 2748 145 0.2311 0.3011 REMARK 3 10 3.4900 - 3.3700 1.00 2733 164 0.2536 0.2676 REMARK 3 11 3.3700 - 3.2700 1.00 2758 135 0.2608 0.3419 REMARK 3 12 3.2700 - 3.1700 1.00 2681 150 0.2655 0.3535 REMARK 3 13 3.1700 - 3.0900 0.90 2498 116 0.3166 0.3488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.354 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.014 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6416 REMARK 3 ANGLE : 0.964 8688 REMARK 3 CHIRALITY : 0.055 966 REMARK 3 PLANARITY : 0.006 1126 REMARK 3 DIHEDRAL : 17.010 2386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.8518 10.7430 21.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.4726 T22: 0.4722 REMARK 3 T33: 0.6310 T12: 0.0620 REMARK 3 T13: 0.0649 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.1156 L22: 1.5770 REMARK 3 L33: 2.7793 L12: -0.1430 REMARK 3 L13: -0.3729 L23: -0.0876 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.0705 S13: -0.2675 REMARK 3 S21: 0.2916 S22: -0.1431 S23: 0.0778 REMARK 3 S31: 0.2660 S32: 0.1985 S33: 0.2524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 35 through 104 or REMARK 3 resid 142 through 183 or resid 235 REMARK 3 through 511)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 35 through 511) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19927 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 28.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6B67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% ISOPROPANOL, 5% PEG4000, 0.05M REMARK 280 MGCL2, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.84200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.84200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 HIS A 31 REMARK 465 MET A 32 REMARK 465 SER A 33 REMARK 465 ASP A 34 REMARK 465 LYS A 106 REMARK 465 ALA A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 VAL A 110 REMARK 465 THR A 111 REMARK 465 SER A 112 REMARK 465 THR A 113 REMARK 465 PRO A 114 REMARK 465 ASN A 115 REMARK 465 ARG A 116 REMARK 465 ASN A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 LYS A 120 REMARK 465 ARG A 121 REMARK 465 ARG A 122 REMARK 465 SER A 123 REMARK 465 SER A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 ASN A 127 REMARK 465 GLY A 128 REMARK 465 GLU A 129 REMARK 465 GLY A 130 REMARK 465 LEU A 131 REMARK 465 GLN A 132 REMARK 465 LEU A 133 REMARK 465 LYS A 134 REMARK 465 GLU A 135 REMARK 465 ASN A 136 REMARK 465 SER A 137 REMARK 465 GLU A 138 REMARK 465 SER A 139 REMARK 465 GLU A 140 REMARK 465 GLY A 141 REMARK 465 CYS A 191 REMARK 465 LEU A 192 REMARK 465 GLY A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 PRO A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 THR A 199 REMARK 465 PRO A 200 REMARK 465 ALA A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 THR A 205 REMARK 465 LEU A 206 REMARK 465 THR A 207 REMARK 465 ARG A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 LEU A 212 REMARK 465 ARG A 213 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 VAL A 216 REMARK 465 GLY A 217 REMARK 465 ALA A 218 REMARK 465 PRO A 219 REMARK 465 GLY A 220 REMARK 465 SER A 221 REMARK 465 PRO A 222 REMARK 465 SER A 223 REMARK 465 THR A 224 REMARK 465 PRO A 225 REMARK 465 PRO A 226 REMARK 465 THR A 227 REMARK 465 ARG A 228 REMARK 465 LYS A 512 REMARK 465 LEU A 513 REMARK 465 SER A 514 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 HIS B 31 REMARK 465 MET B 32 REMARK 465 LYS B 105 REMARK 465 LYS B 106 REMARK 465 ALA B 107 REMARK 465 GLY B 108 REMARK 465 ALA B 109 REMARK 465 VAL B 110 REMARK 465 THR B 111 REMARK 465 SER B 112 REMARK 465 THR B 113 REMARK 465 PRO B 114 REMARK 465 ASN B 115 REMARK 465 ARG B 116 REMARK 465 ASN B 117 REMARK 465 SER B 118 REMARK 465 SER B 119 REMARK 465 LYS B 120 REMARK 465 ARG B 121 REMARK 465 ARG B 122 REMARK 465 SER B 123 REMARK 465 SER B 124 REMARK 465 LEU B 125 REMARK 465 PRO B 126 REMARK 465 ASN B 127 REMARK 465 GLY B 128 REMARK 465 GLU B 129 REMARK 465 GLY B 130 REMARK 465 LEU B 131 REMARK 465 GLN B 132 REMARK 465 LEU B 133 REMARK 465 LYS B 134 REMARK 465 GLU B 135 REMARK 465 ASN B 136 REMARK 465 SER B 137 REMARK 465 GLU B 138 REMARK 465 SER B 139 REMARK 465 GLU B 140 REMARK 465 GLY B 141 REMARK 465 SER B 184 REMARK 465 ALA B 185 REMARK 465 VAL B 186 REMARK 465 LEU B 187 REMARK 465 PRO B 188 REMARK 465 PRO B 189 REMARK 465 THR B 190 REMARK 465 CYS B 191 REMARK 465 LEU B 192 REMARK 465 GLY B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 PRO B 196 REMARK 465 GLU B 197 REMARK 465 ASN B 198 REMARK 465 THR B 199 REMARK 465 PRO B 200 REMARK 465 ALA B 201 REMARK 465 ASN B 202 REMARK 465 SER B 203 REMARK 465 ARG B 204 REMARK 465 THR B 205 REMARK 465 LEU B 206 REMARK 465 THR B 207 REMARK 465 ARG B 208 REMARK 465 ALA B 209 REMARK 465 ALA B 210 REMARK 465 SER B 211 REMARK 465 LEU B 212 REMARK 465 ARG B 213 REMARK 465 GLY B 214 REMARK 465 GLY B 215 REMARK 465 VAL B 216 REMARK 465 GLY B 217 REMARK 465 ALA B 218 REMARK 465 PRO B 219 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 465 PRO B 222 REMARK 465 SER B 223 REMARK 465 THR B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 THR B 227 REMARK 465 ARG B 228 REMARK 465 PHE B 229 REMARK 465 PHE B 230 REMARK 465 THR B 231 REMARK 465 GLU B 232 REMARK 465 LYS B 233 REMARK 465 LYS B 234 REMARK 465 LYS B 512 REMARK 465 LEU B 513 REMARK 465 SER B 514 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 429 NH2 ARG B 466 2.04 REMARK 500 OD1 ASP A 429 NH2 ARG A 466 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 187 CB - CG - CD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 183 -135.15 -149.37 REMARK 500 ALA A 185 136.22 88.57 REMARK 500 PHE A 230 49.51 38.08 REMARK 500 GLU A 232 -134.44 -112.90 REMARK 500 LYS A 233 129.89 -170.06 REMARK 500 ASP A 253 170.08 -54.91 REMARK 500 LEU A 254 -59.78 73.03 REMARK 500 ASP A 365 -68.65 54.76 REMARK 500 LYS A 379 21.31 -79.61 REMARK 500 THR A 385 -51.15 -141.98 REMARK 500 HIS A 400 96.83 -24.70 REMARK 500 TYR A 424 142.73 -170.38 REMARK 500 PRO A 457 -1.03 -59.71 REMARK 500 LYS A 483 -112.35 -110.97 REMARK 500 ILE A 489 -152.38 -108.14 REMARK 500 LEU B 254 -59.32 73.76 REMARK 500 ASP B 365 -69.83 48.15 REMARK 500 THR B 385 -50.36 -140.26 REMARK 500 HIS B 400 96.23 -20.48 REMARK 500 SER B 402 -170.00 -101.10 REMARK 500 LYS B 423 1.15 -65.47 REMARK 500 PRO B 457 0.44 -60.14 REMARK 500 ILE B 489 -152.63 -105.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 GLY A 152 O 72.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD2 REMARK 620 2 ASP A 437 OD1 71.9 REMARK 620 3 ASP A 498 OD1 153.8 120.2 REMARK 620 4 ASP A 498 OD2 141.5 73.6 47.3 REMARK 620 5 HOH A 701 O 73.9 66.8 89.3 77.3 REMARK 620 6 HOH A 704 O 111.5 95.6 91.3 88.2 159.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 ASP B 151 OD2 47.9 REMARK 620 3 ASP B 437 OD1 112.3 64.4 REMARK 620 4 ASP B 498 OD2 125.8 108.1 68.3 REMARK 620 5 HOH B 701 O 79.3 56.8 59.8 53.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 GLY B 152 O 82.1 REMARK 620 N 1 DBREF 7KPR A 33 514 UNP Q9ULR3 PPM1H_HUMAN 33 514 DBREF 7KPR B 33 514 UNP Q9ULR3 PPM1H_HUMAN 33 514 SEQADV 7KPR GLY A 29 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR SER A 30 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR HIS A 31 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR MET A 32 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR ALA A 288 UNP Q9ULR3 ASP 288 VARIANT SEQADV 7KPR GLY B 29 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR SER B 30 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR HIS B 31 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR MET B 32 UNP Q9ULR3 EXPRESSION TAG SEQADV 7KPR ALA B 288 UNP Q9ULR3 ASP 288 VARIANT SEQRES 1 A 486 GLY SER HIS MET SER ASP LEU PRO LEU ARG PHE PRO TYR SEQRES 2 A 486 GLY ARG PRO GLU PHE LEU GLY LEU SER GLN ASP GLU VAL SEQRES 3 A 486 GLU CYS SER ALA ASP HIS ILE ALA ARG PRO ILE LEU ILE SEQRES 4 A 486 LEU LYS GLU THR ARG ARG LEU PRO TRP ALA THR GLY TYR SEQRES 5 A 486 ALA GLU VAL ILE ASN ALA GLY LYS SER THR HIS ASN GLU SEQRES 6 A 486 ASP GLN ALA SER CYS GLU VAL LEU THR VAL LYS LYS LYS SEQRES 7 A 486 ALA GLY ALA VAL THR SER THR PRO ASN ARG ASN SER SER SEQRES 8 A 486 LYS ARG ARG SER SER LEU PRO ASN GLY GLU GLY LEU GLN SEQRES 9 A 486 LEU LYS GLU ASN SER GLU SER GLU GLY VAL SER CYS HIS SEQRES 10 A 486 TYR TRP SER LEU PHE ASP GLY HIS ALA GLY SER GLY ALA SEQRES 11 A 486 ALA VAL VAL ALA SER ARG LEU LEU GLN HIS HIS ILE THR SEQRES 12 A 486 GLU GLN LEU GLN ASP ILE VAL ASP ILE LEU LYS ASN SER SEQRES 13 A 486 ALA VAL LEU PRO PRO THR CYS LEU GLY GLU GLU PRO GLU SEQRES 14 A 486 ASN THR PRO ALA ASN SER ARG THR LEU THR ARG ALA ALA SEQRES 15 A 486 SER LEU ARG GLY GLY VAL GLY ALA PRO GLY SER PRO SER SEQRES 16 A 486 THR PRO PRO THR ARG PHE PHE THR GLU LYS LYS ILE PRO SEQRES 17 A 486 HIS GLU CYS LEU VAL ILE GLY ALA LEU GLU SER ALA PHE SEQRES 18 A 486 LYS GLU MET ASP LEU GLN ILE GLU ARG GLU ARG SER SER SEQRES 19 A 486 TYR ASN ILE SER GLY GLY CYS THR ALA LEU ILE VAL ILE SEQRES 20 A 486 CYS LEU LEU GLY LYS LEU TYR VAL ALA ASN ALA GLY ALA SEQRES 21 A 486 SER ARG ALA ILE ILE ILE ARG ASN GLY GLU ILE ILE PRO SEQRES 22 A 486 MET SER SER GLU PHE THR PRO GLU THR GLU ARG GLN ARG SEQRES 23 A 486 LEU GLN TYR LEU ALA PHE MET GLN PRO HIS LEU LEU GLY SEQRES 24 A 486 ASN GLU PHE THR HIS LEU GLU PHE PRO ARG ARG VAL GLN SEQRES 25 A 486 ARG LYS GLU LEU GLY LYS LYS MET LEU TYR ARG ASP PHE SEQRES 26 A 486 ASN MET THR GLY TRP ALA TYR LYS THR ILE GLU ASP GLU SEQRES 27 A 486 ASP LEU LYS PHE PRO LEU ILE TYR GLY GLU GLY LYS LYS SEQRES 28 A 486 ALA ARG VAL MET ALA THR ILE GLY VAL THR ARG GLY LEU SEQRES 29 A 486 GLY ASP HIS ASP LEU LYS VAL HIS ASP SER ASN ILE TYR SEQRES 30 A 486 ILE LYS PRO PHE LEU SER SER ALA PRO GLU VAL ARG ILE SEQRES 31 A 486 TYR ASP LEU SER LYS TYR ASP HIS GLY SER ASP ASP VAL SEQRES 32 A 486 LEU ILE LEU ALA THR ASP GLY LEU TRP ASP VAL LEU SER SEQRES 33 A 486 ASN GLU GLU VAL ALA GLU ALA ILE THR GLN PHE LEU PRO SEQRES 34 A 486 ASN CYS ASP PRO ASP ASP PRO HIS ARG TYR THR LEU ALA SEQRES 35 A 486 ALA GLN ASP LEU VAL MET ARG ALA ARG GLY VAL LEU LYS SEQRES 36 A 486 ASP ARG GLY TRP ARG ILE SER ASN ASP ARG LEU GLY SER SEQRES 37 A 486 GLY ASP ASP ILE SER VAL TYR VAL ILE PRO LEU ILE HIS SEQRES 38 A 486 GLY ASN LYS LEU SER SEQRES 1 B 486 GLY SER HIS MET SER ASP LEU PRO LEU ARG PHE PRO TYR SEQRES 2 B 486 GLY ARG PRO GLU PHE LEU GLY LEU SER GLN ASP GLU VAL SEQRES 3 B 486 GLU CYS SER ALA ASP HIS ILE ALA ARG PRO ILE LEU ILE SEQRES 4 B 486 LEU LYS GLU THR ARG ARG LEU PRO TRP ALA THR GLY TYR SEQRES 5 B 486 ALA GLU VAL ILE ASN ALA GLY LYS SER THR HIS ASN GLU SEQRES 6 B 486 ASP GLN ALA SER CYS GLU VAL LEU THR VAL LYS LYS LYS SEQRES 7 B 486 ALA GLY ALA VAL THR SER THR PRO ASN ARG ASN SER SER SEQRES 8 B 486 LYS ARG ARG SER SER LEU PRO ASN GLY GLU GLY LEU GLN SEQRES 9 B 486 LEU LYS GLU ASN SER GLU SER GLU GLY VAL SER CYS HIS SEQRES 10 B 486 TYR TRP SER LEU PHE ASP GLY HIS ALA GLY SER GLY ALA SEQRES 11 B 486 ALA VAL VAL ALA SER ARG LEU LEU GLN HIS HIS ILE THR SEQRES 12 B 486 GLU GLN LEU GLN ASP ILE VAL ASP ILE LEU LYS ASN SER SEQRES 13 B 486 ALA VAL LEU PRO PRO THR CYS LEU GLY GLU GLU PRO GLU SEQRES 14 B 486 ASN THR PRO ALA ASN SER ARG THR LEU THR ARG ALA ALA SEQRES 15 B 486 SER LEU ARG GLY GLY VAL GLY ALA PRO GLY SER PRO SER SEQRES 16 B 486 THR PRO PRO THR ARG PHE PHE THR GLU LYS LYS ILE PRO SEQRES 17 B 486 HIS GLU CYS LEU VAL ILE GLY ALA LEU GLU SER ALA PHE SEQRES 18 B 486 LYS GLU MET ASP LEU GLN ILE GLU ARG GLU ARG SER SER SEQRES 19 B 486 TYR ASN ILE SER GLY GLY CYS THR ALA LEU ILE VAL ILE SEQRES 20 B 486 CYS LEU LEU GLY LYS LEU TYR VAL ALA ASN ALA GLY ALA SEQRES 21 B 486 SER ARG ALA ILE ILE ILE ARG ASN GLY GLU ILE ILE PRO SEQRES 22 B 486 MET SER SER GLU PHE THR PRO GLU THR GLU ARG GLN ARG SEQRES 23 B 486 LEU GLN TYR LEU ALA PHE MET GLN PRO HIS LEU LEU GLY SEQRES 24 B 486 ASN GLU PHE THR HIS LEU GLU PHE PRO ARG ARG VAL GLN SEQRES 25 B 486 ARG LYS GLU LEU GLY LYS LYS MET LEU TYR ARG ASP PHE SEQRES 26 B 486 ASN MET THR GLY TRP ALA TYR LYS THR ILE GLU ASP GLU SEQRES 27 B 486 ASP LEU LYS PHE PRO LEU ILE TYR GLY GLU GLY LYS LYS SEQRES 28 B 486 ALA ARG VAL MET ALA THR ILE GLY VAL THR ARG GLY LEU SEQRES 29 B 486 GLY ASP HIS ASP LEU LYS VAL HIS ASP SER ASN ILE TYR SEQRES 30 B 486 ILE LYS PRO PHE LEU SER SER ALA PRO GLU VAL ARG ILE SEQRES 31 B 486 TYR ASP LEU SER LYS TYR ASP HIS GLY SER ASP ASP VAL SEQRES 32 B 486 LEU ILE LEU ALA THR ASP GLY LEU TRP ASP VAL LEU SER SEQRES 33 B 486 ASN GLU GLU VAL ALA GLU ALA ILE THR GLN PHE LEU PRO SEQRES 34 B 486 ASN CYS ASP PRO ASP ASP PRO HIS ARG TYR THR LEU ALA SEQRES 35 B 486 ALA GLN ASP LEU VAL MET ARG ALA ARG GLY VAL LEU LYS SEQRES 36 B 486 ASP ARG GLY TRP ARG ILE SER ASN ASP ARG LEU GLY SER SEQRES 37 B 486 GLY ASP ASP ILE SER VAL TYR VAL ILE PRO LEU ILE HIS SEQRES 38 B 486 GLY ASN LYS LEU SER HET MG A 601 1 HET MG A 602 1 HET MG B 601 1 HET MG B 602 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *14(H2 O) HELIX 1 AA1 PRO A 44 GLY A 48 5 5 HELIX 2 AA2 SER A 50 ALA A 58 1 9 HELIX 3 AA3 LEU A 74 THR A 78 5 5 HELIX 4 AA4 SER A 156 LYS A 182 1 27 HELIX 5 AA5 PRO A 236 ARG A 260 1 25 HELIX 6 AA6 GLU A 311 GLN A 322 1 12 HELIX 7 AA7 PRO A 323 GLY A 327 5 5 HELIX 8 AA8 GLN A 340 LEU A 344 5 5 HELIX 9 AA9 ASP A 365 LYS A 369 5 5 HELIX 10 AB1 ILE A 406 LEU A 410 5 5 HELIX 11 AB2 THR A 436 ASP A 441 1 6 HELIX 12 AB3 SER A 444 LEU A 456 1 13 HELIX 13 AB4 PRO A 457 CYS A 459 5 3 HELIX 14 AB5 HIS A 465 GLY A 480 1 16 HELIX 15 AB6 ILE A 489 ARG A 493 5 5 HELIX 16 AB7 ILE A 508 ASN A 511 5 4 HELIX 17 AB8 PRO B 44 GLY B 48 5 5 HELIX 18 AB9 SER B 50 ALA B 58 1 9 HELIX 19 AC1 LEU B 74 THR B 78 5 5 HELIX 20 AC2 SER B 156 ASP B 176 1 21 HELIX 21 AC3 VAL B 178 LYS B 182 5 5 HELIX 22 AC4 PRO B 236 ARG B 260 1 25 HELIX 23 AC5 GLU B 311 GLN B 322 1 12 HELIX 24 AC6 PRO B 323 GLY B 327 5 5 HELIX 25 AC7 GLU B 364 LYS B 369 5 6 HELIX 26 AC8 ILE B 406 LEU B 410 5 5 HELIX 27 AC9 THR B 436 ASP B 441 1 6 HELIX 28 AD1 SER B 444 LEU B 456 1 13 HELIX 29 AD2 PRO B 457 CYS B 459 5 3 HELIX 30 AD3 HIS B 465 GLY B 480 1 16 HELIX 31 AD4 ILE B 489 ARG B 493 5 5 HELIX 32 AD5 ILE B 508 ASN B 511 5 4 SHEET 1 AA1 6 LEU A 66 ILE A 67 0 SHEET 2 AA1 6 GLY A 79 VAL A 83 -1 O GLU A 82 N LEU A 66 SHEET 3 AA1 6 ILE A 500 PRO A 506 -1 O VAL A 504 N GLY A 79 SHEET 4 AA1 6 VAL A 431 ALA A 435 -1 N LEU A 434 O TYR A 503 SHEET 5 AA1 6 ARG A 290 ARG A 295 -1 N ILE A 292 O ILE A 433 SHEET 6 AA1 6 GLU A 298 PRO A 301 -1 O ILE A 300 N ILE A 293 SHEET 1 AA2 4 ASP A 94 THR A 102 0 SHEET 2 AA2 4 SER A 143 HIS A 153 -1 O CYS A 144 N LEU A 101 SHEET 3 AA2 4 GLY A 268 LEU A 277 -1 O LEU A 272 N LEU A 149 SHEET 4 AA2 4 LEU A 392 GLY A 393 -1 O LEU A 392 N CYS A 269 SHEET 1 AA3 5 ASP A 94 THR A 102 0 SHEET 2 AA3 5 SER A 143 HIS A 153 -1 O CYS A 144 N LEU A 101 SHEET 3 AA3 5 GLY A 268 LEU A 277 -1 O LEU A 272 N LEU A 149 SHEET 4 AA3 5 LYS A 280 ALA A 286 -1 O ALA A 284 N ILE A 273 SHEET 5 AA3 5 GLU A 415 ASP A 420 -1 O TYR A 419 N LEU A 281 SHEET 1 AA4 2 PHE A 330 THR A 331 0 SHEET 2 AA4 2 PHE A 370 PRO A 371 1 O PHE A 370 N THR A 331 SHEET 1 AA5 2 LYS A 347 TYR A 350 0 SHEET 2 AA5 2 ALA A 359 THR A 362 -1 O LYS A 361 N MET A 348 SHEET 1 AA6 2 ILE A 373 TYR A 374 0 SHEET 2 AA6 2 ARG A 381 VAL A 382 -1 O ARG A 381 N TYR A 374 SHEET 1 AA7 2 VAL A 481 LEU A 482 0 SHEET 2 AA7 2 TRP A 487 ARG A 488 -1 O ARG A 488 N VAL A 481 SHEET 1 AA8 6 ILE B 65 ILE B 67 0 SHEET 2 AA8 6 GLY B 79 VAL B 83 -1 O GLU B 82 N LEU B 66 SHEET 3 AA8 6 ILE B 500 PRO B 506 -1 O VAL B 502 N ALA B 81 SHEET 4 AA8 6 VAL B 431 ALA B 435 -1 N LEU B 434 O TYR B 503 SHEET 5 AA8 6 ARG B 290 ARG B 295 -1 N ILE B 292 O ILE B 433 SHEET 6 AA8 6 GLU B 298 PRO B 301 -1 O ILE B 300 N ILE B 293 SHEET 1 AA9 4 ASP B 94 THR B 102 0 SHEET 2 AA9 4 SER B 143 HIS B 153 -1 O CYS B 144 N LEU B 101 SHEET 3 AA9 4 GLY B 268 LEU B 277 -1 O LEU B 272 N LEU B 149 SHEET 4 AA9 4 LEU B 392 GLY B 393 -1 O LEU B 392 N CYS B 269 SHEET 1 AB1 5 ASP B 94 THR B 102 0 SHEET 2 AB1 5 SER B 143 HIS B 153 -1 O CYS B 144 N LEU B 101 SHEET 3 AB1 5 GLY B 268 LEU B 277 -1 O LEU B 272 N LEU B 149 SHEET 4 AB1 5 LYS B 280 ALA B 286 -1 O LYS B 280 N LEU B 277 SHEET 5 AB1 5 GLU B 415 ASP B 420 -1 O TYR B 419 N LEU B 281 SHEET 1 AB2 2 PHE B 330 THR B 331 0 SHEET 2 AB2 2 PHE B 370 PRO B 371 1 O PHE B 370 N THR B 331 SHEET 1 AB3 2 LYS B 347 TYR B 350 0 SHEET 2 AB3 2 ALA B 359 THR B 362 -1 O LYS B 361 N MET B 348 SHEET 1 AB4 2 ILE B 373 TYR B 374 0 SHEET 2 AB4 2 ARG B 381 VAL B 382 -1 O ARG B 381 N TYR B 374 SHEET 1 AB5 2 VAL B 481 LYS B 483 0 SHEET 2 AB5 2 GLY B 486 ARG B 488 -1 O GLY B 486 N LYS B 483 LINK OD1 ASP A 151 MG MG A 601 1555 1555 2.60 LINK OD2 ASP A 151 MG MG A 602 1555 1555 2.14 LINK O GLY A 152 MG MG A 601 1555 1555 2.55 LINK OD1 ASP A 437 MG MG A 602 1555 1555 2.56 LINK OD1 ASP A 498 MG MG A 602 1555 1555 2.98 LINK OD2 ASP A 498 MG MG A 602 1555 1555 1.93 LINK MG MG A 602 O HOH A 701 1555 1555 1.95 LINK MG MG A 602 O HOH A 704 1555 1555 2.01 LINK OD1 ASP B 151 MG MG B 601 1555 1555 2.87 LINK OD2 ASP B 151 MG MG B 601 1555 1555 2.44 LINK OD1 ASP B 151 MG MG B 602 1555 1555 2.30 LINK O GLY B 152 MG MG B 602 1555 1555 2.64 LINK OD1 ASP B 437 MG MG B 601 1555 1555 2.66 LINK OD2 ASP B 498 MG MG B 601 1555 1555 2.16 LINK MG MG B 601 O HOH B 701 1555 1555 2.90 CRYST1 69.684 102.160 148.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006725 0.00000 MTRIX1 1 0.381201 -0.734659 0.561214 7.20692 1 MTRIX2 1 -0.727956 -0.612731 -0.307638 37.64354 1 MTRIX3 1 0.569882 -0.291267 -0.768373 30.32074 1