HEADER VIRUS LIKE PARTICLE 13-NOV-20 7KQ5 TITLE CRYO-EM STRUCTURE OF A THERMOSTABLE ENCAPSULIN FROM T. MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARITIMACIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOTOGA BACTERIOCIN; COMPND 5 EC: 3.4.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 ATCC: 43589; SOURCE 7 GENE: TM_0785; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS ENCAPSULIN, HK97 FOLD, FLAVIN-BINDING, ICOSAHEDRAL, VIRUS LIKE KEYWDS 2 PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR T.I.WIRYAMAN,N.TOOR REVDAT 4 06-MAR-24 7KQ5 1 REMARK REVDAT 3 19-MAY-21 7KQ5 1 JRNL REVDAT 2 12-MAY-21 7KQ5 1 JRNL REMARK REVDAT 1 28-APR-21 7KQ5 0 JRNL AUTH T.WIRYAMAN,N.TOOR JRNL TITL CRYO-EM STRUCTURE OF A THERMOSTABLE BACTERIAL JRNL TITL 2 NANOCOMPARTMENT. JRNL REF IUCRJ V. 8 342 2021 JRNL REFN ESSN 2052-2525 JRNL PMID 33953921 JRNL DOI 10.1107/S2052252521001949 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, SERIALEM, CTFFIND, PHENIX, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3DKT REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : MAP WAS CROPPED TO A 342 BOX SIZE AND DENSITY REMARK 3 MODIFIED WITH PHENIX RESOLVECRYOEM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.000 REMARK 3 NUMBER OF PARTICLES : 185459 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7KQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252893. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENCAPSULIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : PLASMA CLEANED IN GATAN SOLARUS REMARK 245 SYSTEM REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 UL SAMPLE APPLIED TO THE REMARK 245 CARBON SIDE OF THE GRID AND REMARK 245 BLOTTED FOR 4S BEFORE PLUNGING. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2772 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3350.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.670820 0.162460 0.723607 -68.49727 REMARK 350 BIOMT2 2 -0.688191 0.500000 0.525731 81.48275 REMARK 350 BIOMT3 2 -0.276393 -0.850651 0.447214 206.61965 REMARK 350 BIOMT1 3 0.138197 -0.425325 0.894427 48.30242 REMARK 350 BIOMT2 3 -0.951057 -0.309017 0.000000 277.98971 REMARK 350 BIOMT3 3 0.276393 -0.850651 -0.447214 248.64157 REMARK 350 BIOMT1 4 0.138197 -0.951057 0.276393 188.98586 REMARK 350 BIOMT2 4 -0.425325 -0.309017 -0.850651 317.95494 REMARK 350 BIOMT3 4 0.894427 0.000000 -0.447214 67.99290 REMARK 350 BIOMT1 5 0.670820 -0.688191 -0.276393 159.13333 REMARK 350 BIOMT2 5 0.162460 0.500000 -0.850651 146.14785 REMARK 350 BIOMT3 5 0.723607 0.525731 0.447214 -85.67604 REMARK 350 BIOMT1 6 -0.638197 -0.262866 0.723607 144.82735 REMARK 350 BIOMT2 6 -0.262866 -0.809017 -0.525731 319.50726 REMARK 350 BIOMT3 6 0.723607 -0.525731 0.447214 43.65413 REMARK 350 BIOMT1 7 -0.447214 -0.850651 -0.276393 316.63445 REMARK 350 BIOMT2 7 0.525731 0.000000 -0.850651 162.96553 REMARK 350 BIOMT3 7 0.723607 -0.525731 0.447214 43.65412 REMARK 350 BIOMT1 8 0.361803 -0.262866 -0.894427 220.84572 REMARK 350 BIOMT2 8 0.587785 0.809017 0.000000 -48.80679 REMARK 350 BIOMT3 8 0.723607 -0.525731 0.447214 43.65412 REMARK 350 BIOMT1 9 0.670820 0.688191 -0.276393 -10.16206 REMARK 350 BIOMT2 9 -0.162460 0.500000 0.850651 -23.14755 REMARK 350 BIOMT3 9 0.723607 -0.525731 0.447214 43.65414 REMARK 350 BIOMT1 10 0.052786 0.688191 0.723607 -57.14400 REMARK 350 BIOMT2 10 -0.688191 -0.500000 0.525731 204.48305 REMARK 350 BIOMT3 10 0.723607 -0.525731 0.447214 43.65414 REMARK 350 BIOMT1 11 -0.052786 -0.688191 -0.723607 303.14459 REMARK 350 BIOMT2 11 -0.688191 -0.500000 0.525731 204.48305 REMARK 350 BIOMT3 11 -0.723607 0.525731 -0.447214 202.34645 REMARK 350 BIOMT1 12 0.638197 0.262866 -0.723607 101.17325 REMARK 350 BIOMT2 12 -0.262866 -0.809017 -0.525731 319.50726 REMARK 350 BIOMT3 12 -0.723607 0.525731 -0.447214 202.34646 REMARK 350 BIOMT1 13 0.447214 0.850651 0.276393 -70.63386 REMARK 350 BIOMT2 13 0.525731 0.000000 -0.850651 162.96553 REMARK 350 BIOMT3 13 -0.723607 0.525731 -0.447214 202.34647 REMARK 350 BIOMT1 14 -0.361803 0.262866 0.894427 25.15486 REMARK 350 BIOMT2 14 0.587785 0.809017 0.000000 -48.80679 REMARK 350 BIOMT3 14 -0.723607 0.525731 -0.447214 202.34647 REMARK 350 BIOMT1 15 -0.670820 -0.688191 0.276393 256.16265 REMARK 350 BIOMT2 15 -0.162460 0.500000 0.850651 -23.14755 REMARK 350 BIOMT3 15 -0.723607 0.525731 -0.447214 202.34645 REMARK 350 BIOMT1 16 -0.309017 0.951057 0.000000 44.02924 REMARK 350 BIOMT2 16 0.951057 0.309017 0.000000 -31.98911 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 246.00060 REMARK 350 BIOMT1 17 -0.861803 0.425325 0.276393 142.69076 REMARK 350 BIOMT2 17 0.425325 0.309017 0.850651 -71.95434 REMARK 350 BIOMT3 17 0.276393 0.850651 -0.447214 39.38095 REMARK 350 BIOMT1 18 -0.947214 -0.162460 -0.276393 293.48689 REMARK 350 BIOMT2 18 -0.162460 -0.500000 0.850651 99.85275 REMARK 350 BIOMT3 18 -0.276393 0.850651 0.447214 -2.64098 REMARK 350 BIOMT1 19 -0.447214 0.000000 -0.894427 288.02251 REMARK 350 BIOMT2 19 0.000000 -1.000000 0.000000 246.00060 REMARK 350 BIOMT3 19 -0.894427 0.000000 0.447214 178.00768 REMARK 350 BIOMT1 20 -0.052786 0.688191 -0.723607 133.84921 REMARK 350 BIOMT2 20 0.688191 -0.500000 -0.525731 164.51785 REMARK 350 BIOMT3 20 -0.723607 -0.525731 -0.447214 331.67663 REMARK 350 BIOMT1 21 0.947214 0.162460 0.276393 -47.48630 REMARK 350 BIOMT2 21 -0.162460 -0.500000 0.850651 99.85276 REMARK 350 BIOMT3 21 0.276393 -0.850651 -0.447214 248.64157 REMARK 350 BIOMT1 22 0.447214 0.000000 0.894427 -42.02192 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 246.00060 REMARK 350 BIOMT3 22 0.894427 0.000000 -0.447214 67.99291 REMARK 350 BIOMT1 23 0.052786 -0.688191 0.723607 112.15138 REMARK 350 BIOMT2 23 0.688191 -0.500000 -0.525731 164.51785 REMARK 350 BIOMT3 23 0.723607 0.525731 0.447214 -85.67604 REMARK 350 BIOMT1 24 0.309017 -0.951057 0.000000 201.97135 REMARK 350 BIOMT2 24 0.951057 0.309017 0.000000 -31.98911 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -0.00001 REMARK 350 BIOMT1 25 0.861803 -0.425325 -0.276393 103.30983 REMARK 350 BIOMT2 25 0.425325 0.309017 0.850651 -71.95434 REMARK 350 BIOMT3 25 -0.276393 -0.850651 0.447214 206.61964 REMARK 350 BIOMT1 26 -0.447214 -0.525731 0.723607 153.66892 REMARK 350 BIOMT2 26 0.850651 0.000000 0.525731 -46.29508 REMARK 350 BIOMT3 26 -0.276393 0.850651 0.447214 -2.64098 REMARK 350 BIOMT1 27 -0.138197 -0.951057 -0.276393 290.97520 REMARK 350 BIOMT2 27 0.425325 -0.309017 0.850651 4.06403 REMARK 350 BIOMT3 27 -0.894427 0.000000 0.447214 178.00768 REMARK 350 BIOMT1 28 0.638197 -0.262866 -0.723607 165.83834 REMARK 350 BIOMT2 28 0.262866 -0.809017 0.525731 125.51201 REMARK 350 BIOMT3 28 -0.723607 -0.525731 -0.447214 331.67663 REMARK 350 BIOMT1 29 0.809017 0.587785 0.000000 -48.80679 REMARK 350 BIOMT2 29 0.587785 -0.809017 0.000000 150.21188 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 246.00061 REMARK 350 BIOMT1 30 0.138197 0.425325 0.894427 -56.32790 REMARK 350 BIOMT2 30 0.951057 -0.309017 0.000000 44.02926 REMARK 350 BIOMT3 30 0.276393 0.850651 -0.447214 39.38096 REMARK 350 BIOMT1 31 -0.361803 -0.587785 -0.723607 328.80383 REMARK 350 BIOMT2 31 -0.262866 0.809017 -0.525731 120.48859 REMARK 350 BIOMT3 31 0.894427 0.000000 -0.447214 67.99289 REMARK 350 BIOMT1 32 0.361803 0.262866 -0.894427 156.18063 REMARK 350 BIOMT2 32 -0.587785 0.809017 0.000000 95.78872 REMARK 350 BIOMT3 32 0.723607 0.525731 0.447214 -85.67604 REMARK 350 BIOMT1 33 0.309017 0.951057 0.000000 -31.98913 REMARK 350 BIOMT2 33 -0.951057 0.309017 0.000000 201.97134 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 34 -0.447214 0.525731 0.723607 24.33876 REMARK 350 BIOMT2 34 -0.850651 0.000000 -0.525731 292.29568 REMARK 350 BIOMT3 34 -0.276393 -0.850651 0.447214 206.61964 REMARK 350 BIOMT1 35 -0.861803 -0.425325 0.276393 247.32107 REMARK 350 BIOMT2 35 -0.425325 0.309017 -0.850651 241.93657 REMARK 350 BIOMT3 35 0.276393 -0.850651 -0.447214 248.64156 REMARK 350 BIOMT1 36 -0.138197 0.951057 -0.276393 57.01473 REMARK 350 BIOMT2 36 -0.425325 -0.309017 -0.850651 317.95494 REMARK 350 BIOMT3 36 -0.894427 0.000000 0.447214 178.00769 REMARK 350 BIOMT1 37 -0.670820 0.688191 0.276393 86.86726 REMARK 350 BIOMT2 37 0.162460 0.500000 -0.850651 146.14785 REMARK 350 BIOMT3 37 -0.723607 -0.525731 -0.447214 331.67663 REMARK 350 BIOMT1 38 -1.000000 0.000000 0.000000 246.00059 REMARK 350 BIOMT2 38 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 246.00059 REMARK 350 BIOMT1 39 -0.670820 -0.162460 -0.723607 314.49786 REMARK 350 BIOMT2 39 -0.688191 0.500000 0.525731 81.48275 REMARK 350 BIOMT3 39 0.276393 0.850651 -0.447214 39.38094 REMARK 350 BIOMT1 40 -0.138197 0.425325 -0.894427 197.69817 REMARK 350 BIOMT2 40 -0.951057 -0.309017 0.000000 277.98971 REMARK 350 BIOMT3 40 -0.276393 0.850651 0.447214 -2.64098 REMARK 350 BIOMT1 41 0.947214 -0.162460 0.276393 -7.52109 REMARK 350 BIOMT2 41 0.162460 -0.500000 -0.850651 269.14815 REMARK 350 BIOMT3 41 0.276393 0.850651 -0.447214 39.38096 REMARK 350 BIOMT1 42 0.670820 -0.162460 0.723607 -28.53206 REMARK 350 BIOMT2 42 0.688191 0.500000 -0.525731 41.51755 REMARK 350 BIOMT3 42 -0.276393 0.850651 0.447214 -2.64097 REMARK 350 BIOMT1 43 0.361803 -0.587785 0.723607 61.79228 REMARK 350 BIOMT2 43 0.262866 0.809017 0.525731 -73.50666 REMARK 350 BIOMT3 43 -0.894427 0.000000 0.447214 178.00769 REMARK 350 BIOMT1 44 0.447214 -0.850651 0.276393 138.62676 REMARK 350 BIOMT2 44 -0.525731 0.000000 0.850651 83.03507 REMARK 350 BIOMT3 44 -0.723607 -0.525731 -0.447214 331.67663 REMARK 350 BIOMT1 45 0.809017 -0.587785 0.000000 95.78874 REMARK 350 BIOMT2 45 -0.587785 -0.809017 0.000000 294.80739 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 246.00060 REMARK 350 BIOMT1 46 -0.361803 -0.262866 0.894427 89.81996 REMARK 350 BIOMT2 46 -0.587785 0.809017 0.000000 95.78872 REMARK 350 BIOMT3 46 -0.723607 -0.525731 -0.447214 331.67663 REMARK 350 BIOMT1 47 -0.309017 -0.951057 0.000000 277.98972 REMARK 350 BIOMT2 47 -0.951057 0.309017 0.000000 201.97134 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 246.00059 REMARK 350 BIOMT1 48 0.447214 -0.525731 -0.723607 221.66183 REMARK 350 BIOMT2 48 -0.850651 0.000000 -0.525731 292.29568 REMARK 350 BIOMT3 48 0.276393 0.850651 -0.447214 39.38095 REMARK 350 BIOMT1 49 0.861803 0.425325 -0.276393 -1.32048 REMARK 350 BIOMT2 49 -0.425325 0.309017 -0.850651 241.93657 REMARK 350 BIOMT3 49 -0.276393 0.850651 0.447214 -2.64097 REMARK 350 BIOMT1 50 0.361803 0.587785 0.723607 -82.80324 REMARK 350 BIOMT2 50 -0.262866 0.809017 -0.525731 120.48859 REMARK 350 BIOMT3 50 -0.894427 0.000000 0.447214 178.00770 REMARK 350 BIOMT1 51 -0.138197 -0.425325 -0.894427 302.32849 REMARK 350 BIOMT2 51 0.951057 -0.309017 0.000000 44.02926 REMARK 350 BIOMT3 51 -0.276393 -0.850651 0.447214 206.61963 REMARK 350 BIOMT1 52 0.447214 0.525731 -0.723607 92.33167 REMARK 350 BIOMT2 52 0.850651 0.000000 0.525731 -46.29508 REMARK 350 BIOMT3 52 0.276393 -0.850651 -0.447214 248.64157 REMARK 350 BIOMT1 53 0.138197 0.951057 0.276393 -44.97462 REMARK 350 BIOMT2 53 0.425325 -0.309017 0.850651 4.06403 REMARK 350 BIOMT3 53 0.894427 0.000000 -0.447214 67.99291 REMARK 350 BIOMT1 54 -0.638197 0.262866 0.723607 80.16225 REMARK 350 BIOMT2 54 0.262866 -0.809017 0.525731 125.51201 REMARK 350 BIOMT3 54 0.723607 0.525731 0.447214 -85.67604 REMARK 350 BIOMT1 55 -0.809017 -0.587785 0.000000 294.80738 REMARK 350 BIOMT2 55 0.587785 -0.809017 0.000000 150.21188 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 -0.00002 REMARK 350 BIOMT1 56 -0.447214 0.850651 -0.276393 107.37383 REMARK 350 BIOMT2 56 -0.525731 0.000000 0.850651 83.03507 REMARK 350 BIOMT3 56 0.723607 0.525731 0.447214 -85.67604 REMARK 350 BIOMT1 57 -0.809017 0.587785 0.000000 150.21185 REMARK 350 BIOMT2 57 -0.587785 -0.809017 0.000000 294.80739 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 58 -0.947214 0.162460 -0.276393 253.52168 REMARK 350 BIOMT2 58 0.162460 -0.500000 -0.850651 269.14815 REMARK 350 BIOMT3 58 -0.276393 -0.850651 0.447214 206.61963 REMARK 350 BIOMT1 59 -0.670820 0.162460 -0.723607 274.53265 REMARK 350 BIOMT2 59 0.688191 0.500000 -0.525731 41.51755 REMARK 350 BIOMT3 59 0.276393 -0.850651 -0.447214 248.64156 REMARK 350 BIOMT1 60 -0.361803 0.587785 -0.723607 184.20830 REMARK 350 BIOMT2 60 0.262866 0.809017 0.525731 -73.50666 REMARK 350 BIOMT3 60 0.894427 0.000000 -0.447214 67.99290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 184 HH12 ARG A 193 1.51 REMARK 500 OE1 GLU A 2 O HOH A 401 1.93 REMARK 500 O HOH A 448 O HOH A 467 1.99 REMARK 500 O HOH A 504 O HOH A 525 2.05 REMARK 500 O HOH A 503 O HOH A 526 2.10 REMARK 500 O HOH A 481 O HOH A 498 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 -2.71 -142.34 REMARK 500 ASN A 62 51.92 -118.49 REMARK 500 SER A 143 74.19 -116.94 REMARK 500 GLU A 184 83.76 -69.01 REMARK 500 ASP A 211 -114.70 -123.05 REMARK 500 GLU A 235 -61.39 -104.50 REMARK 500 LYS A 239 102.13 47.11 REMARK 500 ASP A 240 -18.81 81.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-22992 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF A THERMOSTABLE ENCAPSULIN FROM T. MARITIMA DBREF 7KQ5 A 1 265 UNP Q9WZP2 MARIT_THEMA 1 265 SEQRES 1 A 265 MET GLU PHE LEU LYS ARG SER PHE ALA PRO LEU THR GLU SEQRES 2 A 265 LYS GLN TRP GLN GLU ILE ASP ASN ARG ALA ARG GLU ILE SEQRES 3 A 265 PHE LYS THR GLN LEU TYR GLY ARG LYS PHE VAL ASP VAL SEQRES 4 A 265 GLU GLY PRO TYR GLY TRP GLU TYR ALA ALA HIS PRO LEU SEQRES 5 A 265 GLY GLU VAL GLU VAL LEU SER ASP GLU ASN GLU VAL VAL SEQRES 6 A 265 LYS TRP GLY LEU ARG LYS SER LEU PRO LEU ILE GLU LEU SEQRES 7 A 265 ARG ALA THR PHE THR LEU ASP LEU TRP GLU LEU ASP ASN SEQRES 8 A 265 LEU GLU ARG GLY LYS PRO ASN VAL ASP LEU SER SER LEU SEQRES 9 A 265 GLU GLU THR VAL ARG LYS VAL ALA GLU PHE GLU ASP GLU SEQRES 10 A 265 VAL ILE PHE ARG GLY CYS GLU LYS SER GLY VAL LYS GLY SEQRES 11 A 265 LEU LEU SER PHE GLU GLU ARG LYS ILE GLU CYS GLY SER SEQRES 12 A 265 THR PRO LYS ASP LEU LEU GLU ALA ILE VAL ARG ALA LEU SEQRES 13 A 265 SER ILE PHE SER LYS ASP GLY ILE GLU GLY PRO TYR THR SEQRES 14 A 265 LEU VAL ILE ASN THR ASP ARG TRP ILE ASN PHE LEU LYS SEQRES 15 A 265 GLU GLU ALA GLY HIS TYR PRO LEU GLU LYS ARG VAL GLU SEQRES 16 A 265 GLU CYS LEU ARG GLY GLY LYS ILE ILE THR THR PRO ARG SEQRES 17 A 265 ILE GLU ASP ALA LEU VAL VAL SER GLU ARG GLY GLY ASP SEQRES 18 A 265 PHE LYS LEU ILE LEU GLY GLN ASP LEU SER ILE GLY TYR SEQRES 19 A 265 GLU ASP ARG GLU LYS ASP ALA VAL ARG LEU PHE ILE THR SEQRES 20 A 265 GLU THR PHE THR PHE GLN VAL VAL ASN PRO GLU ALA LEU SEQRES 21 A 265 ILE LEU LEU LYS PHE HET FMN A 301 50 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *148(H2 O) HELIX 1 AA1 MET A 1 ALA A 9 5 9 HELIX 2 AA2 THR A 12 LEU A 31 1 20 HELIX 3 AA3 TYR A 32 PHE A 36 5 5 HELIX 4 AA4 LEU A 86 ASN A 91 1 6 HELIX 5 AA5 LEU A 101 GLY A 122 1 22 HELIX 6 AA6 GLY A 130 GLU A 136 5 7 HELIX 7 AA7 THR A 144 ASP A 162 1 19 HELIX 8 AA8 THR A 174 GLU A 184 1 11 HELIX 9 AA9 PRO A 189 LEU A 198 1 10 HELIX 10 AB1 ASN A 256 GLU A 258 5 3 SHEET 1 AA1 4 ASP A 38 GLU A 40 0 SHEET 2 AA1 4 PHE A 222 ARG A 237 1 O LEU A 224 N ASP A 38 SHEET 3 AA1 4 ALA A 241 VAL A 254 -1 O ARG A 243 N ASP A 236 SHEET 4 AA1 4 ILE A 76 ASP A 85 -1 N ILE A 76 O PHE A 250 SHEET 1 AA2 2 ALA A 49 VAL A 57 0 SHEET 2 AA2 2 GLY A 68 PRO A 74 -1 O LEU A 73 N HIS A 50 SHEET 1 AA3 5 LYS A 138 GLU A 140 0 SHEET 2 AA3 5 LEU A 260 LYS A 264 1 O LEU A 262 N ILE A 139 SHEET 3 AA3 5 ALA A 212 SER A 216 -1 N VAL A 214 O ILE A 261 SHEET 4 AA3 5 TYR A 168 ASN A 173 -1 N VAL A 171 O LEU A 213 SHEET 5 AA3 5 LYS A 202 THR A 206 1 O LYS A 202 N LEU A 170 CISPEP 1 GLY A 41 PRO A 42 0 -3.71 CISPEP 2 GLY A 166 PRO A 167 0 0.66 SITE 1 AC1 6 GLU A 77 ARG A 79 ALA A 80 THR A 81 SITE 2 AC1 6 GLU A 235 HOH A 504 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000