HEADER IMMUNE SYSTEM/VIRAL PROTEIN 16-NOV-20 7KQI TITLE ANTIBODIES THAT ENGAGE THE HEMAGGLUTININ RECEPTOR-BINDING SITE OF TITLE 2 INFLUENZA B VIRUSES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1209 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1209 FAB LIGHT CHAIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEMAGGLUTININ; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA B VIRUS; SOURCE 13 ORGANISM_TAXID: 416674; SOURCE 14 STRAIN: B/YAMAGATA/16/1988; SOURCE 15 GENE: HA; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS INFLUENZA, ANTIBODY, RECEPTOR BINDING SITE, VACCINE, B CELL, IMMUNE KEYWDS 2 SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.BAJIC,S.C.HARRISON REVDAT 3 18-OCT-23 7KQI 1 REMARK REVDAT 2 20-JAN-21 7KQI 1 JRNL REVDAT 1 16-DEC-20 7KQI 0 JRNL AUTH G.BAJIC,S.C.HARRISON JRNL TITL ANTIBODIES THAT ENGAGE THE HEMAGGLUTININ RECEPTOR-BINDING JRNL TITL 2 SITE OF INFLUENZA B VIRUSES. JRNL REF ACS INFECT DIS. V. 7 1 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33274930 JRNL DOI 10.1021/ACSINFECDIS.0C00726 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.377 REMARK 3 R VALUE (WORKING SET) : 0.372 REMARK 3 FREE R VALUE : 0.420 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6100 - 7.6300 0.99 1454 145 0.3476 0.4186 REMARK 3 2 7.6200 - 6.0600 1.00 1351 140 0.4136 0.4180 REMARK 3 3 6.0500 - 5.2900 1.00 1324 134 0.3942 0.4330 REMARK 3 4 5.2900 - 4.8100 1.00 1292 161 0.3799 0.4228 REMARK 3 5 4.8100 - 4.4600 1.00 1284 147 0.4042 0.4106 REMARK 3 6 4.4600 - 4.2000 1.00 1305 124 0.3902 0.4315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.990 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 51.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 183.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 235.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5183 REMARK 3 ANGLE : 0.867 7039 REMARK 3 CHIRALITY : 0.056 806 REMARK 3 PLANARITY : 0.006 897 REMARK 3 DIHEDRAL : 10.688 745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8864 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.59 REMARK 200 R MERGE (I) : 0.74000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.60 REMARK 200 R MERGE FOR SHELL (I) : 6.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FQJ, 4FQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM CITRATE PH 7.0, 20% REMARK 280 (WT/VOL) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.42667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.85333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.64000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 196.06667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.21333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.42667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 156.85333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 196.06667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.64000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 GLU A 0 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 THR A 141 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 GLY A 144 REMARK 465 GLU A 223 REMARK 465 PRO A 224 REMARK 465 LYS A 225 REMARK 465 SER A 226 REMARK 465 CYS A 227 REMARK 465 ASP A 228 REMARK 465 LYS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 ALA C -1 REMARK 465 SER C 0 REMARK 465 SER C 201 REMARK 465 SER C 202 REMARK 465 CYS C 213 REMARK 465 PRO B 31 REMARK 465 LEU B 32 REMARK 465 THR B 33 REMARK 465 THR B 34 REMARK 465 THR B 35 REMARK 465 PRO B 36 REMARK 465 THR B 37 REMARK 465 LYS B 38 REMARK 465 SER B 39 REMARK 465 HIS B 40 REMARK 465 PHE B 41 REMARK 465 ALA B 42 REMARK 465 ASN B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 GLY B 46 REMARK 465 THR B 47 REMARK 465 LYS B 48 REMARK 465 THR B 49 REMARK 465 ARG B 50 REMARK 465 GLY B 51 REMARK 465 LYS B 52 REMARK 465 LEU B 53 REMARK 465 CYS B 54 REMARK 465 ASP B 163 REMARK 465 ASN B 164 REMARK 465 LYS B 282 REMARK 465 GLY B 283 REMARK 465 SER B 284 REMARK 465 LEU B 285 REMARK 465 PRO B 286 REMARK 465 LEU B 287 REMARK 465 ILE B 288 REMARK 465 GLY B 289 REMARK 465 GLU B 290 REMARK 465 ALA B 291 REMARK 465 ASP B 292 REMARK 465 CYS B 293 REMARK 465 LEU B 294 REMARK 465 HIS B 295 REMARK 465 GLU B 296 REMARK 465 LYS B 297 REMARK 465 TYR B 298 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 LEU B 301 REMARK 465 ASN B 302 REMARK 465 LYS B 303 REMARK 465 SER B 304 REMARK 465 LYS B 305 REMARK 465 PRO B 306 REMARK 465 TYR B 307 REMARK 465 TYR B 308 REMARK 465 THR B 309 REMARK 465 GLY B 310 REMARK 465 GLU B 311 REMARK 465 HIS B 312 REMARK 465 ALA B 313 REMARK 465 LYS B 314 REMARK 465 ALA B 315 REMARK 465 ILE B 316 REMARK 465 GLY B 317 REMARK 465 ASN B 318 REMARK 465 CYS B 319 REMARK 465 PRO B 320 REMARK 465 ILE B 321 REMARK 465 TRP B 322 REMARK 465 VAL B 323 REMARK 465 LYS B 324 REMARK 465 THR B 325 REMARK 465 PRO B 326 REMARK 465 LEU B 327 REMARK 465 LYS B 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 232 OD2 ASP B 235 1.93 REMARK 500 OH TYR A 155 OE2 GLU A 158 2.02 REMARK 500 OG1 THR B 212 O THR B 220 2.04 REMARK 500 OG SER A 101 O TYR A 104 2.06 REMARK 500 OD2 ASP A 29 NH1 ARG B 162 2.09 REMARK 500 O ALA C 25 OG1 THR C 68 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER C 7 OG SER C 7 12545 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 47 -62.80 -101.86 REMARK 500 ASN A 76 56.60 38.41 REMARK 500 MET A 102 -9.75 69.96 REMARK 500 ASP A 103 -56.90 -121.55 REMARK 500 ASP A 154 77.20 59.15 REMARK 500 SER A 199 55.79 -94.64 REMARK 500 ASN A 215 14.07 57.30 REMARK 500 VAL A 218 109.03 -36.68 REMARK 500 PRO C 8 -163.92 -78.27 REMARK 500 ARG C 29 -24.39 70.52 REMARK 500 GLN C 30 -19.11 -153.53 REMARK 500 ALA C 50 -8.58 72.78 REMARK 500 ARG C 107 -167.95 -123.20 REMARK 500 ASP C 169 -5.81 66.36 REMARK 500 ASN B 56 -5.44 67.16 REMARK 500 ASN B 59 -12.88 75.43 REMARK 500 MET B 71 -1.88 73.38 REMARK 500 PHE B 95 139.79 -37.70 REMARK 500 SER B 142 2.14 -67.65 REMARK 500 TYR B 177 33.55 -97.19 REMARK 500 ILE B 178 -19.98 -45.53 REMARK 500 ASP B 235 -165.80 -128.07 REMARK 500 GLN B 262 -165.93 -129.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 217 VAL A 218 -136.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 150 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7KQI A -2 235 PDB 7KQI 7KQI -2 235 DBREF 7KQI C -1 213 PDB 7KQI 7KQI -1 213 DBREF 7KQI B 31 328 UNP A4D5Q0 A4D5Q0_INBYB 46 343 SEQRES 1 A 240 ALA SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 A 240 VAL GLN PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 A 240 SER GLY PHE THR PHE ASP ASP PHE THR MET HIS TRP VAL SEQRES 4 A 240 ARG GLN VAL PRO GLY LYS GLY LEU GLU TRP ILE SER SER SEQRES 5 A 240 ILE ASN TRP LYS GLY ASN ALA LEU ASP TYR ALA GLY SER SEQRES 6 A 240 VAL ARG GLY ARG PHE ALA ILE SER ARG ASP ASN ALA LYS SEQRES 7 A 240 ASN SER LEU TYR LEU GLN MET ASN SER LEU ARG VAL GLU SEQRES 8 A 240 ASP THR ALA LEU TYR TYR CYS ALA LYS ASP PHE ARG SER SEQRES 9 A 240 SER SER SER MET ASP TYR PHE TYR TYR TYR GLY MET GLY SEQRES 10 A 240 VAL TRP GLY GLN GLY THR THR VAL ILE VAL SER GLY ALA SEQRES 11 A 240 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 A 240 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 A 240 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 A 240 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 A 240 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 A 240 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 A 240 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 A 240 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS SEQRES 19 A 240 HIS HIS HIS HIS HIS HIS SEQRES 1 C 216 ALA SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 C 216 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 C 216 ALA SER GLN ASP ILE ARG GLN CYS LEU ASN TRP TYR GLN SEQRES 4 C 216 GLN LYS PRO GLY LYS PRO PRO LYS LEU LEU ILE TYR ASP SEQRES 5 C 216 ALA SER THR LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 C 216 GLY ARG GLY SER GLY THR HIS PHE THR PHE THR ILE SER SEQRES 7 C 216 SER LEU GLN ALA GLU ASP VAL ALA THR TYR TYR CYS GLN SEQRES 8 C 216 GLN PHE ALA ASN VAL PRO LEU ALA PHE GLY GLY GLY THR SEQRES 9 C 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 C 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 C 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 C 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 C 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 C 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 C 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 C 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 C 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 298 PRO LEU THR THR THR PRO THR LYS SER HIS PHE ALA ASN SEQRES 2 B 298 LEU LYS GLY THR LYS THR ARG GLY LYS LEU CYS PRO ASN SEQRES 3 B 298 CYS LEU ASN CYS THR ASP LEU ASP VAL ALA LEU GLY ARG SEQRES 4 B 298 PRO MET CYS MET GLY THR ILE PRO SER ALA LYS ALA SER SEQRES 5 B 298 ILE LEU HIS GLU VAL ARG PRO VAL THR SER GLY CYS PHE SEQRES 6 B 298 PRO ILE MET HIS ASP ARG THR LYS ILE ARG GLN LEU PRO SEQRES 7 B 298 ASN LEU LEU ARG GLY TYR GLU ASN ILE ARG LEU SER THR SEQRES 8 B 298 HIS ASN VAL ILE ASN ALA GLU ARG ALA PRO GLY GLY PRO SEQRES 9 B 298 TYR ARG LEU GLY THR SER GLY SER CYS PRO ASN VAL THR SEQRES 10 B 298 SER ARG ASN GLY PHE PHE ALA THR MET ALA TRP ALA VAL SEQRES 11 B 298 PRO ARG ASP ASN LYS THR ALA THR ASN PRO LEU THR VAL SEQRES 12 B 298 GLU VAL PRO TYR ILE CYS THR LYS GLY GLU ASP GLN ILE SEQRES 13 B 298 THR VAL TRP GLY PHE HIS SER ASP ASP LYS THR GLN MET SEQRES 14 B 298 LYS ASN LEU TYR GLY ASP SER ASN PRO GLN LYS PHE THR SEQRES 15 B 298 SER SER ALA ASN GLY VAL THR THR HIS TYR VAL SER GLN SEQRES 16 B 298 ILE GLY ASP PHE PRO ASN GLN THR GLU ASP GLY GLY LEU SEQRES 17 B 298 PRO GLN SER GLY ARG ILE VAL VAL ASP TYR MET VAL GLN SEQRES 18 B 298 LYS PRO GLY LYS THR GLY THR ILE VAL TYR GLN ARG GLY SEQRES 19 B 298 VAL LEU LEU PRO GLN LYS VAL TRP CYS ALA SER GLY ARG SEQRES 20 B 298 SER LYS VAL ILE LYS GLY SER LEU PRO LEU ILE GLY GLU SEQRES 21 B 298 ALA ASP CYS LEU HIS GLU LYS TYR GLY GLY LEU ASN LYS SEQRES 22 B 298 SER LYS PRO TYR TYR THR GLY GLU HIS ALA LYS ALA ILE SEQRES 23 B 298 GLY ASN CYS PRO ILE TRP VAL LYS THR PRO LEU LYS HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) HELIX 1 AA1 THR A 27 PHE A 31 5 5 HELIX 2 AA2 ARG A 83 THR A 87 5 5 HELIX 3 AA3 SER A 167 ALA A 169 5 3 HELIX 4 AA4 HIS A 211 ASN A 215 5 5 HELIX 5 AA5 GLN C 78 VAL C 82 5 5 HELIX 6 AA6 SER C 120 LYS C 125 1 6 HELIX 7 AA7 LYS C 182 GLU C 186 1 5 HELIX 8 AA8 THR B 61 LEU B 67 1 7 HELIX 9 AA9 MET B 98 THR B 102 5 5 HELIX 10 AB1 LYS B 103 ARG B 105 5 3 HELIX 11 AB2 GLN B 106 GLY B 113 1 8 HELIX 12 AB3 ASP B 195 TYR B 203 1 9 SHEET 1 AA1 4 GLN A 2 SER A 6 0 SHEET 2 AA1 4 LEU A 17 SER A 24 -1 O SER A 20 N SER A 6 SHEET 3 AA1 4 SER A 77 MET A 82 -1 O LEU A 78 N CYS A 21 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N ALA A 68 O GLN A 81 SHEET 1 AA2 6 LEU A 10 VAL A 11 0 SHEET 2 AA2 6 THR A 117 VAL A 121 1 O ILE A 120 N VAL A 11 SHEET 3 AA2 6 ALA A 88 ASP A 95 -1 N TYR A 90 O THR A 117 SHEET 4 AA2 6 MET A 33 GLN A 38 -1 N VAL A 36 O TYR A 91 SHEET 5 AA2 6 GLU A 45 ILE A 50 -1 O ILE A 47 N TRP A 35 SHEET 6 AA2 6 LEU A 57 TYR A 59 -1 O ASP A 58 N SER A 49 SHEET 1 AA3 4 LEU A 10 VAL A 11 0 SHEET 2 AA3 4 THR A 117 VAL A 121 1 O ILE A 120 N VAL A 11 SHEET 3 AA3 4 ALA A 88 ASP A 95 -1 N TYR A 90 O THR A 117 SHEET 4 AA3 4 MET A 110 TRP A 113 -1 O VAL A 112 N LYS A 94 SHEET 1 AA4 4 SER A 130 LEU A 134 0 SHEET 2 AA4 4 ALA A 146 TYR A 155 -1 O LEU A 151 N PHE A 132 SHEET 3 AA4 4 TYR A 187 VAL A 195 -1 O VAL A 195 N ALA A 146 SHEET 4 AA4 4 VAL A 174 THR A 176 -1 N HIS A 175 O VAL A 192 SHEET 1 AA5 4 SER A 130 LEU A 134 0 SHEET 2 AA5 4 ALA A 146 TYR A 155 -1 O LEU A 151 N PHE A 132 SHEET 3 AA5 4 TYR A 187 VAL A 195 -1 O VAL A 195 N ALA A 146 SHEET 4 AA5 4 VAL A 180 LEU A 181 -1 N VAL A 180 O SER A 188 SHEET 1 AA6 2 THR A 161 TRP A 165 0 SHEET 2 AA6 2 CYS A 207 ASN A 210 -1 O ASN A 208 N SER A 164 SHEET 1 AA7 4 MET C 4 SER C 7 0 SHEET 2 AA7 4 VAL C 19 ALA C 25 -1 O THR C 22 N SER C 7 SHEET 3 AA7 4 HIS C 69 ILE C 74 -1 O PHE C 72 N ILE C 21 SHEET 4 AA7 4 PHE C 61 SER C 66 -1 N ARG C 64 O THR C 71 SHEET 1 AA8 6 SER C 10 SER C 14 0 SHEET 2 AA8 6 THR C 101 LYS C 106 1 O LYS C 102 N LEU C 11 SHEET 3 AA8 6 THR C 84 GLN C 89 -1 N TYR C 85 O THR C 101 SHEET 4 AA8 6 LEU C 32 GLN C 37 -1 N TYR C 35 O TYR C 86 SHEET 5 AA8 6 PRO C 43 TYR C 48 -1 O ILE C 47 N TRP C 34 SHEET 6 AA8 6 THR C 52 LEU C 53 -1 O THR C 52 N TYR C 48 SHEET 1 AA9 4 SER C 10 SER C 14 0 SHEET 2 AA9 4 THR C 101 LYS C 106 1 O LYS C 102 N LEU C 11 SHEET 3 AA9 4 THR C 84 GLN C 89 -1 N TYR C 85 O THR C 101 SHEET 4 AA9 4 ALA C 96 PHE C 97 -1 O ALA C 96 N GLN C 89 SHEET 1 AB1 4 SER C 113 PHE C 117 0 SHEET 2 AB1 4 THR C 128 PHE C 138 -1 O VAL C 132 N PHE C 117 SHEET 3 AB1 4 TYR C 172 SER C 181 -1 O LEU C 180 N ALA C 129 SHEET 4 AB1 4 SER C 158 VAL C 162 -1 N GLN C 159 O THR C 177 SHEET 1 AB2 3 LYS C 144 VAL C 149 0 SHEET 2 AB2 3 VAL C 190 THR C 196 -1 O ALA C 192 N LYS C 148 SHEET 3 AB2 3 VAL C 204 ASN C 209 -1 O PHE C 208 N TYR C 191 SHEET 1 AB3 2 ALA B 81 ILE B 83 0 SHEET 2 AB3 2 LYS B 279 ILE B 281 1 O LYS B 279 N SER B 82 SHEET 1 AB4 5 ASN B 116 LEU B 119 0 SHEET 2 AB4 5 TRP B 272 SER B 275 -1 O SER B 275 N ASN B 116 SHEET 3 AB4 5 ASP B 184 SER B 193 -1 N ASP B 184 O ALA B 274 SHEET 4 AB4 5 VAL B 265 PRO B 268 -1 O LEU B 266 N GLY B 190 SHEET 5 AB4 5 MET B 156 TRP B 158 -1 N ALA B 157 O LEU B 267 SHEET 1 AB5 4 ASN B 116 LEU B 119 0 SHEET 2 AB5 4 TRP B 272 SER B 275 -1 O SER B 275 N ASN B 116 SHEET 3 AB5 4 ASP B 184 SER B 193 -1 N ASP B 184 O ALA B 274 SHEET 4 AB5 4 ARG B 243 GLN B 251 -1 O GLN B 251 N GLN B 185 SHEET 1 AB6 2 TYR B 135 ARG B 136 0 SHEET 2 AB6 2 VAL B 160 PRO B 161 -1 O VAL B 160 N ARG B 136 SHEET 1 AB7 4 LEU B 171 VAL B 175 0 SHEET 2 AB7 4 GLY B 257 TYR B 261 -1 O GLY B 257 N VAL B 175 SHEET 3 AB7 4 LYS B 210 ALA B 215 -1 N THR B 212 O VAL B 260 SHEET 4 AB7 4 VAL B 218 VAL B 223 -1 O TYR B 222 N PHE B 211 SSBOND 1 CYS A 21 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 150 CYS A 207 1555 1555 2.03 SSBOND 3 CYS C 23 CYS C 87 1555 1555 2.04 SSBOND 4 CYS C 133 CYS C 193 1555 1555 2.03 SSBOND 5 CYS B 60 CYS B 72 1555 1555 2.03 SSBOND 6 CYS B 179 CYS B 273 1555 1555 2.03 LINK ND2 ASN B 145 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 231 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.47 LINK O6 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 CISPEP 1 PHE A 156 PRO A 157 0 -2.95 CISPEP 2 GLU A 158 PRO A 159 0 1.97 CISPEP 3 SER C 7 PRO C 8 0 12.87 CISPEP 4 TYR C 139 PRO C 140 0 3.87 CRYST1 128.100 128.100 235.280 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007806 0.004507 0.000000 0.00000 SCALE2 0.000000 0.009014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004250 0.00000