HEADER VIRAL PROTEIN 17-NOV-20 7KQW TITLE CRYSTAL STRUCTURE OF SARS-COV-2 NSP3 MACRODOMAIN (C2 CRYSTAL FORM, TITLE 2 METHYLATED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRODOMAIN (UNP RESIDUES 1024-1192); COMPND 5 SYNONYM: NSP3,PL2-PRO,PAPAIN-LIKE PROTEASE,PAPAIN-LIKE PROTEINASE,PL- COMPND 6 PRO; COMPND 7 EC: 3.4.19.121, 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MACRODOMAIN, ADP-RIBOSE, SARS-COV-2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.J.CORREY,I.D.YOUNG,M.C.THOMPSON,J.S.FRASER REVDAT 5 15-NOV-23 7KQW 1 ATOM REVDAT 4 18-OCT-23 7KQW 1 REMARK REVDAT 3 30-JUN-21 7KQW 1 JRNL REVDAT 2 27-JAN-21 7KQW 1 COMPND REVDAT 1 09-DEC-20 7KQW 0 JRNL AUTH M.SCHULLER,G.J.CORREY,S.GAHBAUER,D.FEARON,T.WU,R.E.DIAZ, JRNL AUTH 2 I.D.YOUNG,L.CARVALHO MARTINS,D.H.SMITH,U.SCHULZE-GAHMEN, JRNL AUTH 3 T.W.OWENS,I.DESHPANDE,G.E.MERZ,A.C.THWIN,J.T.BIEL, JRNL AUTH 4 J.K.PETERS,M.MORITZ,N.HERRERA,H.T.KRATOCHVIL,A.AIMON, JRNL AUTH 5 J.M.BENNETT,J.BRANDAO NETO,A.E.COHEN,A.DIAS,A.DOUANGAMATH, JRNL AUTH 6 L.DUNNETT,O.FEDOROV,M.P.FERLA,M.R.FUCHS,T.J.GORRIE-STONE, JRNL AUTH 7 J.M.HOLTON,M.G.JOHNSON,T.KROJER,G.MEIGS,A.J.POWELL, JRNL AUTH 8 J.G.M.RACK,V.L.RANGEL,S.RUSSI,R.E.SKYNER,C.A.SMITH, JRNL AUTH 9 A.S.SOARES,J.L.WIERMAN,K.ZHU,P.O'BRIEN,N.JURA,A.ASHWORTH, JRNL AUTH10 J.J.IRWIN,M.C.THOMPSON,J.E.GESTWICKI,F.VON DELFT, JRNL AUTH11 B.K.SHOICHET,J.S.FRASER,I.AHEL JRNL TITL FRAGMENT BINDING TO THE NSP3 MACRODOMAIN OF SARS-COV-2 JRNL TITL 2 IDENTIFIED THROUGH CRYSTALLOGRAPHIC SCREENING AND JRNL TITL 3 COMPUTATIONAL DOCKING. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33853786 JRNL DOI 10.1126/SCIADV.ABF8711 REMARK 2 REMARK 2 RESOLUTION. 0.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 98177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4200 - 2.8900 0.98 3397 146 0.1222 0.1443 REMARK 3 2 2.8900 - 2.2900 0.98 3279 151 0.1214 0.1323 REMARK 3 3 2.2900 - 2.0000 0.97 3227 169 0.1129 0.1353 REMARK 3 4 2.0000 - 1.8200 0.98 3267 153 0.1210 0.1354 REMARK 3 5 1.8200 - 1.6900 0.97 3207 147 0.1180 0.1423 REMARK 3 6 1.6900 - 1.5900 0.97 3170 184 0.1100 0.1385 REMARK 3 7 1.5900 - 1.5100 0.97 3212 171 0.1073 0.1175 REMARK 3 8 1.5100 - 1.4400 0.97 3199 161 0.1114 0.1365 REMARK 3 9 1.4400 - 1.3900 0.97 3158 162 0.1098 0.1380 REMARK 3 10 1.3900 - 1.3400 0.96 3192 154 0.1131 0.1376 REMARK 3 11 1.3400 - 1.3000 0.96 3123 169 0.1143 0.1358 REMARK 3 12 1.3000 - 1.2600 0.96 3159 168 0.1189 0.1376 REMARK 3 13 1.2600 - 1.2300 0.96 3125 148 0.1180 0.1427 REMARK 3 14 1.2300 - 1.2000 0.95 3108 178 0.1202 0.1356 REMARK 3 15 1.2000 - 1.1700 0.95 3120 164 0.1223 0.1553 REMARK 3 16 1.1700 - 1.1500 0.95 3094 165 0.1242 0.1328 REMARK 3 17 1.1500 - 1.1200 0.94 3093 160 0.1285 0.1396 REMARK 3 18 1.1200 - 1.1000 0.94 3089 148 0.1307 0.1451 REMARK 3 19 1.1000 - 1.0800 0.94 3094 154 0.1460 0.1498 REMARK 3 20 1.0800 - 1.0600 0.93 3008 163 0.1592 0.1612 REMARK 3 21 1.0600 - 1.0500 0.95 3123 148 0.1859 0.2066 REMARK 3 22 1.0500 - 1.0300 0.93 3074 155 0.2127 0.2329 REMARK 3 23 1.0300 - 1.0200 0.93 2989 173 0.2285 0.2284 REMARK 3 24 1.0200 - 1.0000 0.93 3050 143 0.2404 0.2425 REMARK 3 25 1.0000 - 0.9900 0.93 3029 156 0.2757 0.2852 REMARK 3 26 0.9900 - 0.9800 0.91 3033 152 0.2851 0.3296 REMARK 3 27 0.9800 - 0.9600 0.92 2975 153 0.2908 0.3003 REMARK 3 28 0.9600 - 0.9500 0.91 2967 197 0.3138 0.2941 REMARK 3 29 0.9500 - 0.9400 0.90 2918 160 0.3307 0.3492 REMARK 3 30 0.9400 - 0.9300 0.89 2892 154 0.3573 0.3689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.77492 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 0.94 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103671 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.930 REMARK 200 RESOLUTION RANGE LOW (A) : 35.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 1.827 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.86 REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: PDB ENTRY 7KR0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8.5, 100 MM SODIUM REMARK 280 ACETATE, 28% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.57300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.32350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.57300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.32350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 102 O HOH A 202 1.54 REMARK 500 O HOH A 434 O HOH A 460 2.01 REMARK 500 O HOH A 404 O HOH A 407 2.11 REMARK 500 NZ LYS A 102 O HOH A 202 2.12 REMARK 500 O HOH A 212 O HOH A 368 2.12 REMARK 500 O HOH A 246 O HOH A 307 2.14 REMARK 500 O VAL A 30 O HOH A 204 2.15 REMARK 500 OE1 GLU A 25 O HOH A 206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 72 O HOH A 368 4546 1.60 REMARK 500 ND2 ASN A 72 O HOH A 368 4546 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 126 CB - CG - CD1 ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 10.91 -149.69 REMARK 500 HIS A 86 -131.50 55.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 488 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 489 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 490 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 491 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 492 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 493 DISTANCE = 7.22 ANGSTROMS DBREF 7KQW A 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192 SEQADV 7KQW SNM A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7KQW ASN A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7KQW ALA A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7KQW GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 173 SNM ASN ALA GLY GLU VAL ASN SER PHE SER GLY TYR LEU SEQRES 2 A 173 MLY LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE SEQRES 3 A 173 VAL GLU GLU ALA MLY LYS VAL LYS PRO THR VAL VAL VAL SEQRES 4 A 173 ASN ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL SEQRES 5 A 173 ALA GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN SEQRES 6 A 173 VAL GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU SEQRES 7 A 173 LYS VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU SEQRES 8 A 173 ALA LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN SEQRES 9 A 173 LYS GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU SEQRES 10 A 173 ASN PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SEQRES 11 A 173 SER ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU SEQRES 12 A 173 ARG VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU SEQRES 13 A 173 ALA VAL PHE ASP MLY ASN LEU TYR ASP MLY LEU VAL SER SEQRES 14 A 173 SER PHE LEU GLU MODRES 7KQW MLY A 11 LYS MODIFIED RESIDUE MODRES 7KQW MLY A 28 LYS MODIFIED RESIDUE MODRES 7KQW MLY A 158 LYS MODIFIED RESIDUE MODRES 7KQW MLY A 163 LYS MODIFIED RESIDUE HET SNM A -2 18 HET MLY A 11 27 HET MLY A 28 27 HET MLY A 158 27 HET MLY A 163 27 HETNAM SNM N,N-DIMETHYL-L-SERINE HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 SNM C5 H11 N O3 FORMUL 1 MLY 4(C8 H18 N2 O2) FORMUL 2 HOH *293(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 THR A 57 1 11 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ALA A 129 GLY A 133 5 5 HELIX 8 AA8 ASP A 135 VAL A 147 1 13 HELIX 9 AA9 ASP A 157 GLU A 170 1 14 SHEET 1 AA1 4 LEU A 10 MLY A 11 0 SHEET 2 AA1 4 VAL A 16 LYS A 19 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 ALA A 154 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 38 0 SHEET 2 AA2 3 HIS A 91 VAL A 95 1 O VAL A 95 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N CYS A 81 O HIS A 94 LINK C SNM A -2 N ASN A -1 1555 1555 1.43 LINK C LEU A 10 N MLY A 11 1555 1555 1.32 LINK C MLY A 11 N LEU A 12 1555 1555 1.33 LINK C ALA A 27 N MLY A 28 1555 1555 1.33 LINK C MLY A 28 N LYS A 29 1555 1555 1.33 LINK C ASP A 157 N MLY A 158 1555 1555 1.33 LINK C MLY A 158 N AASN A 159 1555 1555 1.33 LINK C MLY A 158 N BASN A 159 1555 1555 1.33 LINK C ASP A 162 N MLY A 163 1555 1555 1.33 LINK C MLY A 163 N LEU A 164 1555 1555 1.33 CRYST1 129.146 30.647 39.608 90.00 96.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007743 0.000000 0.000908 0.00000 SCALE2 0.000000 0.032630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025421 0.00000 CONECT 1 2 7 8 CONECT 2 1 3 5 9 CONECT 3 2 4 10 11 CONECT 4 3 12 CONECT 5 2 6 19 CONECT 6 5 CONECT 7 1 13 14 15 CONECT 8 1 16 17 18 CONECT 9 2 CONECT 10 3 CONECT 11 3 CONECT 12 4 CONECT 13 7 CONECT 14 7 CONECT 15 7 CONECT 16 8 CONECT 17 8 CONECT 18 8 CONECT 19 5 CONECT 190 207 CONECT 207 190 208 218 CONECT 208 207 209 216 219 CONECT 209 208 210 220 221 CONECT 210 209 211 222 223 CONECT 211 210 212 224 225 CONECT 212 211 213 226 227 CONECT 213 212 214 215 CONECT 214 213 228 229 230 CONECT 215 213 231 232 233 CONECT 216 208 217 234 CONECT 217 216 CONECT 218 207 CONECT 219 208 CONECT 220 209 CONECT 221 209 CONECT 222 210 CONECT 223 210 CONECT 224 211 CONECT 225 211 CONECT 226 212 CONECT 227 212 CONECT 228 214 CONECT 229 214 CONECT 230 214 CONECT 231 215 CONECT 232 215 CONECT 233 215 CONECT 234 216 CONECT 490 498 CONECT 498 490 499 509 CONECT 499 498 500 507 510 CONECT 500 499 501 511 512 CONECT 501 500 502 513 514 CONECT 502 501 503 515 516 CONECT 503 502 504 517 518 CONECT 504 503 505 506 CONECT 505 504 519 520 521 CONECT 506 504 522 523 524 CONECT 507 499 508 525 CONECT 508 507 CONECT 509 498 CONECT 510 499 CONECT 511 500 CONECT 512 500 CONECT 513 501 CONECT 514 501 CONECT 515 502 CONECT 516 502 CONECT 517 503 CONECT 518 503 CONECT 519 505 CONECT 520 505 CONECT 521 505 CONECT 522 506 CONECT 523 506 CONECT 524 506 CONECT 525 507 CONECT 2767 2777 CONECT 2777 2767 2778 2788 CONECT 2778 2777 2779 2786 2789 CONECT 2779 2778 2780 2790 2791 CONECT 2780 2779 2781 2792 2793 CONECT 2781 2780 2782 2794 2795 CONECT 2782 2781 2783 2796 2797 CONECT 2783 2782 2784 2785 CONECT 2784 2783 2798 2799 2800 CONECT 2785 2783 2801 2802 2803 CONECT 2786 2778 2787 2804 2805 CONECT 2787 2786 CONECT 2788 2777 CONECT 2789 2778 CONECT 2790 2779 CONECT 2791 2779 CONECT 2792 2780 CONECT 2793 2780 CONECT 2794 2781 CONECT 2795 2781 CONECT 2796 2782 CONECT 2797 2782 CONECT 2798 2784 CONECT 2799 2784 CONECT 2800 2784 CONECT 2801 2785 CONECT 2802 2785 CONECT 2803 2785 CONECT 2804 2786 CONECT 2805 2786 CONECT 2875 2885 CONECT 2885 2875 2886 2896 CONECT 2886 2885 2887 2894 2897 CONECT 2887 2886 2888 2898 2899 CONECT 2888 2887 2889 2900 2901 CONECT 2889 2888 2890 2902 2903 CONECT 2890 2889 2891 2904 2905 CONECT 2891 2890 2892 2893 CONECT 2892 2891 2906 2907 2908 CONECT 2893 2891 2909 2910 2911 CONECT 2894 2886 2895 2912 CONECT 2895 2894 CONECT 2896 2885 CONECT 2897 2886 CONECT 2898 2887 CONECT 2899 2887 CONECT 2900 2888 CONECT 2901 2888 CONECT 2902 2889 CONECT 2903 2889 CONECT 2904 2890 CONECT 2905 2890 CONECT 2906 2892 CONECT 2907 2892 CONECT 2908 2892 CONECT 2909 2893 CONECT 2910 2893 CONECT 2911 2893 CONECT 2912 2894 MASTER 323 0 5 9 7 0 0 6 1608 1 136 14 END