HEADER CHAPERONE 20-NOV-20 7KRU TITLE STIMULATING STATE OF A TRUNCATED HSP70 DNAK FUSED WITH A SUBSTRATE TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK FUSED WITH SUBSTRATE PEPTIDE; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: TRUNCATED (2-540); COMPND 5 SYNONYM: HSP70,HEAT SHOCK 70 KDA PROTEIN,HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), ESCHERICHIA COLI SOURCE 3 K-12; SOURCE 4 ORGANISM_TAXID: 83333; SOURCE 5 STRAIN: K12; SOURCE 6 GENE: DNAK, FAZ83_07380; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MOLECULAR CHAPERONE, HSP70, PROTEIN FOLDING, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,W.A.HENDRICKSON REVDAT 3 18-OCT-23 7KRU 1 REMARK REVDAT 2 20-OCT-21 7KRU 1 JRNL REVDAT 1 15-SEP-21 7KRU 0 JRNL AUTH W.WANG,Q.LIU,Q.LIU,W.A.HENDRICKSON JRNL TITL CONFORMATIONAL EQUILIBRIA IN ALLOSTERIC CONTROL OF HSP70 JRNL TITL 2 CHAPERONES. JRNL REF MOL.CELL V. 81 3919 2021 JRNL REFN ISSN 1097-2765 JRNL PMID 34453889 JRNL DOI 10.1016/J.MOLCEL.2021.07.039 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 99938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8600 - 4.2800 1.00 8161 151 0.1702 0.1917 REMARK 3 2 4.2800 - 3.4000 1.00 7742 143 0.1499 0.1538 REMARK 3 3 3.4000 - 2.9700 1.00 7637 141 0.1661 0.1950 REMARK 3 4 2.9700 - 2.7000 1.00 7584 139 0.1782 0.2293 REMARK 3 5 2.7000 - 2.5000 1.00 7527 140 0.1738 0.2193 REMARK 3 6 2.5000 - 2.3600 1.00 7484 138 0.1730 0.2154 REMARK 3 7 2.3500 - 2.2400 1.00 7458 137 0.1761 0.2351 REMARK 3 8 2.2400 - 2.1400 1.00 7455 138 0.1883 0.2243 REMARK 3 9 2.1400 - 2.0600 1.00 7446 138 0.2078 0.2556 REMARK 3 10 2.0600 - 1.9900 1.00 7451 137 0.2233 0.2937 REMARK 3 11 1.9900 - 1.9200 1.00 7438 137 0.2410 0.2784 REMARK 3 12 1.9200 - 1.8700 1.00 7405 137 0.2809 0.3496 REMARK 3 13 1.8700 - 1.8200 1.00 7338 136 0.3306 0.3414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8481 REMARK 3 ANGLE : 0.836 11493 REMARK 3 CHIRALITY : 0.208 1338 REMARK 3 PLANARITY : 0.005 1507 REMARK 3 DIHEDRAL : 18.004 3232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 169 OR REMARK 3 RESID 171 THROUGH 229 OR RESID 231 REMARK 3 THROUGH 233 OR RESID 236 THROUGH 503 OR REMARK 3 RESID 505 THROUGH 514 OR RESID 516 REMARK 3 THROUGH 517 OR RESID 519 THROUGH 552 OR REMARK 3 RESID 553 THROUGH 555)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 169 OR REMARK 3 RESID 171 THROUGH 229 OR RESID 231 REMARK 3 THROUGH 233 OR RESID 236 THROUGH 503 OR REMARK 3 RESID 505 THROUGH 514 OR RESID 516 REMARK 3 THROUGH 517 OR RESID 519 THROUGH 533 OR REMARK 3 RESID 547 THROUGH 552 OR RESID 553 REMARK 3 THROUGH 555)) REMARK 3 ATOM PAIRS NUMBER : 5018 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 48.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 32.60 REMARK 200 R MERGE (I) : 0.25900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 32.50 REMARK 200 R MERGE FOR SHELL (I) : 4.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JNE,1DKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M HEPES PH 7.5, 25.5% PEG 4000, REMARK 280 15% GLYCEROL, 0.17 M AMMONIUM SULFATE, 0.1M KCL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 256.50000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.25000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 192.37500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 320.62500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 256.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 128.25000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.12500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 192.37500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 320.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASN B 537 REMARK 465 GLN B 538 REMARK 465 GLY B 539 REMARK 465 ASP B 540 REMARK 465 THR B 541 REMARK 465 THR B 542 REMARK 465 GLY B 543 REMARK 465 SER B 544 REMARK 465 GLY B 545 REMARK 465 ASN B 546 REMARK 465 MET A 1 REMARK 465 GLN A 534 REMARK 465 THR A 535 REMARK 465 ARG A 536 REMARK 465 ASN A 537 REMARK 465 GLN A 538 REMARK 465 GLY A 539 REMARK 465 ASP A 540 REMARK 465 THR A 541 REMARK 465 THR A 542 REMARK 465 GLY A 543 REMARK 465 SER A 544 REMARK 465 GLY A 545 REMARK 465 ASN A 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 188 OD2 ASP B 336 1.54 REMARK 500 HE22 GLN B 260 O HOH B 701 1.55 REMARK 500 HG1 THR B 141 O HOH B 704 1.58 REMARK 500 O HOH A 1046 O HOH A 1067 2.01 REMARK 500 O HOH A 791 O HOH A 1024 2.06 REMARK 500 O HOH A 978 O HOH A 1016 2.12 REMARK 500 O ILE A 271 O HOH A 701 2.14 REMARK 500 O HOH B 902 O HOH B 929 2.16 REMARK 500 O HOH A 764 O HOH A 1037 2.17 REMARK 500 O HOH A 902 O HOH A 1042 2.17 REMARK 500 OD2 ASP A 518 O HOH A 702 2.18 REMARK 500 NE2 GLN B 260 O HOH B 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 871 O HOH A 916 6544 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 609 O1G REMARK 620 2 ATP B 609 O1B 86.7 REMARK 620 3 HOH B 738 O 90.7 177.4 REMARK 620 4 HOH B 767 O 176.3 90.1 92.4 REMARK 620 5 HOH B 882 O 93.1 91.9 87.7 88.9 REMARK 620 6 HOH B 942 O 89.5 88.3 92.2 88.5 177.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 607 O1B REMARK 620 2 ATP A 607 O2G 88.1 REMARK 620 3 HOH A 734 O 177.7 90.1 REMARK 620 4 HOH A 813 O 89.4 177.4 92.4 REMARK 620 5 HOH A 865 O 91.6 91.3 87.1 88.3 REMARK 620 6 HOH A 889 O 91.6 92.1 89.9 88.4 175.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KRT RELATED DB: PDB DBREF1 7KRU B 1 540 UNP A0A6D2W465_ECOLI DBREF2 7KRU B A0A6D2W465 1 540 DBREF 7KRU B 541 552 PDB 7KRU 7KRU 541 552 DBREF1 7KRU A 1 540 UNP A0A6D2W465_ECOLI DBREF2 7KRU A A0A6D2W465 1 540 DBREF 7KRU A 541 552 PDB 7KRU 7KRU 541 552 SEQADV 7KRU ALA B 199 UNP A0A6D2W46 THR 199 ENGINEERED MUTATION SEQADV 7KRU ALA A 199 UNP A0A6D2W46 THR 199 ENGINEERED MUTATION SEQRES 1 B 552 MET GLY LYS ILE ILE GLY ILE ASP LEU GLY THR THR ASN SEQRES 2 B 552 SER CYS VAL ALA ILE MET ASP GLY THR THR PRO ARG VAL SEQRES 3 B 552 LEU GLU ASN ALA GLU GLY ASP ARG THR THR PRO SER ILE SEQRES 4 B 552 ILE ALA TYR THR GLN ASP GLY GLU THR LEU VAL GLY GLN SEQRES 5 B 552 PRO ALA LYS ARG GLN ALA VAL THR ASN PRO GLN ASN THR SEQRES 6 B 552 LEU PHE ALA ILE LYS ARG LEU ILE GLY ARG ARG PHE GLN SEQRES 7 B 552 ASP GLU GLU VAL GLN ARG ASP VAL SER ILE MET PRO PHE SEQRES 8 B 552 LYS ILE ILE ALA ALA ASP ASN GLY ASP ALA TRP VAL GLU SEQRES 9 B 552 VAL LYS GLY GLN LYS MET ALA PRO PRO GLN ILE SER ALA SEQRES 10 B 552 GLU VAL LEU LYS LYS MET LYS LYS THR ALA GLU ASP TYR SEQRES 11 B 552 LEU GLY GLU PRO VAL THR GLU ALA VAL ILE THR VAL PRO SEQRES 12 B 552 ALA TYR PHE ASN ASP ALA GLN ARG GLN ALA THR LYS ASP SEQRES 13 B 552 ALA GLY ARG ILE ALA GLY LEU GLU VAL LYS ARG ILE ILE SEQRES 14 B 552 ASN GLU PRO THR ALA ALA ALA LEU ALA TYR GLY LEU ASP SEQRES 15 B 552 LYS GLY THR GLY ASN ARG THR ILE ALA VAL TYR ASP LEU SEQRES 16 B 552 GLY GLY GLY ALA PHE ASP ILE SER ILE ILE GLU ILE ASP SEQRES 17 B 552 GLU VAL ASP GLY GLU LYS THR PHE GLU VAL LEU ALA THR SEQRES 18 B 552 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SER SEQRES 19 B 552 ARG LEU ILE ASN TYR LEU VAL GLU GLU PHE LYS LYS ASP SEQRES 20 B 552 GLN GLY ILE ASP LEU ARG ASN ASP PRO LEU ALA MET GLN SEQRES 21 B 552 ARG LEU LYS GLU ALA ALA GLU LYS ALA LYS ILE GLU LEU SEQRES 22 B 552 SER SER ALA GLN GLN THR ASP VAL ASN LEU PRO TYR ILE SEQRES 23 B 552 THR ALA ASP ALA THR GLY PRO LYS HIS MET ASN ILE LYS SEQRES 24 B 552 VAL THR ARG ALA LYS LEU GLU SER LEU VAL GLU ASP LEU SEQRES 25 B 552 VAL ASN ARG SER ILE GLU PRO LEU LYS VAL ALA LEU GLN SEQRES 26 B 552 ASP ALA GLY LEU SER VAL SER ASP ILE ASP ASP VAL ILE SEQRES 27 B 552 LEU VAL GLY GLY GLN THR ARG MET PRO MET VAL GLN LYS SEQRES 28 B 552 LYS VAL ALA GLU PHE PHE GLY LYS GLU PRO ARG LYS ASP SEQRES 29 B 552 VAL ASN PRO ASP GLU ALA VAL ALA ILE GLY ALA ALA VAL SEQRES 30 B 552 GLN GLY GLY VAL LEU THR GLY ASP VAL LYS ASP VAL LEU SEQRES 31 B 552 LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR SEQRES 32 B 552 MET GLY GLY VAL MET THR THR LEU ILE ALA LYS ASN THR SEQRES 33 B 552 THR ILE PRO THR LYS HIS SER GLN VAL PHE SER THR ALA SEQRES 34 B 552 GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN SEQRES 35 B 552 GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY SEQRES 36 B 552 GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY SEQRES 37 B 552 MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP SEQRES 38 B 552 GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY SEQRES 39 B 552 LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU SEQRES 40 B 552 ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU SEQRES 41 B 552 ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL SEQRES 42 B 552 GLN THR ARG ASN GLN GLY ASP THR THR GLY SER GLY ASN SEQRES 43 B 552 ARG LEU LEU LEU THR GLY SEQRES 1 A 552 MET GLY LYS ILE ILE GLY ILE ASP LEU GLY THR THR ASN SEQRES 2 A 552 SER CYS VAL ALA ILE MET ASP GLY THR THR PRO ARG VAL SEQRES 3 A 552 LEU GLU ASN ALA GLU GLY ASP ARG THR THR PRO SER ILE SEQRES 4 A 552 ILE ALA TYR THR GLN ASP GLY GLU THR LEU VAL GLY GLN SEQRES 5 A 552 PRO ALA LYS ARG GLN ALA VAL THR ASN PRO GLN ASN THR SEQRES 6 A 552 LEU PHE ALA ILE LYS ARG LEU ILE GLY ARG ARG PHE GLN SEQRES 7 A 552 ASP GLU GLU VAL GLN ARG ASP VAL SER ILE MET PRO PHE SEQRES 8 A 552 LYS ILE ILE ALA ALA ASP ASN GLY ASP ALA TRP VAL GLU SEQRES 9 A 552 VAL LYS GLY GLN LYS MET ALA PRO PRO GLN ILE SER ALA SEQRES 10 A 552 GLU VAL LEU LYS LYS MET LYS LYS THR ALA GLU ASP TYR SEQRES 11 A 552 LEU GLY GLU PRO VAL THR GLU ALA VAL ILE THR VAL PRO SEQRES 12 A 552 ALA TYR PHE ASN ASP ALA GLN ARG GLN ALA THR LYS ASP SEQRES 13 A 552 ALA GLY ARG ILE ALA GLY LEU GLU VAL LYS ARG ILE ILE SEQRES 14 A 552 ASN GLU PRO THR ALA ALA ALA LEU ALA TYR GLY LEU ASP SEQRES 15 A 552 LYS GLY THR GLY ASN ARG THR ILE ALA VAL TYR ASP LEU SEQRES 16 A 552 GLY GLY GLY ALA PHE ASP ILE SER ILE ILE GLU ILE ASP SEQRES 17 A 552 GLU VAL ASP GLY GLU LYS THR PHE GLU VAL LEU ALA THR SEQRES 18 A 552 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SER SEQRES 19 A 552 ARG LEU ILE ASN TYR LEU VAL GLU GLU PHE LYS LYS ASP SEQRES 20 A 552 GLN GLY ILE ASP LEU ARG ASN ASP PRO LEU ALA MET GLN SEQRES 21 A 552 ARG LEU LYS GLU ALA ALA GLU LYS ALA LYS ILE GLU LEU SEQRES 22 A 552 SER SER ALA GLN GLN THR ASP VAL ASN LEU PRO TYR ILE SEQRES 23 A 552 THR ALA ASP ALA THR GLY PRO LYS HIS MET ASN ILE LYS SEQRES 24 A 552 VAL THR ARG ALA LYS LEU GLU SER LEU VAL GLU ASP LEU SEQRES 25 A 552 VAL ASN ARG SER ILE GLU PRO LEU LYS VAL ALA LEU GLN SEQRES 26 A 552 ASP ALA GLY LEU SER VAL SER ASP ILE ASP ASP VAL ILE SEQRES 27 A 552 LEU VAL GLY GLY GLN THR ARG MET PRO MET VAL GLN LYS SEQRES 28 A 552 LYS VAL ALA GLU PHE PHE GLY LYS GLU PRO ARG LYS ASP SEQRES 29 A 552 VAL ASN PRO ASP GLU ALA VAL ALA ILE GLY ALA ALA VAL SEQRES 30 A 552 GLN GLY GLY VAL LEU THR GLY ASP VAL LYS ASP VAL LEU SEQRES 31 A 552 LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR SEQRES 32 A 552 MET GLY GLY VAL MET THR THR LEU ILE ALA LYS ASN THR SEQRES 33 A 552 THR ILE PRO THR LYS HIS SER GLN VAL PHE SER THR ALA SEQRES 34 A 552 GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN SEQRES 35 A 552 GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY SEQRES 36 A 552 GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY SEQRES 37 A 552 MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP SEQRES 38 A 552 GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY SEQRES 39 A 552 LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU SEQRES 40 A 552 ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU SEQRES 41 A 552 ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL SEQRES 42 A 552 GLN THR ARG ASN GLN GLY ASP THR THR GLY SER GLY ASN SEQRES 43 A 552 ARG LEU LEU LEU THR GLY HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 606 5 HET PDO B 607 13 HET MG B 608 1 HET ATP B 609 43 HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET PDO A 604 13 HET GOL A 605 14 HET MG A 606 1 HET ATP A 607 43 HETNAM SO4 SULFATE ION HETNAM PDO 1,3-PROPANDIOL HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 9(O4 S 2-) FORMUL 9 PDO 2(C3 H8 O2) FORMUL 10 MG 2(MG 2+) FORMUL 11 ATP 2(C10 H16 N5 O13 P3) FORMUL 16 GOL C3 H8 O3 FORMUL 19 HOH *745(H2 O) HELIX 1 AA1 GLY B 51 GLN B 57 1 7 HELIX 2 AA2 ALA B 58 GLN B 63 5 6 HELIX 3 AA3 ILE B 69 LEU B 72 5 4 HELIX 4 AA4 ASP B 79 MET B 89 1 11 HELIX 5 AA5 ALA B 111 GLY B 132 1 22 HELIX 6 AA6 ASN B 147 ALA B 161 1 15 HELIX 7 AA7 GLU B 171 GLY B 180 1 10 HELIX 8 AA8 GLY B 228 GLY B 249 1 22 HELIX 9 AA9 ASP B 251 ASN B 254 5 4 HELIX 10 AB1 ASP B 255 LEU B 273 1 19 HELIX 11 AB2 ARG B 302 SER B 316 1 15 HELIX 12 AB3 SER B 316 GLY B 328 1 13 HELIX 13 AB4 SER B 330 ILE B 334 5 5 HELIX 14 AB5 GLY B 341 ARG B 345 5 5 HELIX 15 AB6 MET B 346 GLY B 358 1 13 HELIX 16 AB7 GLU B 369 THR B 383 1 15 HELIX 17 AB8 ARG B 447 ASN B 451 5 5 HELIX 18 AB9 ASN B 508 ASN B 522 1 15 HELIX 19 AC1 ASN B 522 THR B 535 1 14 HELIX 20 AC2 GLY A 51 ALA A 58 1 8 HELIX 21 AC3 VAL A 59 GLN A 63 5 5 HELIX 22 AC4 ILE A 69 LEU A 72 5 4 HELIX 23 AC5 ASP A 79 MET A 89 1 11 HELIX 24 AC6 ALA A 111 GLY A 132 1 22 HELIX 25 AC7 ASN A 147 ALA A 161 1 15 HELIX 26 AC8 GLU A 171 GLY A 180 1 10 HELIX 27 AC9 GLY A 228 GLY A 249 1 22 HELIX 28 AD1 ASP A 251 ASN A 254 5 4 HELIX 29 AD2 ASP A 255 LEU A 273 1 19 HELIX 30 AD3 ARG A 302 ARG A 315 1 14 HELIX 31 AD4 SER A 316 GLY A 328 1 13 HELIX 32 AD5 SER A 330 ILE A 334 5 5 HELIX 33 AD6 GLY A 341 ARG A 345 5 5 HELIX 34 AD7 MET A 346 GLY A 358 1 13 HELIX 35 AD8 GLU A 369 THR A 383 1 15 HELIX 36 AD9 ARG A 447 ASN A 451 5 5 HELIX 37 AE1 ASN A 508 ASN A 522 1 15 HELIX 38 AE2 ASN A 522 VAL A 533 1 12 SHEET 1 AA1 3 THR B 23 VAL B 26 0 SHEET 2 AA1 3 ASN B 13 ASP B 20 -1 N ILE B 18 O ARG B 25 SHEET 3 AA1 3 THR B 36 PRO B 37 -1 O THR B 36 N SER B 14 SHEET 1 AA2 5 THR B 23 VAL B 26 0 SHEET 2 AA2 5 ASN B 13 ASP B 20 -1 N ILE B 18 O ARG B 25 SHEET 3 AA2 5 ILE B 4 ASP B 8 -1 N GLY B 6 O ALA B 17 SHEET 4 AA2 5 GLU B 137 VAL B 142 1 O VAL B 139 N ILE B 7 SHEET 5 AA2 5 GLU B 164 ASN B 170 1 O GLU B 164 N ALA B 138 SHEET 1 AA3 3 THR B 48 VAL B 50 0 SHEET 2 AA3 3 ILE B 39 TYR B 42 -1 N ALA B 41 O LEU B 49 SHEET 3 AA3 3 THR B 65 PHE B 67 -1 O LEU B 66 N ILE B 40 SHEET 1 AA4 3 LYS B 92 ALA B 95 0 SHEET 2 AA4 3 ALA B 101 VAL B 105 -1 O TRP B 102 N ILE B 94 SHEET 3 AA4 3 GLN B 108 MET B 110 -1 O MET B 110 N VAL B 103 SHEET 1 AA5 5 ASP B 336 VAL B 340 0 SHEET 2 AA5 5 ARG B 188 LEU B 195 1 N ALA B 191 O ILE B 338 SHEET 3 AA5 5 PHE B 200 VAL B 210 -1 O SER B 203 N VAL B 192 SHEET 4 AA5 5 GLU B 213 ASP B 224 -1 O LEU B 219 N ILE B 204 SHEET 5 AA5 5 VAL B 389 LEU B 391 1 O LEU B 390 N LYS B 214 SHEET 1 AA6 2 GLN B 278 ASP B 289 0 SHEET 2 AA6 2 GLY B 292 THR B 301 -1 O ILE B 298 N VAL B 281 SHEET 1 AA7 4 VAL B 407 ILE B 412 0 SHEET 2 AA7 4 LEU B 399 THR B 403 -1 N ILE B 401 O THR B 409 SHEET 3 AA7 4 VAL B 436 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 AA7 4 LYS B 452 LEU B 459 -1 O PHE B 457 N ILE B 438 SHEET 1 AA8 5 GLU B 496 ILE B 501 0 SHEET 2 AA8 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 AA8 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 AA8 5 THR B 420 THR B 428 -1 N HIS B 422 O PHE B 476 SHEET 5 AA8 5 LEU B 549 LEU B 550 1 O LEU B 550 N SER B 427 SHEET 1 AA9 3 THR A 23 VAL A 26 0 SHEET 2 AA9 3 ASN A 13 ASP A 20 -1 N ILE A 18 O ARG A 25 SHEET 3 AA9 3 THR A 36 PRO A 37 -1 O THR A 36 N SER A 14 SHEET 1 AB1 5 THR A 23 VAL A 26 0 SHEET 2 AB1 5 ASN A 13 ASP A 20 -1 N ILE A 18 O ARG A 25 SHEET 3 AB1 5 ILE A 4 LEU A 9 -1 N GLY A 6 O ALA A 17 SHEET 4 AB1 5 GLU A 137 VAL A 142 1 O VAL A 139 N ILE A 7 SHEET 5 AB1 5 GLU A 164 ASN A 170 1 O GLU A 164 N ALA A 138 SHEET 1 AB2 3 THR A 48 VAL A 50 0 SHEET 2 AB2 3 ILE A 39 TYR A 42 -1 N ALA A 41 O LEU A 49 SHEET 3 AB2 3 THR A 65 PHE A 67 -1 O LEU A 66 N ILE A 40 SHEET 1 AB3 3 LYS A 92 ALA A 95 0 SHEET 2 AB3 3 ALA A 101 VAL A 105 -1 O TRP A 102 N ILE A 94 SHEET 3 AB3 3 GLN A 108 MET A 110 -1 O MET A 110 N VAL A 103 SHEET 1 AB4 5 ASP A 336 VAL A 340 0 SHEET 2 AB4 5 ARG A 188 LEU A 195 1 N ALA A 191 O ILE A 338 SHEET 3 AB4 5 PHE A 200 VAL A 210 -1 O ILE A 207 N ARG A 188 SHEET 4 AB4 5 GLU A 213 ASP A 224 -1 O LEU A 219 N ILE A 204 SHEET 5 AB4 5 VAL A 389 LEU A 391 1 O LEU A 390 N LYS A 214 SHEET 1 AB5 2 GLN A 278 ASP A 289 0 SHEET 2 AB5 2 GLY A 292 THR A 301 -1 O ILE A 298 N VAL A 281 SHEET 1 AB6 4 VAL A 407 ILE A 412 0 SHEET 2 AB6 4 LEU A 399 THR A 403 -1 N ILE A 401 O THR A 409 SHEET 3 AB6 4 ALA A 435 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 AB6 4 LYS A 452 ASP A 460 -1 O PHE A 457 N ILE A 438 SHEET 1 AB7 5 GLU A 496 ILE A 501 0 SHEET 2 AB7 5 LEU A 484 ASP A 490 -1 N ALA A 488 O GLN A 497 SHEET 3 AB7 5 ILE A 472 ILE A 478 -1 N ASP A 477 O HIS A 485 SHEET 4 AB7 5 THR A 420 THR A 428 -1 N PHE A 426 O ILE A 472 SHEET 5 AB7 5 LEU A 549 LEU A 550 1 O LEU A 550 N SER A 427 LINK MG MG B 608 O1G ATP B 609 1555 1555 2.06 LINK MG MG B 608 O1B ATP B 609 1555 1555 2.14 LINK MG MG B 608 O HOH B 738 1555 1555 2.14 LINK MG MG B 608 O HOH B 767 1555 1555 2.15 LINK MG MG B 608 O HOH B 882 1555 1555 2.12 LINK MG MG B 608 O HOH B 942 1555 1555 2.08 LINK MG MG A 606 O1B ATP A 607 1555 1555 2.09 LINK MG MG A 606 O2G ATP A 607 1555 1555 2.02 LINK MG MG A 606 O HOH A 734 1555 1555 2.15 LINK MG MG A 606 O HOH A 813 1555 1555 2.08 LINK MG MG A 606 O HOH A 865 1555 1555 2.12 LINK MG MG A 606 O HOH A 889 1555 1555 2.09 CISPEP 1 ILE B 418 PRO B 419 0 0.18 CISPEP 2 ILE A 418 PRO A 419 0 4.39 CRYST1 98.516 98.516 384.750 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010151 0.005860 0.000000 0.00000 SCALE2 0.000000 0.011721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002599 0.00000