HEADER DNA BINDING PROTEIN/DNA 23-NOV-20 7KSP TITLE CRYSTAL STRUCTURE OF HSAMD9_DBD WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SAM DOMAIN-CONTAINING PROTEIN 9; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAMD9, C7ORF5, DRIF1, KIAA2004, OEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS SAMD9, ALBA DOMAIN, DNA BINDING, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.PENG,P.PATHAK,Y.XIANG,J.DENG REVDAT 4 22-MAY-24 7KSP 1 REMARK REVDAT 3 27-APR-22 7KSP 1 JRNL REVDAT 2 12-JAN-22 7KSP 1 TITLE REVDAT 1 05-JAN-22 7KSP 0 JRNL AUTH S.PENG,X.MENG,F.ZHANG,P.K.PATHAK,J.CHATURVEDI,J.CORONADO, JRNL AUTH 2 M.MORALES,Y.MAO,S.B.QIAN,J.DENG,Y.XIANG JRNL TITL STRUCTURE AND FUNCTION OF AN EFFECTOR DOMAIN IN ANTIVIRAL JRNL TITL 2 FACTORS AND TUMOR SUPPRESSORS SAMD9 AND SAMD9L. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35046037 JRNL DOI 10.1073/PNAS.2116550119 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 15989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 6.2273 0.97 1436 159 0.1918 0.2606 REMARK 3 2 6.2273 - 4.9443 0.98 1392 155 0.1994 0.2771 REMARK 3 3 4.9443 - 4.3197 0.99 1421 158 0.1637 0.2286 REMARK 3 4 4.3197 - 3.9250 0.96 1354 150 0.1777 0.2593 REMARK 3 5 3.9250 - 3.6437 0.99 1407 156 0.2063 0.3044 REMARK 3 6 3.6437 - 3.4290 0.99 1378 154 0.2183 0.3176 REMARK 3 7 3.4290 - 3.2573 0.96 1365 150 0.2621 0.3242 REMARK 3 8 3.2573 - 3.1155 0.95 1308 148 0.2641 0.3346 REMARK 3 9 3.1155 - 2.9956 0.90 1272 141 0.2815 0.3824 REMARK 3 10 2.9956 - 2.8922 0.80 1124 125 0.2863 0.3503 REMARK 3 11 2.8922 - 2.8012 0.67 935 101 0.3221 0.3378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4584 REMARK 3 ANGLE : 1.218 6351 REMARK 3 CHIRALITY : 0.065 686 REMARK 3 PLANARITY : 0.009 661 REMARK 3 DIHEDRAL : 20.861 2591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1780 11.2371 80.7779 REMARK 3 T TENSOR REMARK 3 T11: 0.7335 T22: 0.5985 REMARK 3 T33: 0.7554 T12: -0.1316 REMARK 3 T13: 0.1984 T23: -0.4640 REMARK 3 L TENSOR REMARK 3 L11: 3.9308 L22: 9.1694 REMARK 3 L33: 3.1562 L12: -5.7355 REMARK 3 L13: 0.2615 L23: 1.2232 REMARK 3 S TENSOR REMARK 3 S11: -0.3862 S12: -1.4623 S13: 1.1415 REMARK 3 S21: 1.3080 S22: 0.1761 S23: -0.4897 REMARK 3 S31: -0.2020 S32: 0.4004 S33: 0.1446 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6980 9.2340 68.6033 REMARK 3 T TENSOR REMARK 3 T11: 0.5535 T22: 0.6727 REMARK 3 T33: 1.3335 T12: -0.0298 REMARK 3 T13: 0.0111 T23: 0.4943 REMARK 3 L TENSOR REMARK 3 L11: 0.3154 L22: 5.3860 REMARK 3 L33: 1.4665 L12: -0.3531 REMARK 3 L13: -0.7108 L23: 0.7575 REMARK 3 S TENSOR REMARK 3 S11: -0.4120 S12: 0.6698 S13: 2.0852 REMARK 3 S21: -0.0854 S22: 0.3893 S23: -1.0477 REMARK 3 S31: -0.5943 S32: -0.1674 S33: 0.2165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7178 3.6272 61.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.7057 REMARK 3 T33: 0.6277 T12: -0.0123 REMARK 3 T13: 0.2371 T23: 0.2339 REMARK 3 L TENSOR REMARK 3 L11: 3.6119 L22: 6.1284 REMARK 3 L33: 3.6819 L12: -1.6037 REMARK 3 L13: 0.9713 L23: -1.3323 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: 1.0080 S13: 0.8726 REMARK 3 S21: -0.5921 S22: -0.2974 S23: 0.1204 REMARK 3 S31: -0.2925 S32: 0.2873 S33: -0.0592 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9040 10.6953 69.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.2598 T22: 0.5799 REMARK 3 T33: 1.2093 T12: -0.0012 REMARK 3 T13: 0.0725 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 2.7070 L22: 0.9720 REMARK 3 L33: 3.1834 L12: 1.6069 REMARK 3 L13: -0.1685 L23: -0.3409 REMARK 3 S TENSOR REMARK 3 S11: 0.2484 S12: 0.8464 S13: 1.7387 REMARK 3 S21: 0.1780 S22: -0.0889 S23: -0.7346 REMARK 3 S31: -0.2633 S32: 0.4991 S33: -0.0307 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1742 3.9454 70.3266 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.5420 REMARK 3 T33: 0.7775 T12: 0.0758 REMARK 3 T13: 0.0633 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 3.8673 L22: 2.3985 REMARK 3 L33: 4.1918 L12: -0.8593 REMARK 3 L13: 0.4276 L23: -0.1363 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.0473 S13: 0.6297 REMARK 3 S21: 0.3833 S22: -0.0627 S23: 0.3516 REMARK 3 S31: -0.2643 S32: -0.4094 S33: 0.2202 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0011 -6.2834 59.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.7101 REMARK 3 T33: 0.6408 T12: 0.1243 REMARK 3 T13: 0.2525 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 4.7638 L22: 4.3720 REMARK 3 L33: 6.7188 L12: 0.3853 REMARK 3 L13: 0.4288 L23: -0.1417 REMARK 3 S TENSOR REMARK 3 S11: -0.1075 S12: 0.7489 S13: 0.3301 REMARK 3 S21: -0.5376 S22: 0.0221 S23: -0.0383 REMARK 3 S31: 0.3327 S32: -0.3260 S33: -0.0085 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4375 -2.0524 56.7749 REMARK 3 T TENSOR REMARK 3 T11: 0.4788 T22: 1.0980 REMARK 3 T33: 0.6433 T12: 0.2069 REMARK 3 T13: 0.2203 T23: 0.2245 REMARK 3 L TENSOR REMARK 3 L11: 3.6561 L22: 8.7320 REMARK 3 L33: 6.2162 L12: 1.4249 REMARK 3 L13: 2.7076 L23: 1.2617 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: 0.5528 S13: 0.1939 REMARK 3 S21: -0.7401 S22: -0.1288 S23: -1.4115 REMARK 3 S31: -0.3130 S32: 2.0851 S33: -0.3349 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8638 -12.2313 54.1701 REMARK 3 T TENSOR REMARK 3 T11: 0.4702 T22: 1.4705 REMARK 3 T33: 0.8344 T12: 0.6730 REMARK 3 T13: 0.9376 T23: -0.1806 REMARK 3 L TENSOR REMARK 3 L11: 0.9074 L22: 0.7137 REMARK 3 L33: 1.4679 L12: 0.1392 REMARK 3 L13: -0.7685 L23: 0.6321 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: 0.6556 S13: 0.2229 REMARK 3 S21: -0.3001 S22: 0.2664 S23: -0.5099 REMARK 3 S31: -0.0363 S32: 0.5956 S33: -0.0938 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9682 -14.1320 73.0703 REMARK 3 T TENSOR REMARK 3 T11: 0.6459 T22: 0.7587 REMARK 3 T33: 0.8184 T12: 0.0963 REMARK 3 T13: -0.2628 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.1577 L22: 9.5966 REMARK 3 L33: 2.0618 L12: -1.3406 REMARK 3 L13: -0.6672 L23: -0.7468 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: -0.8419 S13: 0.3824 REMARK 3 S21: 1.9632 S22: 0.3745 S23: -1.8062 REMARK 3 S31: 0.9465 S32: 1.5254 S33: -0.6751 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7415 8.5388 5.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.5409 T22: 0.6840 REMARK 3 T33: 0.6297 T12: 0.0294 REMARK 3 T13: -0.0068 T23: -0.1550 REMARK 3 L TENSOR REMARK 3 L11: 7.5920 L22: 2.6281 REMARK 3 L33: 7.3930 L12: -1.8341 REMARK 3 L13: -3.8193 L23: 1.8166 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: 1.2297 S13: -1.3873 REMARK 3 S21: -1.0314 S22: -0.0355 S23: -0.2736 REMARK 3 S31: 0.7683 S32: -0.0123 S33: 0.1780 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1598 9.9197 11.4464 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.7902 REMARK 3 T33: 1.3123 T12: 0.1071 REMARK 3 T13: 0.1393 T23: -0.1576 REMARK 3 L TENSOR REMARK 3 L11: 0.2651 L22: 2.7824 REMARK 3 L33: 4.4864 L12: 0.4972 REMARK 3 L13: 1.0534 L23: 1.1554 REMARK 3 S TENSOR REMARK 3 S11: -0.8171 S12: 0.5331 S13: -1.2445 REMARK 3 S21: 0.0436 S22: 0.7024 S23: -1.1413 REMARK 3 S31: -0.0542 S32: 1.0657 S33: -0.4921 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4975 12.9807 22.3335 REMARK 3 T TENSOR REMARK 3 T11: 0.3021 T22: 0.4952 REMARK 3 T33: 0.5500 T12: 0.0511 REMARK 3 T13: 0.0489 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 5.6352 L22: 5.0933 REMARK 3 L33: 7.0841 L12: 1.5326 REMARK 3 L13: -1.1534 L23: 0.2211 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: -1.1605 S13: -1.4287 REMARK 3 S21: 0.0915 S22: -0.2559 S23: -0.3360 REMARK 3 S31: 0.7084 S32: 0.4307 S33: 0.4079 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6433 7.9885 16.9256 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.5074 REMARK 3 T33: 0.7525 T12: 0.0215 REMARK 3 T13: 0.0657 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.4133 L22: 7.3481 REMARK 3 L33: 4.7316 L12: 0.7785 REMARK 3 L13: -1.8963 L23: 1.1567 REMARK 3 S TENSOR REMARK 3 S11: -0.2815 S12: -0.4733 S13: -1.2520 REMARK 3 S21: 0.3412 S22: 0.0083 S23: -1.3647 REMARK 3 S31: 0.7490 S32: 0.4815 S33: 0.1527 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3114 14.7997 19.6517 REMARK 3 T TENSOR REMARK 3 T11: 0.3209 T22: 0.5868 REMARK 3 T33: 0.7253 T12: -0.0804 REMARK 3 T13: -0.0639 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 7.4458 L22: 2.1020 REMARK 3 L33: 7.1366 L12: 1.0320 REMARK 3 L13: -0.1373 L23: 1.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: -0.0477 S13: -1.1551 REMARK 3 S21: 0.1520 S22: -0.3172 S23: 0.5876 REMARK 3 S31: 0.6477 S32: -0.9161 S33: 0.2139 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4571 16.4018 15.1332 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.5940 REMARK 3 T33: 0.5968 T12: -0.0522 REMARK 3 T13: -0.0162 T23: -0.1180 REMARK 3 L TENSOR REMARK 3 L11: 4.2047 L22: 3.1293 REMARK 3 L33: 5.3678 L12: -3.6170 REMARK 3 L13: -1.8683 L23: 1.7587 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.2120 S13: -0.6757 REMARK 3 S21: -0.2736 S22: -0.8109 S23: 1.3589 REMARK 3 S31: 0.2358 S32: -0.6922 S33: 0.5600 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8146 26.1135 26.7136 REMARK 3 T TENSOR REMARK 3 T11: 0.3774 T22: 0.9575 REMARK 3 T33: 0.4594 T12: -0.0728 REMARK 3 T13: 0.0116 T23: -0.1218 REMARK 3 L TENSOR REMARK 3 L11: 3.0610 L22: 6.3506 REMARK 3 L33: 4.7944 L12: -0.8494 REMARK 3 L13: 0.0136 L23: 0.6428 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -1.1592 S13: 0.4384 REMARK 3 S21: 0.4058 S22: -0.0285 S23: -0.4303 REMARK 3 S31: 0.4194 S32: 0.4719 S33: 0.1688 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3080 25.4073 55.3679 REMARK 3 T TENSOR REMARK 3 T11: 1.9471 T22: 0.9384 REMARK 3 T33: 1.1591 T12: -0.0611 REMARK 3 T13: 0.2910 T23: -0.3918 REMARK 3 L TENSOR REMARK 3 L11: 9.2479 L22: 3.1863 REMARK 3 L33: 6.2739 L12: 1.9819 REMARK 3 L13: 4.0647 L23: -2.7076 REMARK 3 S TENSOR REMARK 3 S11: 1.7196 S12: 0.3295 S13: -0.6195 REMARK 3 S21: 0.6497 S22: -0.6311 S23: -1.8018 REMARK 3 S31: 1.7178 S32: -2.0987 S33: -0.4633 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1203 -3.5653 34.3631 REMARK 3 T TENSOR REMARK 3 T11: 1.5124 T22: 1.1303 REMARK 3 T33: 1.6343 T12: -0.1904 REMARK 3 T13: 0.4448 T23: -0.5538 REMARK 3 L TENSOR REMARK 3 L11: 2.3346 L22: 8.9328 REMARK 3 L33: 7.5418 L12: -2.2314 REMARK 3 L13: -0.9079 L23: 5.9346 REMARK 3 S TENSOR REMARK 3 S11: 0.8504 S12: 0.9111 S13: -0.8737 REMARK 3 S21: -0.6217 S22: -1.0507 S23: -0.7129 REMARK 3 S31: -0.6314 S32: -1.1693 S33: 0.2111 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6441 -6.5035 33.4594 REMARK 3 T TENSOR REMARK 3 T11: 2.3535 T22: 1.0701 REMARK 3 T33: 1.1762 T12: -0.2034 REMARK 3 T13: 0.0060 T23: -0.4699 REMARK 3 L TENSOR REMARK 3 L11: 7.0748 L22: 4.3965 REMARK 3 L33: 3.8142 L12: -3.2036 REMARK 3 L13: -3.8990 L23: 1.4292 REMARK 3 S TENSOR REMARK 3 S11: 1.0904 S12: 0.3196 S13: 0.2747 REMARK 3 S21: -0.1253 S22: 0.5751 S23: -2.3625 REMARK 3 S31: -1.0396 S32: -0.7225 S33: -1.4431 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5850 11.6872 50.1593 REMARK 3 T TENSOR REMARK 3 T11: 2.0338 T22: 0.6176 REMARK 3 T33: 1.1762 T12: -0.0712 REMARK 3 T13: -0.1688 T23: -0.1243 REMARK 3 L TENSOR REMARK 3 L11: 5.9459 L22: 6.7986 REMARK 3 L33: 5.5825 L12: 3.7176 REMARK 3 L13: 1.1126 L23: 1.2495 REMARK 3 S TENSOR REMARK 3 S11: 0.5365 S12: -0.9839 S13: 0.6293 REMARK 3 S21: 1.1987 S22: -0.6986 S23: -0.6154 REMARK 3 S31: 1.5409 S32: -0.7818 S33: 0.0068 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1639 28.9248 53.4646 REMARK 3 T TENSOR REMARK 3 T11: 1.5182 T22: 0.7199 REMARK 3 T33: 0.8233 T12: 0.1766 REMARK 3 T13: -0.1859 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 8.0552 L22: 3.6537 REMARK 3 L33: 5.1725 L12: 1.5869 REMARK 3 L13: -6.1041 L23: -2.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.9302 S12: -0.1016 S13: 1.8231 REMARK 3 S21: 0.2053 S22: 0.9331 S23: -2.2144 REMARK 3 S31: 1.0545 S32: -0.2509 S33: -1.9141 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 21 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1922 32.6740 67.3321 REMARK 3 T TENSOR REMARK 3 T11: 1.3951 T22: 0.9118 REMARK 3 T33: 1.9090 T12: -0.0079 REMARK 3 T13: 0.0412 T23: -0.5759 REMARK 3 L TENSOR REMARK 3 L11: 3.8186 L22: 2.3517 REMARK 3 L33: 6.1089 L12: 2.9130 REMARK 3 L13: 2.7756 L23: 1.3830 REMARK 3 S TENSOR REMARK 3 S11: 1.4774 S12: -1.0480 S13: 1.6529 REMARK 3 S21: 0.6269 S22: 0.1468 S23: -1.7031 REMARK 3 S31: 0.2201 S32: 0.8233 S33: -1.7941 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 160:172 OR (RESID REMARK 3 173 AND (NAME O OR NAME N OR NAME CA OR REMARK 3 NAME C OR NAME CB OR NAME CG OR NAME CD1 REMARK 3 OR NAME CD2 OR NAME CE1 OR NAME CE2 OR REMARK 3 NAME CZ )) OR RESSEQ 174:176 OR (RESID REMARK 3 177 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CD2)) OR RESSEQ 178 OR (RESID 179 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CD2 OR NAME CE1 OR NAME CE2)) OR RESSEQ REMARK 3 180:181 OR (RESID 187 AND (NAME O OR NAME REMARK 3 N OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG )) OR RESSEQ 188:202 OR (RESID 206 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME CB )) REMARK 3 OR (RESID 207 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME CB OR NAME OG1 OR NAME CG2) REMARK 3 ) OR RESSEQ 209:240 OR (RESID 241 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME CG OR NAME OD1)) OR REMARK 3 RESSEQ 243:258 OR (RESID 259 AND (NAME O REMARK 3 OR NAME N OR NAME CA OR NAME C )) OR REMARK 3 RESSEQ 260:294 OR RESSEQ 300:328 OR REMARK 3 RESSEQ 332:355 OR RESSEQ 357:359 OR REMARK 3 RESSEQ 361:366 OR RESSEQ 368:373 OR REMARK 3 RESSEQ 375:377 OR (RESID 378 AND (NAME O REMARK 3 OR NAME N OR NAME CA OR NAME C OR NAME CB REMARK 3 OR NAME CG OR NAME CD OR NAME OE1)))) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 160:172 OR (RESID REMARK 3 173 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CD2 OR NAME CE1 OR NAME CE2 OR NAME CZ OR REMARK 3 NAME OH )) OR RESSEQ 174:176 OR (RESID REMARK 3 177 AND (NAME O OR NAME N OR NAME CA OR REMARK 3 NAME C OR NAME CB OR NAME CG OR NAME CD1)) REMARK 3 OR RESSEQ 178 OR (RESID 179 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CD2 OR NAME CE1 OR REMARK 3 NAME CE2 OR NAME CZ )) OR RESSEQ 180:181 REMARK 3 OR (RESID 187 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME CB OR NAME CG OR NAME CD )) REMARK 3 OR RESSEQ 188:202 OR (RESID 204 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C )) REMARK 3 OR (RESID 207 AND (NAME O OR NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB OR NAME OG1)) REMARK 3 OR RESSEQ 209:240 OR (RESID 241 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME CB REMARK 3 OR NAME CG OR NAME OD1 OR NAME OD2)) OR REMARK 3 RESSEQ 243:258 OR (RESID 259 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB )) OR REMARK 3 RESSEQ 260:294 OR RESSEQ 300:328 OR REMARK 3 RESSEQ 332:355 OR RESSEQ 357:359 OR REMARK 3 RESSEQ 361:366 OR RESSEQ 368:373 OR REMARK 3 RESSEQ 375:377 OR (RESID 378 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME OE1 OR NAME OE2)))) REMARK 3 ATOM PAIRS NUMBER : 1824 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97887 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 20MM MAGNESIUM REMARK 280 CHLORIDE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.51100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 156 REMARK 465 ILE A 157 REMARK 465 ASP A 158 REMARK 465 GLU A 184 REMARK 465 THR A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 242 REMARK 465 ASN A 296 REMARK 465 SER A 297 REMARK 465 THR A 298 REMARK 465 ASN A 329 REMARK 465 ASN A 330 REMARK 465 LYS A 331 REMARK 465 ARG A 381 REMARK 465 ALA A 382 REMARK 465 LYS A 383 REMARK 465 THR A 384 REMARK 465 ASN A 385 REMARK 465 SER B 156 REMARK 465 ILE B 157 REMARK 465 ASP B 158 REMARK 465 THR B 205 REMARK 465 ALA B 206 REMARK 465 PRO B 295 REMARK 465 ASN B 296 REMARK 465 SER B 297 REMARK 465 THR B 298 REMARK 465 LEU B 299 REMARK 465 ASN B 329 REMARK 465 ASN B 330 REMARK 465 LYS B 331 REMARK 465 ARG B 381 REMARK 465 ALA B 382 REMARK 465 LYS B 383 REMARK 465 THR B 384 REMARK 465 ASN B 385 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 159 CD1 CD2 REMARK 480 GLU A 168 OE1 OE2 REMARK 480 PHE A 169 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS A 176 CE NZ REMARK 480 LEU A 177 CD1 CD2 REMARK 480 LEU A 181 CB CG CD1 CD2 REMARK 480 GLN A 182 CB CG CD OE1 NE2 REMARK 480 ALA A 199 CB REMARK 480 THR A 203 OG1 CG2 REMARK 480 LYS A 214 CD CE NZ REMARK 480 LYS A 240 CD CE NZ REMARK 480 LYS A 246 CD CE NZ REMARK 480 LYS A 251 CG CD CE NZ REMARK 480 LYS A 257 CE NZ REMARK 480 GLU A 258 CG CD OE1 OE2 REMARK 480 LYS A 270 NZ REMARK 480 LYS A 282 CD CE NZ REMARK 480 LEU A 294 CB CG CD1 CD2 REMARK 480 LEU A 299 CG CD1 CD2 REMARK 480 GLN A 312 OE1 NE2 REMARK 480 ILE A 332 CD1 REMARK 480 GLU A 334 OE1 OE2 REMARK 480 LYS A 337 CG CD CE NZ REMARK 480 LYS A 338 CD CE NZ REMARK 480 LYS A 350 CD CE NZ REMARK 480 LYS A 354 CG CD CE NZ REMARK 480 LYS A 356 CD CE NZ REMARK 480 LYS A 363 CD CE NZ REMARK 480 ASP A 365 CB CG OD1 OD2 REMARK 480 LYS A 367 CD CE NZ REMARK 480 LYS A 374 CD CE NZ REMARK 480 GLU A 378 CD OE1 OE2 REMARK 480 LYS A 379 CD CE NZ REMARK 480 LEU B 159 CG CD1 CD2 REMARK 480 PHE B 169 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ASP B 178 CG OD1 OD2 REMARK 480 SER B 180 OG REMARK 480 GLN B 182 CG CD OE1 NE2 REMARK 480 GLU B 184 CG CD OE1 OE2 REMARK 480 THR B 203 CB OG1 CG2 REMARK 480 GLU B 208 CG CD OE1 OE2 REMARK 480 LYS B 214 CG CD CE NZ REMARK 480 LYS B 240 NZ REMARK 480 ASP B 241 CG OD1 OD2 REMARK 480 LYS B 242 CG CD CE NZ REMARK 480 LYS B 246 CG CD CE NZ REMARK 480 LYS B 251 CG CD CE NZ REMARK 480 GLU B 258 CG CD OE1 OE2 REMARK 480 LEU B 294 CG CD1 CD2 REMARK 480 LYS B 324 CD CE NZ REMARK 480 TYR B 328 CZ OH REMARK 480 GLU B 334 CG CD OE1 OE2 REMARK 480 LYS B 337 CD CE NZ REMARK 480 LYS B 338 CD CE NZ REMARK 480 LYS B 350 CG CD CE NZ REMARK 480 LYS B 354 CD CE NZ REMARK 480 LYS B 356 CG CD CE NZ REMARK 480 VAL B 357 CG1 CG2 REMARK 480 ARG B 360 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 363 CG CD CE NZ REMARK 480 ASP B 365 CG OD1 OD2 REMARK 480 LYS B 367 CG CD CE NZ REMARK 480 LYS B 374 CD CE NZ REMARK 480 LYS B 379 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 DT C 14 N6 DA D 9 1.19 REMARK 500 O4 DT C 10 N6 DA D 13 1.39 REMARK 500 C4 DT C 10 N6 DA D 13 1.75 REMARK 500 O4 DT C 10 C6 DA D 13 1.89 REMARK 500 N3 DT C 10 N6 DA D 13 1.89 REMARK 500 O4 DT C 7 N6 DA D 16 1.89 REMARK 500 CD1 LEU B 177 O LEU B 293 1.91 REMARK 500 O4 DT C 17 N6 DA D 6 2.00 REMARK 500 O4 DT C 15 N6 DA D 8 2.02 REMARK 500 O LEU A 369 OG SER A 372 2.03 REMARK 500 N6 DA C 20 O4 DT D 3 2.03 REMARK 500 NH2 ARG B 288 OD1 ASP B 308 2.10 REMARK 500 O4 DT C 6 N6 DA D 17 2.11 REMARK 500 O4 DT C 10 C5 DA D 13 2.11 REMARK 500 O4 DT C 18 N6 DA D 5 2.12 REMARK 500 N4 DC C 2 N7 DG D 21 2.13 REMARK 500 N6 DA C 5 O4 DT D 18 2.13 REMARK 500 O4 DT C 10 N7 DA D 13 2.15 REMARK 500 N6 DA C 8 O4 DT D 15 2.16 REMARK 500 C4 DT C 14 N6 DA D 9 2.16 REMARK 500 OD1 ASN A 217 OH TYR A 271 2.17 REMARK 500 CG PRO A 165 ND2 ASN A 171 2.17 REMARK 500 O4 DT C 13 N6 DA D 10 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 3 O3' DA C 3 C3' -0.042 REMARK 500 DT D 19 O3' DT D 19 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 2 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C 3 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 4 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA C 9 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 12 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA C 16 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC C 19 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 20 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 7 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DT D 7 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 10 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 11 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 190 -10.48 64.88 REMARK 500 PHE A 200 53.82 -95.29 REMARK 500 ALA A 204 -19.25 75.71 REMARK 500 GLN A 317 -86.72 -93.87 REMARK 500 ASP A 345 -75.08 -85.18 REMARK 500 ASP A 365 0.40 -60.93 REMARK 500 THR B 185 -166.59 -104.87 REMARK 500 ASP B 301 -23.73 80.08 REMARK 500 GLN B 317 -82.83 -99.78 REMARK 500 ASP B 345 -74.13 -90.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 7KSP A 156 385 UNP Q5K651 SAMD9_HUMAN 156 385 DBREF 7KSP B 156 385 UNP Q5K651 SAMD9_HUMAN 156 385 DBREF 7KSP C 1 22 PDB 7KSP 7KSP 1 22 DBREF 7KSP D 1 22 PDB 7KSP 7KSP 1 22 SEQRES 1 A 230 SER ILE ASP LEU THR CYS VAL SER TYR PRO PHE ASP GLU SEQRES 2 A 230 PHE SER ASN PRO TYR ARG TYR LYS LEU ASP PHE SER LEU SEQRES 3 A 230 GLN PRO GLU THR GLY PRO GLY ASN LEU ILE ASP PRO ILE SEQRES 4 A 230 HIS GLU PHE LYS ALA PHE THR ASN THR ALA THR ALA THR SEQRES 5 A 230 GLU GLU ASP VAL LYS MET LYS PHE SER ASN GLU VAL PHE SEQRES 6 A 230 ARG PHE ALA SER ALA CYS MET ASN SER ARG THR ASN GLY SEQRES 7 A 230 THR ILE HIS PHE GLY VAL LYS ASP LYS PRO HIS GLY LYS SEQRES 8 A 230 ILE VAL GLY ILE LYS VAL THR ASN ASP THR LYS GLU ALA SEQRES 9 A 230 LEU ILE ASN HIS PHE ASN LEU MET ILE ASN LYS TYR PHE SEQRES 10 A 230 GLU ASP HIS GLN VAL GLN GLN ALA LYS LYS CYS ILE ARG SEQRES 11 A 230 GLU PRO ARG PHE VAL GLU VAL LEU LEU PRO ASN SER THR SEQRES 12 A 230 LEU SER ASP ARG PHE VAL ILE GLU VAL ASP ILE ILE PRO SEQRES 13 A 230 GLN PHE SER GLU CYS GLN TYR ASP TYR PHE GLN ILE LYS SEQRES 14 A 230 MET GLN ASN TYR ASN ASN LYS ILE TRP GLU GLN SER LYS SEQRES 15 A 230 LYS PHE SER LEU PHE VAL ARG ASP GLY THR SER SER LYS SEQRES 16 A 230 ASP ILE THR LYS ASN LYS VAL ASP PHE ARG ALA PHE LYS SEQRES 17 A 230 ALA ASP PHE LYS THR LEU ALA GLU SER ARG LYS ALA ALA SEQRES 18 A 230 GLU GLU LYS PHE ARG ALA LYS THR ASN SEQRES 1 B 230 SER ILE ASP LEU THR CYS VAL SER TYR PRO PHE ASP GLU SEQRES 2 B 230 PHE SER ASN PRO TYR ARG TYR LYS LEU ASP PHE SER LEU SEQRES 3 B 230 GLN PRO GLU THR GLY PRO GLY ASN LEU ILE ASP PRO ILE SEQRES 4 B 230 HIS GLU PHE LYS ALA PHE THR ASN THR ALA THR ALA THR SEQRES 5 B 230 GLU GLU ASP VAL LYS MET LYS PHE SER ASN GLU VAL PHE SEQRES 6 B 230 ARG PHE ALA SER ALA CYS MET ASN SER ARG THR ASN GLY SEQRES 7 B 230 THR ILE HIS PHE GLY VAL LYS ASP LYS PRO HIS GLY LYS SEQRES 8 B 230 ILE VAL GLY ILE LYS VAL THR ASN ASP THR LYS GLU ALA SEQRES 9 B 230 LEU ILE ASN HIS PHE ASN LEU MET ILE ASN LYS TYR PHE SEQRES 10 B 230 GLU ASP HIS GLN VAL GLN GLN ALA LYS LYS CYS ILE ARG SEQRES 11 B 230 GLU PRO ARG PHE VAL GLU VAL LEU LEU PRO ASN SER THR SEQRES 12 B 230 LEU SER ASP ARG PHE VAL ILE GLU VAL ASP ILE ILE PRO SEQRES 13 B 230 GLN PHE SER GLU CYS GLN TYR ASP TYR PHE GLN ILE LYS SEQRES 14 B 230 MET GLN ASN TYR ASN ASN LYS ILE TRP GLU GLN SER LYS SEQRES 15 B 230 LYS PHE SER LEU PHE VAL ARG ASP GLY THR SER SER LYS SEQRES 16 B 230 ASP ILE THR LYS ASN LYS VAL ASP PHE ARG ALA PHE LYS SEQRES 17 B 230 ALA ASP PHE LYS THR LEU ALA GLU SER ARG LYS ALA ALA SEQRES 18 B 230 GLU GLU LYS PHE ARG ALA LYS THR ASN SEQRES 1 C 22 DG DC DA DA DA DT DT DA DA DT DG DA DT SEQRES 2 C 22 DT DT DA DT DT DC DA DA DG SEQRES 1 D 22 DC DT DT DG DA DA DT DA DA DA DT DC DA SEQRES 2 D 22 DT DT DA DA DT DT DT DG DC FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 THR A 207 ARG A 230 1 24 HELIX 2 AA2 THR A 253 PHE A 272 1 20 HELIX 3 AA3 GLU A 273 ILE A 284 1 12 HELIX 4 AA4 VAL A 357 ASP A 365 1 9 HELIX 5 AA5 ASP A 365 PHE A 380 1 16 HELIX 6 AA6 GLU B 208 SER B 229 1 22 HELIX 7 AA7 THR B 253 PHE B 272 1 20 HELIX 8 AA8 GLU B 273 ILE B 284 1 12 HELIX 9 AA9 ASN B 355 PHE B 380 1 26 SHEET 1 AA1 2 THR A 160 CYS A 161 0 SHEET 2 AA1 2 SER A 180 LEU A 181 1 O SER A 180 N CYS A 161 SHEET 1 AA2 5 TYR A 175 LYS A 176 0 SHEET 2 AA2 5 ARG A 288 LEU A 293 1 O LEU A 293 N TYR A 175 SHEET 3 AA2 5 ARG A 302 ILE A 309 -1 O GLU A 306 N ARG A 288 SHEET 4 AA2 5 GLY A 233 HIS A 236 -1 N ILE A 235 O VAL A 307 SHEET 5 AA2 5 ILE A 194 PHE A 197 1 N GLU A 196 O HIS A 236 SHEET 1 AA3 4 TYR A 175 LYS A 176 0 SHEET 2 AA3 4 ARG A 288 LEU A 293 1 O LEU A 293 N TYR A 175 SHEET 3 AA3 4 ARG A 302 ILE A 309 -1 O GLU A 306 N ARG A 288 SHEET 4 AA3 4 ILE A 250 LYS A 251 -1 N ILE A 250 O PHE A 303 SHEET 1 AA4 2 VAL A 239 LYS A 240 0 SHEET 2 AA4 2 LYS A 246 ILE A 247 -1 O LYS A 246 N LYS A 240 SHEET 1 AA5 2 GLN A 326 ASN A 327 0 SHEET 2 AA5 2 GLU A 334 GLN A 335 -1 O GLU A 334 N ASN A 327 SHEET 1 AA6 2 PHE A 342 ARG A 344 0 SHEET 2 AA6 2 SER A 349 ASP A 351 -1 O LYS A 350 N VAL A 343 SHEET 1 AA7 2 THR B 160 CYS B 161 0 SHEET 2 AA7 2 SER B 180 LEU B 181 1 O SER B 180 N CYS B 161 SHEET 1 AA8 4 ILE B 194 PHE B 197 0 SHEET 2 AA8 4 GLY B 233 HIS B 236 1 O HIS B 236 N GLU B 196 SHEET 3 AA8 4 ARG B 302 ILE B 309 -1 O VAL B 307 N ILE B 235 SHEET 4 AA8 4 ILE B 250 LYS B 251 -1 N ILE B 250 O PHE B 303 SHEET 1 AA9 4 ILE B 194 PHE B 197 0 SHEET 2 AA9 4 GLY B 233 HIS B 236 1 O HIS B 236 N GLU B 196 SHEET 3 AA9 4 ARG B 302 ILE B 309 -1 O VAL B 307 N ILE B 235 SHEET 4 AA9 4 ARG B 288 VAL B 292 -1 N ARG B 288 O GLU B 306 SHEET 1 AB1 2 GLN B 326 ASN B 327 0 SHEET 2 AB1 2 GLU B 334 GLN B 335 -1 O GLU B 334 N ASN B 327 SHEET 1 AB2 2 PHE B 342 ARG B 344 0 SHEET 2 AB2 2 SER B 349 ASP B 351 -1 O LYS B 350 N VAL B 343 CRYST1 67.796 59.022 88.383 90.00 97.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014750 0.000000 0.001934 0.00000 SCALE2 0.000000 0.016943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011411 0.00000