HEADER REPLICATION/DNA 24-NOV-20 7KSZ TITLE DNA POLYMERASE MU, DGTP:AT PRE-CATALYTIC GROUND STATE TERNARY COMPLEX, TITLE 2 10 MM CA2+ (960MIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED DNA/RNA POLYMERASE MU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL MU,TERMINAL TRANSFERASE; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3'); COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*CP*GP*TP*A)-3'); COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLM, POLMU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEXM; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, OXIDIZED NUCLEOTIDE INSERTION, DNA KEYWDS 2 POLYMERASE MU, DOUBLE STRAND BREAK REPAIR, REPLICATION, REPLICATION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7KSZ 1 REMARK REVDAT 1 19-JAN-22 7KSZ 0 JRNL AUTH J.A.JAMSEN,A.SASSA,D.D.SHOCK,W.A.BEARD,S.H.WILSON JRNL TITL WATCHING A DOUBLE STRAND BREAK REPAIR POLYMERASE INSERT A JRNL TITL 2 PRO-MUTAGENIC OXIDIZED NUCLEOTIDE. JRNL REF NAT COMMUN V. 12 2059 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33824325 JRNL DOI 10.1038/S41467-021-21354-6 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 86453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8260 - 4.4005 0.99 2945 157 0.1846 0.2194 REMARK 3 2 4.4005 - 3.4940 0.99 2807 148 0.1443 0.1376 REMARK 3 3 3.4940 - 3.0527 1.00 2804 147 0.1465 0.1650 REMARK 3 4 3.0527 - 2.7738 1.00 2790 146 0.1562 0.1653 REMARK 3 5 2.7738 - 2.5751 1.00 2795 149 0.1526 0.1641 REMARK 3 6 2.5751 - 2.4233 1.00 2754 144 0.1439 0.1655 REMARK 3 7 2.4233 - 2.3020 1.00 2746 143 0.1399 0.1518 REMARK 3 8 2.3020 - 2.2018 0.99 2736 148 0.1395 0.1515 REMARK 3 9 2.2018 - 2.1170 1.00 2744 142 0.1429 0.1688 REMARK 3 10 2.1170 - 2.0440 1.00 2754 147 0.1499 0.1575 REMARK 3 11 2.0440 - 1.9801 1.00 2732 149 0.1520 0.1853 REMARK 3 12 1.9801 - 1.9235 1.00 2741 142 0.1526 0.1824 REMARK 3 13 1.9235 - 1.8729 1.00 2747 142 0.1505 0.1597 REMARK 3 14 1.8729 - 1.8272 1.00 2726 143 0.1492 0.1586 REMARK 3 15 1.8272 - 1.7856 1.00 2724 144 0.1489 0.1671 REMARK 3 16 1.7856 - 1.7476 1.00 2738 144 0.1505 0.1887 REMARK 3 17 1.7476 - 1.7127 1.00 2721 143 0.1497 0.1606 REMARK 3 18 1.7127 - 1.6804 1.00 2723 144 0.1532 0.1810 REMARK 3 19 1.6804 - 1.6504 1.00 2732 143 0.1482 0.1652 REMARK 3 20 1.6504 - 1.6224 1.00 2692 142 0.1589 0.1863 REMARK 3 21 1.6224 - 1.5962 1.00 2737 144 0.1639 0.1876 REMARK 3 22 1.5962 - 1.5717 1.00 2689 142 0.1721 0.2058 REMARK 3 23 1.5717 - 1.5485 1.00 2719 144 0.1747 0.2106 REMARK 3 24 1.5485 - 1.5267 1.00 2727 143 0.1917 0.2189 REMARK 3 25 1.5267 - 1.5061 1.00 2725 143 0.1926 0.2381 REMARK 3 26 1.5061 - 1.4865 1.00 2697 142 0.2035 0.2378 REMARK 3 27 1.4865 - 1.4680 1.00 2699 142 0.2140 0.2343 REMARK 3 28 1.4680 - 1.4503 1.00 2743 146 0.2238 0.2446 REMARK 3 29 1.4503 - 1.4334 1.00 2685 141 0.2386 0.2744 REMARK 3 30 1.4334 - 1.4173 0.93 2553 134 0.2845 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3261 REMARK 3 ANGLE : 1.197 4525 REMARK 3 CHIRALITY : 0.080 492 REMARK 3 PLANARITY : 0.009 528 REMARK 3 DIHEDRAL : 17.371 1231 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 138 THROUGH 228) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1423 -18.8786 -14.3572 REMARK 3 T TENSOR REMARK 3 T11: 0.1524 T22: 0.1477 REMARK 3 T33: 0.1372 T12: 0.0365 REMARK 3 T13: -0.0012 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.7292 L22: 0.7559 REMARK 3 L33: 0.9522 L12: -0.1447 REMARK 3 L13: 0.2043 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.1355 S13: -0.1332 REMARK 3 S21: -0.1036 S22: -0.0443 S23: -0.0861 REMARK 3 S31: 0.1588 S32: 0.1772 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 229 THROUGH 287) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9138 7.1341 -17.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.1911 REMARK 3 T33: 0.2098 T12: -0.0105 REMARK 3 T13: 0.0499 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.3225 L22: 0.3065 REMARK 3 L33: 0.5588 L12: 0.0130 REMARK 3 L13: 0.0802 L23: 0.3418 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.1191 S13: 0.1359 REMARK 3 S21: -0.1994 S22: -0.0001 S23: -0.2936 REMARK 3 S31: -0.1767 S32: 0.1446 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 288 THROUGH 494) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4982 0.8477 -4.9824 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0782 REMARK 3 T33: 0.0648 T12: 0.0027 REMARK 3 T13: 0.0031 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.2052 L22: 1.4051 REMARK 3 L33: 0.6124 L12: -0.0401 REMARK 3 L13: -0.1480 L23: 0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.0257 S13: 0.0853 REMARK 3 S21: 0.0424 S22: -0.0118 S23: -0.0015 REMARK 3 S31: -0.0210 S32: -0.0298 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3828 -15.3189 -31.1424 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2600 REMARK 3 T33: 0.1322 T12: 0.0360 REMARK 3 T13: -0.0058 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.1448 L22: 0.1012 REMARK 3 L33: 0.0240 L12: 0.1211 REMARK 3 L13: 0.0589 L23: 0.0492 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.2884 S13: -0.0707 REMARK 3 S21: -0.6464 S22: -0.1085 S23: -0.0697 REMARK 3 S31: 0.0247 S32: -0.2771 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 9) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0481 1.1254 -18.6964 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.2029 REMARK 3 T33: 0.1236 T12: 0.0023 REMARK 3 T13: -0.0137 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0084 L22: 0.2108 REMARK 3 L33: 0.0223 L12: -0.0165 REMARK 3 L13: -0.0117 L23: 0.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: 0.1518 S13: 0.0350 REMARK 3 S21: -0.0859 S22: -0.0902 S23: 0.1289 REMARK 3 S31: -0.0321 S32: -0.0222 S33: -0.0030 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1555 5.4359 -17.9192 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1826 REMARK 3 T33: 0.1173 T12: -0.0217 REMARK 3 T13: -0.0032 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.0377 L22: 0.0395 REMARK 3 L33: 0.0299 L12: 0.0038 REMARK 3 L13: 0.0183 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.1704 S12: -0.1121 S13: -0.0515 REMARK 3 S21: 0.1402 S22: -0.0179 S23: 0.1284 REMARK 3 S31: 0.2633 S32: 0.0058 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2205 -21.8199 -25.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.2519 REMARK 3 T33: 0.1144 T12: 0.0033 REMARK 3 T13: -0.0203 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 0.0820 L22: 0.4996 REMARK 3 L33: 0.2518 L12: 0.0235 REMARK 3 L13: -0.0225 L23: -0.3544 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.1155 S13: -0.0423 REMARK 3 S21: -0.1889 S22: 0.0039 S23: 0.0317 REMARK 3 S31: 0.2352 S32: -0.1666 S33: 0.1439 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.417 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4M04 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 85-90MM HEPES PH 7.5, 17-18% PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.87650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.06650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.38900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.06650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.87650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.38900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 ALA A 130 REMARK 465 ALA A 131 REMARK 465 PRO A 132 REMARK 465 LEU A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 ALA A 136 REMARK 465 TRP A 137 REMARK 465 HIS A 365 REMARK 465 GLN A 366 REMARK 465 HIS A 367 REMARK 465 SER A 368 REMARK 465 CYS A 369 REMARK 465 CYS A 370 REMARK 465 GLU A 371 REMARK 465 SER A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 ARG A 375 REMARK 465 LEU A 376 REMARK 465 ALA A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 SER A 380 REMARK 465 HIS A 381 REMARK 465 MET A 382 REMARK 465 ASP A 383 REMARK 465 ALA A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 175 CZ NH1 NH2 REMARK 470 LEU A 196 CD1 CD2 REMARK 470 GLN A 200 CD OE1 NE2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 GLN A 214 OE1 NE2 REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 GLU A 223 CD OE1 OE2 REMARK 470 LYS A 249 NZ REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 GLN A 270 CG CD OE1 NE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 GLN A 300 CD OE1 NE2 REMARK 470 GLU A 304 CD OE1 OE2 REMARK 470 LYS A 339 CD CE NZ REMARK 470 GLN A 357 OE1 NE2 REMARK 470 GLN A 364 O OE1 NE2 REMARK 470 GLU A 465 CD OE1 OE2 REMARK 470 LYS A 467 CE NZ REMARK 470 GLN A 471 CD OE1 NE2 REMARK 470 GLU A 485 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT T 6 O3' DT T 6 C3' -0.042 REMARK 500 DT P 3 O3' DT P 3 C3' -0.076 REMARK 500 DG D 1 P DG D 1 OP3 -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 416 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC T 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT T 6 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA T 7 O5' - P - OP2 ANGL. DEV. = -8.6 DEGREES REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 310 94.49 -161.80 REMARK 500 THR A 318 -150.43 -119.84 REMARK 500 THR A 318 -152.06 -125.82 REMARK 500 SER A 411 -141.31 -167.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 947 DISTANCE = 5.81 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EDO A 504 REMARK 610 EDO A 505 REMARK 610 EPE A 509 REMARK 610 EDO T 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 241 O REMARK 620 2 ILE A 243 O 95.8 REMARK 620 3 VAL A 246 O 88.3 91.2 REMARK 620 4 HOH A 645 O 95.7 94.1 173.0 REMARK 620 5 DT P 3 OP1 172.4 91.5 89.4 86.0 REMARK 620 6 HOH P 212 O 88.0 174.4 84.7 89.7 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 330 O REMARK 620 2 ASP A 330 OD1 67.2 REMARK 620 3 ASP A 332 OD2 93.4 86.8 REMARK 620 4 DGT A 511 O2A 140.3 73.4 88.5 REMARK 620 5 DGT A 511 O2B 139.8 152.4 95.1 79.2 REMARK 620 6 DGT A 511 O1G 86.0 97.4 175.1 95.2 82.4 REMARK 620 7 HOH A 731 O 65.1 131.2 86.0 154.3 76.3 89.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 330 OD1 REMARK 620 2 ASP A 330 OD2 51.1 REMARK 620 3 ASP A 332 OD1 78.2 116.8 REMARK 620 4 ASP A 418 OD2 114.7 83.0 88.3 REMARK 620 5 DGT A 511 O2A 69.3 101.7 90.2 175.3 REMARK 620 6 DA P 4 O3' 157.2 145.6 95.6 86.7 89.0 REMARK 620 7 HOH P 204 O 105.1 70.6 171.5 97.3 83.8 78.3 REMARK 620 N 1 2 3 4 5 6 DBREF 7KSZ A 127 494 UNP Q9NP87 DPOLM_HUMAN 127 494 DBREF 7KSZ T 1 9 PDB 7KSZ 7KSZ 1 9 DBREF 7KSZ P 1 4 PDB 7KSZ 7KSZ 1 4 DBREF 7KSZ D 1 4 PDB 7KSZ 7KSZ 1 4 SEQADV 7KSZ SER A 128 UNP Q9NP87 PRO 128 CONFLICT SEQADV 7KSZ ALA A 129 UNP Q9NP87 ARG 129 CONFLICT SEQADV 7KSZ ALA A 130 UNP Q9NP87 LYS 130 CONFLICT SEQADV 7KSZ ALA A 131 UNP Q9NP87 GLY 131 CONFLICT SEQADV 7KSZ A UNP Q9NP87 PRO 398 DELETION SEQADV 7KSZ A UNP Q9NP87 GLY 399 DELETION SEQADV 7KSZ A UNP Q9NP87 ALA 400 DELETION SEQADV 7KSZ A UNP Q9NP87 ALA 401 DELETION SEQADV 7KSZ A UNP Q9NP87 VAL 402 DELETION SEQADV 7KSZ A UNP Q9NP87 GLY 403 DELETION SEQADV 7KSZ A UNP Q9NP87 GLY 404 DELETION SEQADV 7KSZ A UNP Q9NP87 SER 405 DELETION SEQADV 7KSZ A UNP Q9NP87 THR 406 DELETION SEQADV 7KSZ A UNP Q9NP87 ARG 407 DELETION SEQADV 7KSZ A UNP Q9NP87 PRO 408 DELETION SEQADV 7KSZ A UNP Q9NP87 CYS 409 DELETION SEQADV 7KSZ GLY A 410 UNP Q9NP87 PRO 410 CONFLICT SEQRES 1 A 356 GLY SER ALA ALA ALA PRO LEU SER PRO ALA TRP MET PRO SEQRES 2 A 356 ALA TYR ALA CYS GLN ARG PRO THR PRO LEU THR HIS HIS SEQRES 3 A 356 ASN THR GLY LEU SER GLU ALA LEU GLU ILE LEU ALA GLU SEQRES 4 A 356 ALA ALA GLY PHE GLU GLY SER GLU GLY ARG LEU LEU THR SEQRES 5 A 356 PHE CYS ARG ALA ALA SER VAL LEU LYS ALA LEU PRO SER SEQRES 6 A 356 PRO VAL THR THR LEU SER GLN LEU GLN GLY LEU PRO HIS SEQRES 7 A 356 PHE GLY GLU HIS SER SER ARG VAL VAL GLN GLU LEU LEU SEQRES 8 A 356 GLU HIS GLY VAL CYS GLU GLU VAL GLU ARG VAL ARG ARG SEQRES 9 A 356 SER GLU ARG TYR GLN THR MET LYS LEU PHE THR GLN ILE SEQRES 10 A 356 PHE GLY VAL GLY VAL LYS THR ALA ASP ARG TRP TYR ARG SEQRES 11 A 356 GLU GLY LEU ARG THR LEU ASP ASP LEU ARG GLU GLN PRO SEQRES 12 A 356 GLN LYS LEU THR GLN GLN GLN LYS ALA GLY LEU GLN HIS SEQRES 13 A 356 HIS GLN ASP LEU SER THR PRO VAL LEU ARG SER ASP VAL SEQRES 14 A 356 ASP ALA LEU GLN GLN VAL VAL GLU GLU ALA VAL GLY GLN SEQRES 15 A 356 ALA LEU PRO GLY ALA THR VAL THR LEU THR GLY GLY PHE SEQRES 16 A 356 ARG ARG GLY LYS LEU GLN GLY HIS ASP VAL ASP PHE LEU SEQRES 17 A 356 ILE THR HIS PRO LYS GLU GLY GLN GLU ALA GLY LEU LEU SEQRES 18 A 356 PRO ARG VAL MET CYS ARG LEU GLN ASP GLN GLY LEU ILE SEQRES 19 A 356 LEU TYR HIS GLN HIS GLN HIS SER CYS CYS GLU SER PRO SEQRES 20 A 356 THR ARG LEU ALA GLN GLN SER HIS MET ASP ALA PHE GLU SEQRES 21 A 356 ARG SER PHE CYS ILE PHE ARG LEU PRO GLN PRO GLY SER SEQRES 22 A 356 TRP LYS ALA VAL ARG VAL ASP LEU VAL VAL ALA PRO VAL SEQRES 23 A 356 SER GLN PHE PRO PHE ALA LEU LEU GLY TRP THR GLY SER SEQRES 24 A 356 LYS LEU PHE GLN ARG GLU LEU ARG ARG PHE SER ARG LYS SEQRES 25 A 356 GLU LYS GLY LEU TRP LEU ASN SER HIS GLY LEU PHE ASP SEQRES 26 A 356 PRO GLU GLN LYS THR PHE PHE GLN ALA ALA SER GLU GLU SEQRES 27 A 356 ASP ILE PHE ARG HIS LEU GLY LEU GLU TYR LEU PRO PRO SEQRES 28 A 356 GLU GLN ARG ASN ALA SEQRES 1 T 9 DC DG DG DC DA DT DA DC DG SEQRES 1 P 4 DC DG DT DA SEQRES 1 D 4 DG DC DC DG HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 3 HET EDO A 505 2 HET NA A 506 1 HET CA A 507 1 HET CA A 508 1 HET EPE A 509 4 HET DTT A 510 1 HET DGT A 511 31 HET EDO T 101 3 HET EDO P 101 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN EPE HEPES HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 5 EDO 7(C2 H6 O2) FORMUL 10 NA NA 1+ FORMUL 11 CA 2(CA 2+) FORMUL 13 EPE C8 H18 N2 O4 S FORMUL 14 DTT C4 H10 O2 S2 FORMUL 15 DGT C10 H16 N5 O13 P3 FORMUL 18 HOH *432(H2 O) HELIX 1 AA1 TYR A 141 ARG A 145 5 5 HELIX 2 AA2 ASN A 153 GLU A 170 1 18 HELIX 3 AA3 SER A 172 LEU A 189 1 18 HELIX 4 AA4 THR A 195 GLN A 200 5 6 HELIX 5 AA5 GLY A 206 GLY A 220 1 15 HELIX 6 AA6 CYS A 222 SER A 231 1 10 HELIX 7 AA7 SER A 231 GLN A 242 1 12 HELIX 8 AA8 GLY A 247 GLU A 257 1 11 HELIX 9 AA9 THR A 261 GLN A 268 1 8 HELIX 10 AB1 PRO A 269 LEU A 272 5 4 HELIX 11 AB2 THR A 273 HIS A 282 1 10 HELIX 12 AB3 HIS A 282 SER A 287 1 6 HELIX 13 AB4 ARG A 292 LEU A 310 1 19 HELIX 14 AB5 THR A 318 ARG A 323 1 6 HELIX 15 AB6 GLY A 345 GLN A 357 1 13 HELIX 16 AB7 PRO A 423 SER A 425 5 3 HELIX 17 AB8 GLN A 426 GLY A 436 1 11 HELIX 18 AB9 SER A 437 GLY A 453 1 17 HELIX 19 AC1 SER A 474 LEU A 482 1 9 HELIX 20 AC2 PRO A 488 ARG A 492 5 5 SHEET 1 AA1 2 VAL A 290 LEU A 291 0 SHEET 2 AA1 2 GLN A 327 GLY A 328 -1 O GLY A 328 N VAL A 290 SHEET 1 AA2 5 THR A 314 LEU A 317 0 SHEET 2 AA2 5 ASP A 330 THR A 336 -1 O LEU A 334 N THR A 316 SHEET 3 AA2 5 SER A 411 VAL A 421 1 O VAL A 420 N ILE A 335 SHEET 4 AA2 5 ARG A 387 GLN A 396 -1 N PHE A 392 O VAL A 415 SHEET 5 AA2 5 ILE A 360 TYR A 362 -1 N TYR A 362 O ILE A 391 SHEET 1 AA3 3 TRP A 455 ASN A 457 0 SHEET 2 AA3 3 GLY A 460 ASP A 463 -1 O PHE A 462 N TRP A 455 SHEET 3 AA3 3 THR A 468 PHE A 469 -1 O THR A 468 N ASP A 463 LINK SG ACYS A 180 S1 ADTT A 510 1555 1555 1.98 LINK O THR A 241 NA NA A 506 1555 1555 2.33 LINK O ILE A 243 NA NA A 506 1555 1555 2.38 LINK O VAL A 246 NA NA A 506 1555 1555 2.31 LINK O ASP A 330 CA CA A 507 1555 1555 2.74 LINK OD1 ASP A 330 CA CA A 507 1555 1555 2.24 LINK OD1 ASP A 330 CA CA A 508 1555 1555 2.64 LINK OD2 ASP A 330 CA CA A 508 1555 1555 2.33 LINK OD2 ASP A 332 CA CA A 507 1555 1555 2.32 LINK OD1 ASP A 332 CA CA A 508 1555 1555 2.32 LINK OD2 ASP A 418 CA CA A 508 1555 1555 2.28 LINK NA NA A 506 O HOH A 645 1555 1555 2.36 LINK NA NA A 506 OP1 DT P 3 1555 1555 2.57 LINK NA NA A 506 O HOH P 212 1555 1555 2.41 LINK CA CA A 507 O2A DGT A 511 1555 1555 2.51 LINK CA CA A 507 O2B DGT A 511 1555 1555 2.33 LINK CA CA A 507 O1G DGT A 511 1555 1555 2.30 LINK CA CA A 507 O HOH A 731 1555 1555 2.46 LINK CA CA A 508 O2A DGT A 511 1555 1555 2.34 LINK CA CA A 508 O3' DA P 4 1555 1555 2.42 LINK CA CA A 508 O HOH P 204 1555 1555 2.44 CISPEP 1 GLY A 436 SER A 437 0 -9.32 CRYST1 59.753 68.778 110.133 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009080 0.00000