HEADER TRANSCRIPTION/TRANSFERASE 24-NOV-20 7KUE TITLE CRYOEM STRUCTURE OF YEAST TFIIK (KIN28/CCL1/TFB3) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 3; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR B 38 KDA SUBUNIT,RNA COMPND 5 POLYMERASE II TRANSCRIPTION FACTOR B P38 SUBUNIT; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE KIN28; COMPND 8 CHAIN: A; COMPND 9 EC: 2.7.11.23; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CYCLIN CCL1; COMPND 12 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 9 S288C); SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 559292; SOURCE 12 STRAIN: ATCC 204508 / S288C; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 15 S288C); SOURCE 16 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 17 ORGANISM_TAXID: 559292; SOURCE 18 STRAIN: ATCC 204508 / S288C KEYWDS POLYMERASE CTD, TFIIH, PHOSPHORYLATION, KINASE, CDK, CYCLIN, KEYWDS 2 TRANSCRIPTION-TRANSFERASE COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR T.VAN EEUWEN,K.MURAKAMI,T.LI,K.L.TSAI REVDAT 1 28-APR-21 7KUE 0 JRNL AUTH T.VAN EEUWEN,T.LI,H.J.KIM,J.J.GORBEA COLON,M.I.PARKER, JRNL AUTH 2 R.L.DUNBRACK,B.A.GARCIA,K.L.TSAI,K.MURAKAMI JRNL TITL STRUCTURE OF TFIIK FOR PHOSPHORYLATION OF CTD OF RNA JRNL TITL 2 POLYMERASE II. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33827808 JRNL DOI 10.1126/SCIADV.ABD4420 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LATITUDE, CTFFIND, UCSF CHIMERA, COOT, REMARK 3 PHENIX, RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1UA2 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 81466 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7KUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253172. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF KIN28-CCL1 REMARK 245 -TFB3 FROM SACCHAROMYCES REMARK 245 CEREVISIAE. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.08 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOTTED FOR 2 SECONDS WITH REMARK 245 WHATMAN 41 ASHLESS FILTER PAPER REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : THE YEAST CDK7 COMPLEX, THAT REMARK 245 PHOSPHORYLATES THE RNA POL II C-TERMINAL DOMAIN (CTD) IN REMARK 245 TRANSCRIPTION INITIATION. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4620 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 MET C 3 REMARK 465 ASP C 4 REMARK 465 GLU C 5 REMARK 465 TYR C 6 REMARK 465 GLU C 7 REMARK 465 GLU C 8 REMARK 465 ASN C 9 REMARK 465 LYS C 10 REMARK 465 ASP C 11 REMARK 465 MET C 12 REMARK 465 CYS C 13 REMARK 465 PRO C 14 REMARK 465 ILE C 15 REMARK 465 CYS C 16 REMARK 465 LYS C 17 REMARK 465 THR C 18 REMARK 465 ASP C 19 REMARK 465 ARG C 20 REMARK 465 TYR C 21 REMARK 465 LEU C 22 REMARK 465 SER C 23 REMARK 465 PRO C 24 REMARK 465 ASP C 25 REMARK 465 VAL C 26 REMARK 465 LYS C 27 REMARK 465 PHE C 28 REMARK 465 LEU C 29 REMARK 465 VAL C 30 REMARK 465 ASN C 31 REMARK 465 PRO C 32 REMARK 465 GLU C 33 REMARK 465 CYS C 34 REMARK 465 TYR C 35 REMARK 465 HIS C 36 REMARK 465 ARG C 37 REMARK 465 ILE C 38 REMARK 465 CYS C 39 REMARK 465 GLU C 40 REMARK 465 SER C 41 REMARK 465 CYS C 42 REMARK 465 VAL C 43 REMARK 465 ASP C 44 REMARK 465 ARG C 45 REMARK 465 ILE C 46 REMARK 465 PHE C 47 REMARK 465 SER C 48 REMARK 465 LEU C 49 REMARK 465 GLY C 50 REMARK 465 PRO C 51 REMARK 465 ALA C 52 REMARK 465 GLN C 53 REMARK 465 CYS C 54 REMARK 465 PRO C 55 REMARK 465 TYR C 56 REMARK 465 LYS C 57 REMARK 465 GLY C 58 REMARK 465 CYS C 59 REMARK 465 ASP C 60 REMARK 465 LYS C 61 REMARK 465 ILE C 62 REMARK 465 LEU C 63 REMARK 465 ARG C 64 REMARK 465 LYS C 65 REMARK 465 ASN C 66 REMARK 465 LYS C 67 REMARK 465 PHE C 68 REMARK 465 LYS C 69 REMARK 465 THR C 70 REMARK 465 GLN C 71 REMARK 465 ILE C 72 REMARK 465 PHE C 73 REMARK 465 ASP C 74 REMARK 465 ASP C 75 REMARK 465 VAL C 76 REMARK 465 GLU C 77 REMARK 465 VAL C 78 REMARK 465 GLU C 79 REMARK 465 LYS C 80 REMARK 465 GLU C 81 REMARK 465 VAL C 82 REMARK 465 ASP C 83 REMARK 465 ILE C 84 REMARK 465 ARG C 85 REMARK 465 LYS C 86 REMARK 465 ARG C 87 REMARK 465 VAL C 88 REMARK 465 PHE C 89 REMARK 465 ASN C 90 REMARK 465 VAL C 91 REMARK 465 PHE C 92 REMARK 465 ASN C 93 REMARK 465 LYS C 94 REMARK 465 THR C 95 REMARK 465 ILE C 96 REMARK 465 ASP C 97 REMARK 465 ASP C 98 REMARK 465 PHE C 99 REMARK 465 ASN C 100 REMARK 465 GLY C 101 REMARK 465 ASP C 102 REMARK 465 LEU C 103 REMARK 465 VAL C 104 REMARK 465 GLU C 105 REMARK 465 TYR C 106 REMARK 465 ASN C 107 REMARK 465 LYS C 108 REMARK 465 TYR C 109 REMARK 465 LEU C 110 REMARK 465 GLU C 111 REMARK 465 GLU C 112 REMARK 465 VAL C 113 REMARK 465 GLU C 114 REMARK 465 ASP C 115 REMARK 465 ILE C 116 REMARK 465 ILE C 117 REMARK 465 TYR C 118 REMARK 465 LYS C 119 REMARK 465 LEU C 120 REMARK 465 ASP C 121 REMARK 465 HIS C 122 REMARK 465 GLY C 123 REMARK 465 ILE C 124 REMARK 465 ASP C 125 REMARK 465 VAL C 126 REMARK 465 ALA C 127 REMARK 465 LYS C 128 REMARK 465 THR C 129 REMARK 465 GLU C 130 REMARK 465 GLU C 131 REMARK 465 LYS C 132 REMARK 465 LEU C 133 REMARK 465 ARG C 134 REMARK 465 THR C 135 REMARK 465 TYR C 136 REMARK 465 GLU C 137 REMARK 465 GLU C 138 REMARK 465 LEU C 139 REMARK 465 ASN C 140 REMARK 465 LYS C 141 REMARK 465 GLN C 142 REMARK 465 LEU C 143 REMARK 465 ILE C 144 REMARK 465 MET C 145 REMARK 465 ASN C 146 REMARK 465 ASN C 147 REMARK 465 LEU C 148 REMARK 465 GLU C 149 REMARK 465 ARG C 150 REMARK 465 SER C 151 REMARK 465 ARG C 152 REMARK 465 THR C 153 REMARK 465 GLU C 154 REMARK 465 ILE C 155 REMARK 465 GLU C 156 REMARK 465 SER C 157 REMARK 465 PHE C 158 REMARK 465 GLU C 159 REMARK 465 GLN C 160 REMARK 465 ARG C 161 REMARK 465 GLN C 162 REMARK 465 LYS C 163 REMARK 465 PHE C 164 REMARK 465 GLU C 165 REMARK 465 LYS C 166 REMARK 465 GLU C 167 REMARK 465 MET C 168 REMARK 465 LYS C 169 REMARK 465 LEU C 170 REMARK 465 LYS C 171 REMARK 465 LYS C 172 REMARK 465 ARG C 173 REMARK 465 LEU C 174 REMARK 465 LEU C 175 REMARK 465 GLU C 176 REMARK 465 ARG C 177 REMARK 465 GLN C 178 REMARK 465 ILE C 179 REMARK 465 GLU C 180 REMARK 465 GLU C 181 REMARK 465 GLU C 182 REMARK 465 GLU C 183 REMARK 465 ARG C 184 REMARK 465 MET C 185 REMARK 465 ASN C 186 REMARK 465 LYS C 187 REMARK 465 GLU C 188 REMARK 465 TRP C 189 REMARK 465 THR C 190 REMARK 465 LYS C 191 REMARK 465 LYS C 192 REMARK 465 GLU C 193 REMARK 465 ILE C 194 REMARK 465 VAL C 195 REMARK 465 ASN C 196 REMARK 465 ARG C 197 REMARK 465 LEU C 198 REMARK 465 SER C 199 REMARK 465 THR C 200 REMARK 465 THR C 201 REMARK 465 THR C 202 REMARK 465 GLN C 203 REMARK 465 ASP C 204 REMARK 465 ILE C 205 REMARK 465 ASN C 206 REMARK 465 GLU C 207 REMARK 465 THR C 208 REMARK 465 ILE C 209 REMARK 465 GLU C 210 REMARK 465 GLY C 211 REMARK 465 VAL C 212 REMARK 465 LYS C 213 REMARK 465 ASN C 214 REMARK 465 THR C 215 REMARK 465 VAL C 216 REMARK 465 LYS C 217 REMARK 465 LEU C 218 REMARK 465 LYS C 219 REMARK 465 LYS C 220 REMARK 465 SER C 221 REMARK 465 SER C 222 REMARK 465 ALA C 223 REMARK 465 ARG C 224 REMARK 465 ARG C 225 REMARK 465 LYS C 226 REMARK 465 LEU C 227 REMARK 465 GLU C 228 REMARK 465 GLU C 229 REMARK 465 LEU C 230 REMARK 465 ASN C 231 REMARK 465 ARG C 232 REMARK 465 VAL C 233 REMARK 465 LEU C 234 REMARK 465 LYS C 235 REMARK 465 ASN C 236 REMARK 465 ASN C 237 REMARK 465 PRO C 238 REMARK 465 TYR C 239 REMARK 465 PHE C 240 REMARK 465 ASN C 241 REMARK 465 SER C 242 REMARK 465 ASN C 243 REMARK 465 VAL C 244 REMARK 465 ASN C 245 REMARK 465 VAL C 246 REMARK 465 GLN C 247 REMARK 465 ASN C 248 REMARK 465 SER C 249 REMARK 465 ARG C 250 REMARK 465 LEU C 251 REMARK 465 LYS C 252 REMARK 465 ASP C 253 REMARK 465 ALA C 254 REMARK 465 VAL C 255 REMARK 465 PRO C 256 REMARK 465 PHE C 257 REMARK 465 THR C 258 REMARK 465 LEU C 321 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 MET A 5 REMARK 465 GLN A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 GLU A 42 REMARK 465 PHE A 43 REMARK 465 ILE A 304 REMARK 465 ARG A 305 REMARK 465 ASN A 306 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 GLN B 5 REMARK 465 LEU B 6 REMARK 465 ASN B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 THR B 14 REMARK 465 PRO B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 THR B 18 REMARK 465 MET B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 GLU B 23 REMARK 465 LYS B 24 REMARK 465 GLU B 25 REMARK 465 ALA B 26 REMARK 465 LYS B 27 REMARK 465 LEU B 28 REMARK 465 LYS B 29 REMARK 465 SER B 30 REMARK 465 ALA B 31 REMARK 465 ASP B 32 REMARK 465 GLU B 33 REMARK 465 ASN B 34 REMARK 465 ASN B 35 REMARK 465 LYS B 36 REMARK 465 PRO B 37 REMARK 465 PRO B 38 REMARK 465 ASN B 39 REMARK 465 TYR B 40 REMARK 465 LYS B 41 REMARK 465 ARG B 42 REMARK 465 ILE B 43 REMARK 465 SER B 44 REMARK 465 ASP B 45 REMARK 465 SER B 46 REMARK 465 GLN B 47 REMARK 465 LEU B 48 REMARK 465 ILE B 77 REMARK 465 ALA B 78 REMARK 465 TYR B 79 REMARK 465 ILE B 80 REMARK 465 GLU B 81 REMARK 465 GLU B 82 REMARK 465 ASN B 83 REMARK 465 LEU B 84 REMARK 465 LEU B 85 REMARK 465 LYS B 86 REMARK 465 PHE B 87 REMARK 465 ARG B 88 REMARK 465 GLU B 89 REMARK 465 ALA B 90 REMARK 465 HIS B 91 REMARK 465 ASN B 92 REMARK 465 LEU B 93 REMARK 465 THR B 94 REMARK 465 GLU B 95 REMARK 465 GLU B 96 REMARK 465 GLU B 97 REMARK 465 ILE B 98 REMARK 465 LYS B 99 REMARK 465 VAL B 100 REMARK 465 LEU B 101 REMARK 465 GLU B 102 REMARK 465 ALA B 103 REMARK 465 LYS B 104 REMARK 465 ALA B 105 REMARK 465 ILE B 106 REMARK 465 PRO B 107 REMARK 465 LEU B 108 REMARK 465 THR B 109 REMARK 465 PRO B 288 REMARK 465 SER B 289 REMARK 465 ARG B 290 REMARK 465 GLU B 291 REMARK 465 GLY B 292 REMARK 465 SER B 293 REMARK 465 GLN B 294 REMARK 465 GLU B 295 REMARK 465 SER B 296 REMARK 465 VAL B 297 REMARK 465 PRO B 298 REMARK 465 GLY B 299 REMARK 465 ASN B 300 REMARK 465 GLU B 301 REMARK 465 LYS B 302 REMARK 465 GLU B 303 REMARK 465 GLU B 304 REMARK 465 PRO B 305 REMARK 465 GLN B 306 REMARK 465 ASN B 307 REMARK 465 ASP B 308 REMARK 465 ALA B 309 REMARK 465 SER B 310 REMARK 465 THR B 311 REMARK 465 THR B 312 REMARK 465 GLU B 313 REMARK 465 LYS B 314 REMARK 465 ASN B 315 REMARK 465 LYS B 316 REMARK 465 GLU B 317 REMARK 465 LYS B 318 REMARK 465 SER B 319 REMARK 465 THR B 320 REMARK 465 GLU B 321 REMARK 465 SER B 322 REMARK 465 GLU B 323 REMARK 465 GLU B 324 REMARK 465 TYR B 325 REMARK 465 ASP B 345 REMARK 465 CYS B 346 REMARK 465 LYS B 347 REMARK 465 PRO B 348 REMARK 465 PRO B 349 REMARK 465 SER B 350 REMARK 465 THR B 351 REMARK 465 GLU B 352 REMARK 465 GLU B 353 REMARK 465 ALA B 354 REMARK 465 LYS B 355 REMARK 465 LYS B 356 REMARK 465 ILE B 357 REMARK 465 ALA B 358 REMARK 465 ALA B 359 REMARK 465 LYS B 360 REMARK 465 ASN B 361 REMARK 465 TYR B 362 REMARK 465 TYR B 363 REMARK 465 CYS B 364 REMARK 465 GLN B 365 REMARK 465 ASN B 366 REMARK 465 PRO B 367 REMARK 465 SER B 368 REMARK 465 THR B 369 REMARK 465 LEU B 370 REMARK 465 ILE B 371 REMARK 465 GLN B 372 REMARK 465 LYS B 373 REMARK 465 LEU B 374 REMARK 465 LYS B 375 REMARK 465 ARG B 376 REMARK 465 LYS B 377 REMARK 465 LEU B 378 REMARK 465 ASN B 379 REMARK 465 GLY B 380 REMARK 465 GLU B 381 REMARK 465 ASP B 382 REMARK 465 THR B 383 REMARK 465 SER B 384 REMARK 465 SER B 385 REMARK 465 THR B 386 REMARK 465 VAL B 387 REMARK 465 GLU B 388 REMARK 465 LYS B 389 REMARK 465 LYS B 390 REMARK 465 GLN B 391 REMARK 465 LYS B 392 REMARK 465 THR B 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 THR A 17 OG1 CG2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 224 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 228 CB - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 ASP A 228 N - CA - C ANGL. DEV. = 32.1 DEGREES REMARK 500 TRP A 229 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 TRP A 229 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 MET A 236 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 PHE B 177 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP B 234 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 256 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 266 33.78 -145.41 REMARK 500 GLU A 10 -158.94 -149.03 REMARK 500 PRO A 87 -175.56 -68.41 REMARK 500 HIS A 127 71.82 58.03 REMARK 500 ARG A 128 32.34 -89.76 REMARK 500 PHE A 148 48.19 -84.28 REMARK 500 SER A 163 -78.04 -116.43 REMARK 500 LEU A 205 72.84 53.60 REMARK 500 GLN A 208 50.67 -94.45 REMARK 500 ASP A 210 -155.06 -156.28 REMARK 500 ARG A 253 -62.67 -93.44 REMARK 500 ARG A 255 -2.34 67.56 REMARK 500 PHE A 256 35.45 -147.01 REMARK 500 LEU A 271 30.98 -96.84 REMARK 500 MET B 57 -3.16 -140.96 REMARK 500 LEU B 131 30.20 -98.32 REMARK 500 ASN B 132 62.15 61.65 REMARK 500 PHE B 177 37.51 72.35 REMARK 500 LYS B 188 36.46 -97.85 REMARK 500 ARG B 191 -13.46 72.30 REMARK 500 PHE B 197 59.67 -98.18 REMARK 500 LYS B 206 46.50 36.91 REMARK 500 ASP B 234 18.10 48.17 REMARK 500 LEU B 235 -66.42 -96.83 REMARK 500 GLN B 240 33.67 -140.11 REMARK 500 ALA B 277 -1.92 -141.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23036 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF YEAST TFIIK (KIN28/CCL1/TFB3) COMPLEX DBREF 7KUE C 1 321 UNP Q03290 TFB3_YEAST 1 321 DBREF 7KUE A 1 306 UNP P06242 KIN28_YEAST 1 306 DBREF 7KUE B 1 393 UNP P37366 CCL1_YEAST 1 393 SEQADV 7KUE PRO C 269 UNP Q03290 ARG 269 CONFLICT SEQADV 7KUE SER B 46 UNP P37366 ASP 46 CONFLICT SEQADV 7KUE GLN B 47 UNP P37366 ASP 47 CONFLICT SEQRES 1 C 321 MET LEU MET ASP GLU TYR GLU GLU ASN LYS ASP MET CYS SEQRES 2 C 321 PRO ILE CYS LYS THR ASP ARG TYR LEU SER PRO ASP VAL SEQRES 3 C 321 LYS PHE LEU VAL ASN PRO GLU CYS TYR HIS ARG ILE CYS SEQRES 4 C 321 GLU SER CYS VAL ASP ARG ILE PHE SER LEU GLY PRO ALA SEQRES 5 C 321 GLN CYS PRO TYR LYS GLY CYS ASP LYS ILE LEU ARG LYS SEQRES 6 C 321 ASN LYS PHE LYS THR GLN ILE PHE ASP ASP VAL GLU VAL SEQRES 7 C 321 GLU LYS GLU VAL ASP ILE ARG LYS ARG VAL PHE ASN VAL SEQRES 8 C 321 PHE ASN LYS THR ILE ASP ASP PHE ASN GLY ASP LEU VAL SEQRES 9 C 321 GLU TYR ASN LYS TYR LEU GLU GLU VAL GLU ASP ILE ILE SEQRES 10 C 321 TYR LYS LEU ASP HIS GLY ILE ASP VAL ALA LYS THR GLU SEQRES 11 C 321 GLU LYS LEU ARG THR TYR GLU GLU LEU ASN LYS GLN LEU SEQRES 12 C 321 ILE MET ASN ASN LEU GLU ARG SER ARG THR GLU ILE GLU SEQRES 13 C 321 SER PHE GLU GLN ARG GLN LYS PHE GLU LYS GLU MET LYS SEQRES 14 C 321 LEU LYS LYS ARG LEU LEU GLU ARG GLN ILE GLU GLU GLU SEQRES 15 C 321 GLU ARG MET ASN LYS GLU TRP THR LYS LYS GLU ILE VAL SEQRES 16 C 321 ASN ARG LEU SER THR THR THR GLN ASP ILE ASN GLU THR SEQRES 17 C 321 ILE GLU GLY VAL LYS ASN THR VAL LYS LEU LYS LYS SER SEQRES 18 C 321 SER ALA ARG ARG LYS LEU GLU GLU LEU ASN ARG VAL LEU SEQRES 19 C 321 LYS ASN ASN PRO TYR PHE ASN SER ASN VAL ASN VAL GLN SEQRES 20 C 321 ASN SER ARG LEU LYS ASP ALA VAL PRO PHE THR PRO PHE SEQRES 21 C 321 ASN GLY ASP ARG GLU ALA HIS PRO PRO PHE THR LEU LYS SEQRES 22 C 321 GLY SER VAL TYR ASN ASP PRO PHE ILE LYS ASP LEU GLU SEQRES 23 C 321 HIS ARG LYS GLU PHE ILE ALA SER GLY PHE ASN THR ASN SEQRES 24 C 321 TYR ALA TYR GLU ARG VAL LEU THR GLU ALA PHE MET GLY SEQRES 25 C 321 LEU GLY CYS VAL ILE SER GLU GLU LEU SEQRES 1 A 306 MET LYS VAL ASN MET GLU TYR THR LYS GLU LYS LYS VAL SEQRES 2 A 306 GLY GLU GLY THR TYR ALA VAL VAL TYR LEU GLY CYS GLN SEQRES 3 A 306 HIS SER THR GLY ARG LYS ILE ALA ILE LYS GLU ILE LYS SEQRES 4 A 306 THR SER GLU PHE LYS ASP GLY LEU ASP MET SER ALA ILE SEQRES 5 A 306 ARG GLU VAL LYS TYR LEU GLN GLU MET GLN HIS PRO ASN SEQRES 6 A 306 VAL ILE GLU LEU ILE ASP ILE PHE MET ALA TYR ASP ASN SEQRES 7 A 306 LEU ASN LEU VAL LEU GLU PHE LEU PRO THR ASP LEU GLU SEQRES 8 A 306 VAL VAL ILE LYS ASP LYS SER ILE LEU PHE THR PRO ALA SEQRES 9 A 306 ASP ILE LYS ALA TRP MET LEU MET THR LEU ARG GLY VAL SEQRES 10 A 306 TYR HIS CYS HIS ARG ASN PHE ILE LEU HIS ARG ASP LEU SEQRES 11 A 306 LYS PRO ASN ASN LEU LEU PHE SER PRO ASP GLY GLN ILE SEQRES 12 A 306 LYS VAL ALA ASP PHE GLY LEU ALA ARG ALA ILE PRO ALA SEQRES 13 A 306 PRO HIS GLU ILE LEU TPO SER ASN VAL VAL THR ARG TRP SEQRES 14 A 306 TYR ARG ALA PRO GLU LEU LEU PHE GLY ALA LYS HIS TYR SEQRES 15 A 306 THR SER ALA ILE ASP ILE TRP SER VAL GLY VAL ILE PHE SEQRES 16 A 306 ALA GLU LEU MET LEU ARG ILE PRO TYR LEU PRO GLY GLN SEQRES 17 A 306 ASN ASP VAL ASP GLN MET GLU VAL THR PHE ARG ALA LEU SEQRES 18 A 306 GLY THR PRO THR ASP ARG ASP TRP PRO GLU VAL SER SER SEQRES 19 A 306 PHE MET THR TYR ASN LYS LEU GLN ILE TYR PRO PRO PRO SEQRES 20 A 306 SER ARG ASP GLU LEU ARG LYS ARG PHE ILE ALA ALA SER SEQRES 21 A 306 GLU TYR ALA LEU ASP PHE MET CYS GLY MET LEU THR MET SEQRES 22 A 306 ASN PRO GLN LYS ARG TRP THR ALA VAL GLN CYS LEU GLU SEQRES 23 A 306 SER ASP TYR PHE LYS GLU LEU PRO PRO PRO SER ASP PRO SEQRES 24 A 306 SER SER ILE LYS ILE ARG ASN SEQRES 1 B 393 MET THR ASP ILE GLN LEU ASN GLY LYS SER THR LEU ASP SEQRES 2 B 393 THR PRO SER ALA THR MET SER ALA LYS GLU LYS GLU ALA SEQRES 3 B 393 LYS LEU LYS SER ALA ASP GLU ASN ASN LYS PRO PRO ASN SEQRES 4 B 393 TYR LYS ARG ILE SER ASP SER GLN LEU TYR ARG HIS SER SEQRES 5 B 393 SER GLN TYR ARG MET TRP SER TYR THR LYS ASP GLN LEU SEQRES 6 B 393 GLN GLU LYS ARG VAL ASP THR ASN ALA ARG ALA ILE ALA SEQRES 7 B 393 TYR ILE GLU GLU ASN LEU LEU LYS PHE ARG GLU ALA HIS SEQRES 8 B 393 ASN LEU THR GLU GLU GLU ILE LYS VAL LEU GLU ALA LYS SEQRES 9 B 393 ALA ILE PRO LEU THR MET GLU GLU GLU LEU ASP LEU VAL SEQRES 10 B 393 ASN PHE TYR ALA LYS LYS VAL GLN VAL ILE ALA GLN HIS SEQRES 11 B 393 LEU ASN LEU PRO THR GLU VAL VAL ALA THR ALA ILE SER SEQRES 12 B 393 PHE PHE ARG ARG PHE PHE LEU GLU ASN SER VAL MET GLN SEQRES 13 B 393 ILE ASP PRO LYS SER ILE VAL HIS THR THR ILE PHE LEU SEQRES 14 B 393 ALA CYS LYS SER GLU ASN TYR PHE ILE SER VAL ASP SER SEQRES 15 B 393 PHE ALA GLN LYS ALA LYS SER THR ARG ASP SER VAL LEU SEQRES 16 B 393 LYS PHE GLU PHE LYS LEU LEU GLU SER LEU LYS PHE SER SEQRES 17 B 393 LEU LEU ASN HIS HIS PRO TYR LYS PRO LEU HIS GLY PHE SEQRES 18 B 393 PHE LEU ASP ILE GLN ASN VAL LEU TYR GLY LYS VAL ASP SEQRES 19 B 393 LEU ASN TYR MET GLY GLN ILE TYR ASP ARG CYS LYS LYS SEQRES 20 B 393 ARG ILE THR ALA ALA LEU LEU THR ASP VAL VAL TYR PHE SEQRES 21 B 393 TYR THR PRO PRO GLN ILE THR LEU ALA THR LEU LEU ILE SEQRES 22 B 393 GLU ASP GLU ALA LEU VAL THR ARG TYR LEU GLU THR LYS SEQRES 23 B 393 PHE PRO SER ARG GLU GLY SER GLN GLU SER VAL PRO GLY SEQRES 24 B 393 ASN GLU LYS GLU GLU PRO GLN ASN ASP ALA SER THR THR SEQRES 25 B 393 GLU LYS ASN LYS GLU LYS SER THR GLU SER GLU GLU TYR SEQRES 26 B 393 SER ILE ASP SER ALA LYS LEU LEU THR ILE ILE ARG GLU SEQRES 27 B 393 CYS LYS SER ILE ILE GLU ASP CYS LYS PRO PRO SER THR SEQRES 28 B 393 GLU GLU ALA LYS LYS ILE ALA ALA LYS ASN TYR TYR CYS SEQRES 29 B 393 GLN ASN PRO SER THR LEU ILE GLN LYS LEU LYS ARG LYS SEQRES 30 B 393 LEU ASN GLY GLU ASP THR SER SER THR VAL GLU LYS LYS SEQRES 31 B 393 GLN LYS THR MODRES 7KUE TPO A 162 THR MODIFIED RESIDUE HET TPO A 162 11 HET ADP A 401 27 HET AF3 A 402 4 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 AF3 AL F3 HELIX 1 AA1 ASP C 284 HIS C 287 5 4 HELIX 2 AA2 ARG C 288 ALA C 293 1 6 HELIX 3 AA3 ASN C 297 ALA C 309 1 13 HELIX 4 AA4 ASP A 48 LYS A 56 1 9 HELIX 5 AA5 THR A 88 LYS A 95 1 8 HELIX 6 AA6 ALA A 104 ASN A 123 1 20 HELIX 7 AA7 THR A 167 ARG A 171 5 5 HELIX 8 AA8 ALA A 172 GLY A 178 1 7 HELIX 9 AA9 ALA A 185 ARG A 201 1 17 HELIX 10 AB1 VAL A 211 LEU A 221 1 11 HELIX 11 AB2 SER A 248 LEU A 252 5 5 HELIX 12 AB3 TYR A 262 LEU A 271 1 10 HELIX 13 AB4 THR A 280 CYS A 284 5 5 HELIX 14 AB5 SER B 52 MET B 57 1 6 HELIX 15 AB6 THR B 61 ASN B 73 1 13 HELIX 16 AB7 GLU B 111 LEU B 131 1 21 HELIX 17 AB8 PRO B 134 ASN B 152 1 19 HELIX 18 AB9 ASP B 158 GLU B 174 1 17 HELIX 19 AC1 SER B 179 LYS B 186 1 8 HELIX 20 AC2 GLU B 198 LYS B 206 1 9 HELIX 21 AC3 PRO B 214 PHE B 222 1 9 HELIX 22 AC4 LEU B 223 LEU B 229 1 7 HELIX 23 AC5 LEU B 235 GLN B 240 1 6 HELIX 24 AC6 ARG B 244 THR B 255 1 12 HELIX 25 AC7 THR B 262 LEU B 271 1 10 HELIX 26 AC8 LEU B 272 ASP B 275 5 4 HELIX 27 AC9 LEU B 278 PHE B 287 1 10 HELIX 28 AD1 ASP B 328 GLU B 344 1 17 SHEET 1 AA1 3 ALA A 19 VAL A 21 0 SHEET 2 AA1 3 LYS A 36 ILE A 38 -1 O GLU A 37 N VAL A 20 SHEET 3 AA1 3 LEU A 79 ASN A 80 -1 O LEU A 79 N ILE A 38 SHEET 1 AA2 2 LEU A 135 LEU A 136 0 SHEET 2 AA2 2 LYS A 144 VAL A 145 -1 O LYS A 144 N LEU A 136 LINK C LEU A 161 N TPO A 162 1555 1555 1.33 LINK C TPO A 162 N SER A 163 1555 1555 1.33 CISPEP 1 LEU A 293 PRO A 294 0 0.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000