data_7KUL # _entry.id 7KUL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7KUL pdb_00007kul 10.2210/pdb7kul/pdb WWPDB D_1000253077 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KUL _pdbx_database_status.recvd_initial_deposition_date 2020-11-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Giurgiu, C.' 2 0000-0003-0145-0110 'Szostak, J.W.' 3 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 22925 _citation.page_last 22932 _citation.title 'Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202109714 _citation.pdbx_database_id_PubMed 34428345 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Giurgiu, C.' 1 0000-0003-0145-0110 primary 'Fang, Z.' 2 ? primary 'Aitken, H.R.M.' 3 ? primary 'Kim, S.C.' 4 ? primary 'Pazienza, L.' 5 ? primary 'Mittal, S.' 6 ? primary 'Szostak, J.W.' 7 0000-0003-4131-1203 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7KUL _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.443 _cell.length_a_esd ? _cell.length_b 47.443 _cell.length_b_esd ? _cell.length_c 82.803 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3') ; 4416.824 2 ? ? ? ? 2 non-polymer syn "DIGUANOSINE-5'-TRIPHOSPHATE" 788.406 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 12 ? ? ? ? 4 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LKC)(LCC)(LCC)(LCG)ACUUAAGUC(DG)' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LKC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7KUL _struct_ref.pdbx_db_accession 7KUL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7KUL A 1 ? 14 ? 7KUL 1 ? 14 ? 1 14 2 1 7KUL B 1 ? 14 ? 7KUL 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GP3 non-polymer . "DIGUANOSINE-5'-TRIPHOSPHATE" ? 'C20 H27 N10 O18 P3' 788.406 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LKC 'RNA linking' . '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' ? 'C11 H15 N3 O5' 269.254 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KUL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Magnesium acetate tetrahydrate, 0.1 M Sodium cacodylate trihydrate pH 6.5, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 50 mM Magnesium Chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7KUL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.64 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13719 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.6 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.953 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.079 _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.985 _reflns.pdbx_CC_star 0.996 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.64 _reflns_shell.d_res_low 1.67 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 643 _reflns_shell.percent_possible_all 97.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.314 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.903 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.339 _reflns_shell.pdbx_Rpim_I_all 0.123 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.989 _reflns_shell.pdbx_CC_star 0.997 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.001 _refine.aniso_B[1][2] 0.001 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.001 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.004 _refine.B_iso_max ? _refine.B_iso_mean 18.930 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KUL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.64 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12116 _refine.ls_number_reflns_R_free 569 _refine.ls_number_reflns_R_work 11547 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.581 _refine.ls_percent_reflns_R_free 4.696 _refine.ls_R_factor_all 0.210 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2470 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2079 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5UEE _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.114 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.864 _refine.overall_SU_ML 0.064 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 509 _refine_hist.pdbx_number_atoms_ligand 201 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 822 _refine_hist.d_res_high 1.64 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.023 0.017 792 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.028 0.024 348 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.880 2.010 1200 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.840 3.171 818 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.481 0.200 138 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.816 0.200 20 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.019 0.021 400 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.022 152 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.090 0.200 72 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.222 0.200 490 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.252 0.200 311 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.244 0.200 175 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.166 0.200 95 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.095 0.200 2 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.105 0.200 6 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.129 0.200 7 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.169 0.200 32 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.138 0.200 17 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.091 1.923 792 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.090 1.923 793 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.940 2.897 1200 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.939 2.896 1201 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.730 17.943 1122 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.501 17.125 1086 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.64 1.681 . . 17 454 47.8659 . . . 0.315 . 0.214 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.681 1.727 . . 26 508 53.9939 . . . 0.209 . 0.194 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.727 1.777 . . 38 558 63.1356 . . . 0.223 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.777 1.831 . . 41 680 76.7838 . . . 0.256 . 0.199 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.831 1.891 . . 25 822 96.2500 . . . 0.182 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.891 1.958 . . 46 829 99.3190 . . . 0.218 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.958 2.032 . . 20 814 100.0000 . . . 0.294 . 0.242 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.032 2.114 . . 40 769 100.0000 . . . 0.281 . 0.222 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.114 2.208 . . 41 730 100.0000 . . . 0.305 . 0.248 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.208 2.316 . . 35 713 100.0000 . . . 0.223 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.316 2.441 . . 30 686 100.0000 . . . 0.328 . 0.206 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.441 2.589 . . 34 655 99.8551 . . . 0.345 . 0.220 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.589 2.768 . . 51 575 99.6815 . . . 0.222 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.768 2.989 . . 26 579 99.6705 . . . 0.322 . 0.212 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.989 3.274 . . 24 509 97.6190 . . . 0.261 . 0.176 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.274 3.660 . . 22 478 96.8992 . . . 0.258 . 0.199 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.660 4.225 . . 15 411 95.7303 . . . 0.099 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.225 5.171 . . 27 361 97.4874 . . . 0.179 . 0.163 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.171 7.299 . . 8 285 95.1299 . . . 0.310 . 0.179 . . . . . . . . . . . 'X-RAY DIFFRACTION' 7.299 50 . . 3 131 66.6667 . . . 0.397 . 0.295 . . . . . . . . . . . # _struct.entry_id 7KUL _struct.title ;DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KUL _struct_keywords.text 'RNA, nonenzymatic RNA extension, DNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 4 ? R N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LKC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LKC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.573 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale5 covale both ? B LKC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LKC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.584 ? ? metalc1 metalc ? ? A C 6 OP1 ? ? ? 1_555 M MG . MG ? ? A C 6 B MG 104 2_565 ? ? ? ? ? ? ? 2.604 ? ? metalc2 metalc ? ? C GP3 . O3D ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 102 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc3 metalc ? ? C GP3 . O2D ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 102 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc4 metalc ? ? C GP3 . O3D ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 102 2_565 ? ? ? ? ? ? ? 2.446 ? ? metalc5 metalc ? ? C GP3 . O2D ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 102 3_455 ? ? ? ? ? ? ? 2.362 ? ? metalc6 metalc ? ? C GP3 . O2A ? ? ? 1_555 P MG . MG ? ? A GP3 101 B MG 107 1_555 ? ? ? ? ? ? ? 1.932 ? ? metalc7 metalc ? ? C GP3 . O2B ? ? ? 1_555 P MG . MG ? ? A GP3 101 B MG 107 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc8 metalc ? ? C GP3 . O3B ? ? ? 1_555 P MG . MG ? ? A GP3 101 B MG 107 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc9 metalc ? ? C GP3 . O2G ? ? ? 1_555 P MG . MG ? ? A GP3 101 B MG 107 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 J GP3 . O3D ? ? A MG 102 B GP3 101 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 J GP3 . O2D ? ? A MG 102 B GP3 101 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 J GP3 . O3D ? ? A MG 102 B GP3 101 2_565 ? ? ? ? ? ? ? 2.431 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 J GP3 . O2D ? ? A MG 102 B GP3 101 3_455 ? ? ? ? ? ? ? 2.369 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 214 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 223 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 253 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 216 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 222 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 252 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 104 A HOH 203 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 104 A HOH 227 3_455 ? ? ? ? ? ? ? 2.081 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 104 A HOH 236 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 B HOH 232 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 B HOH 240 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 B HOH 247 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc26 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 202 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 222 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 242 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 248 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 255 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 257 1_555 ? ? ? ? ? ? ? 1.878 ? ? metalc32 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 106 A HOH 215 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc33 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 106 A HOH 229 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc34 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 106 A HOH 256 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc35 metalc ? ? H MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 106 B HOH 205 1_555 ? ? ? ? ? ? ? 1.920 ? ? metalc36 metalc ? ? I MG . MG ? ? ? 1_555 J GP3 . O2A ? ? A MG 107 B GP3 101 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc37 metalc ? ? I MG . MG ? ? ? 1_555 J GP3 . O2B ? ? A MG 107 B GP3 101 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc38 metalc ? ? I MG . MG ? ? ? 1_555 J GP3 . O3B ? ? A MG 107 B GP3 101 1_555 ? ? ? ? ? ? ? 2.973 ? ? metalc39 metalc ? ? I MG . MG ? ? ? 1_555 J GP3 . O2G ? ? A MG 107 B GP3 101 1_555 ? ? ? ? ? ? ? 1.933 ? ? metalc40 metalc ? ? I MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 107 B HOH 201 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc41 metalc ? ? Q HOH . O ? ? ? 1_555 P MG . MG ? ? A HOH 201 B MG 107 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc42 metalc ? ? Q HOH . O ? ? ? 1_555 O MG . MG ? ? A HOH 207 B MG 106 1_555 ? ? ? ? ? ? ? 1.882 ? ? metalc43 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? A HOH 232 B MG 103 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc44 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? A HOH 244 B MG 103 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc45 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? A HOH 247 B MG 103 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc46 metalc ? ? Q HOH . O ? ? ? 3_455 M MG . MG ? ? A HOH 247 B MG 104 1_555 ? ? ? ? ? ? ? 2.736 ? ? metalc47 metalc ? ? B C 6 OP1 ? ? ? 1_555 M MG . MG ? ? B C 6 B MG 104 1_555 ? ? ? ? ? ? ? 2.644 ? ? metalc48 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 103 B HOH 203 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc49 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 103 B HOH 230 2_565 ? ? ? ? ? ? ? 2.072 ? ? metalc50 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 103 B HOH 233 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc51 metalc ? ? M MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 104 B HOH 247 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc52 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 202 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc53 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 225 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc54 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 239 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc55 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 246 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc56 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 254 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc57 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 105 B HOH 255 1_555 ? ? ? ? ? ? ? 1.806 ? ? metalc58 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 106 B HOH 212 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc59 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 106 B HOH 217 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc60 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? B MG 106 B HOH 253 1_555 ? ? ? ? ? ? ? 2.111 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7KUL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021078 _atom_sites.fract_transf_matrix[1][2] 0.012169 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024339 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012077 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 12 12 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.859 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LKC 1 1 1 LKC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 DG 14 14 14 DG DG A . n B 1 1 LKC 1 1 1 LKC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 DG 14 14 14 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GP3 1 101 101 GP3 GP3 A . D 3 MG 1 102 2 MG MG A . E 3 MG 1 103 4 MG MG A . F 3 MG 1 104 5 MG MG A . G 3 MG 1 105 6 MG MG A . H 3 MG 1 106 11 MG MG A . I 3 MG 1 107 12 MG MG A . J 2 GP3 1 101 101 GP3 GP3 B . K 3 MG 1 102 1 MG MG B . L 3 MG 1 103 3 MG MG B . M 3 MG 1 104 7 MG MG B . N 3 MG 1 105 8 MG MG B . O 3 MG 1 106 9 MG MG B . P 3 MG 1 107 10 MG MG B . Q 4 HOH 1 201 100 HOH HOH A . Q 4 HOH 2 202 37 HOH HOH A . Q 4 HOH 3 203 18 HOH HOH A . Q 4 HOH 4 204 98 HOH HOH A . Q 4 HOH 5 205 108 HOH HOH A . Q 4 HOH 6 206 56 HOH HOH A . Q 4 HOH 7 207 30 HOH HOH A . Q 4 HOH 8 208 48 HOH HOH A . Q 4 HOH 9 209 119 HOH HOH A . Q 4 HOH 10 210 33 HOH HOH A . Q 4 HOH 11 211 69 HOH HOH A . Q 4 HOH 12 212 70 HOH HOH A . Q 4 HOH 13 213 21 HOH HOH A . Q 4 HOH 14 214 12 HOH HOH A . Q 4 HOH 15 215 67 HOH HOH A . Q 4 HOH 16 216 72 HOH HOH A . Q 4 HOH 17 217 79 HOH HOH A . Q 4 HOH 18 218 101 HOH HOH A . Q 4 HOH 19 219 112 HOH HOH A . Q 4 HOH 20 220 93 HOH HOH A . Q 4 HOH 21 221 99 HOH HOH A . Q 4 HOH 22 222 41 HOH HOH A . Q 4 HOH 23 223 7 HOH HOH A . Q 4 HOH 24 224 86 HOH HOH A . Q 4 HOH 25 225 46 HOH HOH A . Q 4 HOH 26 226 25 HOH HOH A . Q 4 HOH 27 227 14 HOH HOH A . Q 4 HOH 28 228 23 HOH HOH A . Q 4 HOH 29 229 111 HOH HOH A . Q 4 HOH 30 230 31 HOH HOH A . Q 4 HOH 31 231 32 HOH HOH A . Q 4 HOH 32 232 5 HOH HOH A . Q 4 HOH 33 233 61 HOH HOH A . Q 4 HOH 34 234 29 HOH HOH A . Q 4 HOH 35 235 118 HOH HOH A . Q 4 HOH 36 236 19 HOH HOH A . Q 4 HOH 37 237 80 HOH HOH A . Q 4 HOH 38 238 22 HOH HOH A . Q 4 HOH 39 239 114 HOH HOH A . Q 4 HOH 40 240 47 HOH HOH A . Q 4 HOH 41 241 45 HOH HOH A . Q 4 HOH 42 242 40 HOH HOH A . Q 4 HOH 43 243 89 HOH HOH A . Q 4 HOH 44 244 2 HOH HOH A . Q 4 HOH 45 245 42 HOH HOH A . Q 4 HOH 46 246 115 HOH HOH A . Q 4 HOH 47 247 1 HOH HOH A . Q 4 HOH 48 248 117 HOH HOH A . Q 4 HOH 49 249 95 HOH HOH A . Q 4 HOH 50 250 113 HOH HOH A . Q 4 HOH 51 251 87 HOH HOH A . Q 4 HOH 52 252 57 HOH HOH A . Q 4 HOH 53 253 9 HOH HOH A . Q 4 HOH 54 254 62 HOH HOH A . Q 4 HOH 55 255 64 HOH HOH A . Q 4 HOH 56 256 43 HOH HOH A . Q 4 HOH 57 257 63 HOH HOH A . R 4 HOH 1 201 102 HOH HOH B . R 4 HOH 2 202 52 HOH HOH B . R 4 HOH 3 203 6 HOH HOH B . R 4 HOH 4 204 120 HOH HOH B . R 4 HOH 5 205 44 HOH HOH B . R 4 HOH 6 206 78 HOH HOH B . R 4 HOH 7 207 49 HOH HOH B . R 4 HOH 8 208 85 HOH HOH B . R 4 HOH 9 209 84 HOH HOH B . R 4 HOH 10 210 51 HOH HOH B . R 4 HOH 11 211 74 HOH HOH B . R 4 HOH 12 212 81 HOH HOH B . R 4 HOH 13 213 96 HOH HOH B . R 4 HOH 14 214 109 HOH HOH B . R 4 HOH 15 215 20 HOH HOH B . R 4 HOH 16 216 8 HOH HOH B . R 4 HOH 17 217 82 HOH HOH B . R 4 HOH 18 218 110 HOH HOH B . R 4 HOH 19 219 50 HOH HOH B . R 4 HOH 20 220 24 HOH HOH B . R 4 HOH 21 221 34 HOH HOH B . R 4 HOH 22 222 10 HOH HOH B . R 4 HOH 23 223 27 HOH HOH B . R 4 HOH 24 224 83 HOH HOH B . R 4 HOH 25 225 53 HOH HOH B . R 4 HOH 26 226 103 HOH HOH B . R 4 HOH 27 227 28 HOH HOH B . R 4 HOH 28 228 68 HOH HOH B . R 4 HOH 29 229 36 HOH HOH B . R 4 HOH 30 230 3 HOH HOH B . R 4 HOH 31 231 58 HOH HOH B . R 4 HOH 32 232 16 HOH HOH B . R 4 HOH 33 233 4 HOH HOH B . R 4 HOH 34 234 59 HOH HOH B . R 4 HOH 35 235 66 HOH HOH B . R 4 HOH 36 236 88 HOH HOH B . R 4 HOH 37 237 65 HOH HOH B . R 4 HOH 38 238 13 HOH HOH B . R 4 HOH 39 239 75 HOH HOH B . R 4 HOH 40 240 17 HOH HOH B . R 4 HOH 41 241 73 HOH HOH B . R 4 HOH 42 242 35 HOH HOH B . R 4 HOH 43 243 26 HOH HOH B . R 4 HOH 44 244 55 HOH HOH B . R 4 HOH 45 245 94 HOH HOH B . R 4 HOH 46 246 116 HOH HOH B . R 4 HOH 47 247 15 HOH HOH B . R 4 HOH 48 248 92 HOH HOH B . R 4 HOH 49 249 71 HOH HOH B . R 4 HOH 50 250 97 HOH HOH B . R 4 HOH 51 251 91 HOH HOH B . R 4 HOH 52 252 11 HOH HOH B . R 4 HOH 53 253 54 HOH HOH B . R 4 HOH 54 254 76 HOH HOH B . R 4 HOH 55 255 77 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3090 ? 1 MORE -13 ? 1 'SSA (A^2)' 5270 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 102 ? D MG . 2 1 A HOH 251 ? Q HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 6 ? A C 6 ? 1_555 MG ? M MG . ? B MG 104 ? 2_565 O ? Q HOH . ? A HOH 247 ? 3_455 39.9 ? 2 OP1 ? A C 6 ? A C 6 ? 1_555 MG ? M MG . ? B MG 104 ? 2_565 OP1 ? B C 6 ? B C 6 ? 1_555 31.9 ? 3 O ? Q HOH . ? A HOH 247 ? 3_455 MG ? M MG . ? B MG 104 ? 2_565 OP1 ? B C 6 ? B C 6 ? 1_555 9.2 ? 4 OP1 ? A C 6 ? A C 6 ? 1_555 MG ? M MG . ? B MG 104 ? 2_565 O ? R HOH . ? B HOH 247 ? 1_555 22.9 ? 5 O ? Q HOH . ? A HOH 247 ? 3_455 MG ? M MG . ? B MG 104 ? 2_565 O ? R HOH . ? B HOH 247 ? 1_555 18.0 ? 6 OP1 ? B C 6 ? B C 6 ? 1_555 MG ? M MG . ? B MG 104 ? 2_565 O ? R HOH . ? B HOH 247 ? 1_555 12.6 ? 7 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 79.5 ? 8 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O3D ? C GP3 . ? A GP3 101 ? 1_555 0.0 ? 9 O2D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O3D ? C GP3 . ? A GP3 101 ? 1_555 79.5 ? 10 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 79.5 ? 11 O2D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 0.0 ? 12 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 79.5 ? 13 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O2B ? C GP3 . ? A GP3 101 ? 1_555 93.4 ? 14 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O3B ? C GP3 . ? A GP3 101 ? 1_555 85.5 ? 15 O2B ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O3B ? C GP3 . ? A GP3 101 ? 1_555 56.8 ? 16 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O2G ? C GP3 . ? A GP3 101 ? 1_555 127.7 ? 17 O2B ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O2G ? C GP3 . ? A GP3 101 ? 1_555 93.9 ? 18 O3B ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O2G ? C GP3 . ? A GP3 101 ? 1_555 57.1 ? 19 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 60.9 ? 20 O2B ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 152.9 ? 21 O3B ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 108.8 ? 22 O2G ? C GP3 . ? A GP3 101 ? 1_555 MG ? P MG . ? B MG 107 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 95.6 ? 23 O3D ? J GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? J GP3 . ? B GP3 101 ? 1_555 78.4 ? 24 O3D ? J GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O3D ? J GP3 . ? B GP3 101 ? 2_565 100.0 ? 25 O2D ? J GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O3D ? J GP3 . ? B GP3 101 ? 2_565 112.2 ? 26 O3D ? J GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? J GP3 . ? B GP3 101 ? 3_455 113.8 ? 27 O2D ? J GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? J GP3 . ? B GP3 101 ? 3_455 96.4 ? 28 O3D ? J GP3 . ? B GP3 101 ? 2_565 MG ? D MG . ? A MG 102 ? 1_555 O2D ? J GP3 . ? B GP3 101 ? 3_455 139.5 ? 29 O ? Q HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 223 ? 1_555 90.9 ? 30 O ? Q HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 253 ? 1_555 84.1 ? 31 O ? Q HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 253 ? 1_555 93.2 ? 32 O ? Q HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 216 ? 1_555 102.0 ? 33 O ? Q HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 216 ? 1_555 93.3 ? 34 O ? Q HOH . ? A HOH 253 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 216 ? 1_555 171.0 ? 35 O ? Q HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 222 ? 1_555 91.4 ? 36 O ? Q HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 222 ? 1_555 177.0 ? 37 O ? Q HOH . ? A HOH 253 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 222 ? 1_555 85.3 ? 38 O ? R HOH . ? B HOH 216 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 222 ? 1_555 87.9 ? 39 O ? Q HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 252 ? 1_555 175.2 ? 40 O ? Q HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 252 ? 1_555 85.2 ? 41 O ? Q HOH . ? A HOH 253 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 252 ? 1_555 93.3 ? 42 O ? R HOH . ? B HOH 216 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 252 ? 1_555 81.1 ? 43 O ? R HOH . ? B HOH 222 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 252 ? 1_555 92.4 ? 44 O ? Q HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? Q HOH . ? A HOH 227 ? 3_455 91.7 ? 45 O ? Q HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 93.6 ? 46 O ? Q HOH . ? A HOH 227 ? 3_455 MG ? F MG . ? A MG 104 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 88.0 ? 47 O ? Q HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 232 ? 1_555 84.1 ? 48 O ? Q HOH . ? A HOH 227 ? 3_455 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 232 ? 1_555 175.2 ? 49 O ? Q HOH . ? A HOH 236 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 232 ? 1_555 94.6 ? 50 O ? Q HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 240 ? 1_555 87.2 ? 51 O ? Q HOH . ? A HOH 227 ? 3_455 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 240 ? 1_555 86.3 ? 52 O ? Q HOH . ? A HOH 236 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 240 ? 1_555 174.3 ? 53 O ? R HOH . ? B HOH 232 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 240 ? 1_555 91.1 ? 54 O ? Q HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 247 ? 1_555 172.0 ? 55 O ? Q HOH . ? A HOH 227 ? 3_455 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 247 ? 1_555 94.9 ? 56 O ? Q HOH . ? A HOH 236 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 247 ? 1_555 91.0 ? 57 O ? R HOH . ? B HOH 232 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 247 ? 1_555 89.1 ? 58 O ? R HOH . ? B HOH 240 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? R HOH . ? B HOH 247 ? 1_555 88.7 ? 59 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 222 ? 1_555 89.7 ? 60 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 242 ? 1_555 101.9 ? 61 O ? Q HOH . ? A HOH 222 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 242 ? 1_555 101.0 ? 62 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 248 ? 1_555 170.8 ? 63 O ? Q HOH . ? A HOH 222 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 248 ? 1_555 95.9 ? 64 O ? Q HOH . ? A HOH 242 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 248 ? 1_555 84.1 ? 65 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 255 ? 1_555 91.9 ? 66 O ? Q HOH . ? A HOH 222 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 255 ? 1_555 89.5 ? 67 O ? Q HOH . ? A HOH 242 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 255 ? 1_555 162.6 ? 68 O ? Q HOH . ? A HOH 248 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 255 ? 1_555 81.0 ? 69 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 257 ? 1_555 89.6 ? 70 O ? Q HOH . ? A HOH 222 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 257 ? 1_555 177.6 ? 71 O ? Q HOH . ? A HOH 242 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 257 ? 1_555 81.4 ? 72 O ? Q HOH . ? A HOH 248 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 257 ? 1_555 84.5 ? 73 O ? Q HOH . ? A HOH 255 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 257 ? 1_555 88.2 ? 74 O ? Q HOH . ? A HOH 215 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 79.8 ? 75 O ? Q HOH . ? A HOH 215 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? Q HOH . ? A HOH 256 ? 1_555 85.1 ? 76 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? Q HOH . ? A HOH 256 ? 1_555 86.8 ? 77 O ? Q HOH . ? A HOH 215 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? R HOH . ? B HOH 205 ? 1_555 74.4 ? 78 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? R HOH . ? B HOH 205 ? 1_555 88.5 ? 79 O ? Q HOH . ? A HOH 256 ? 1_555 MG ? H MG . ? A MG 106 ? 1_555 O ? R HOH . ? B HOH 205 ? 1_555 159.5 ? 80 O2A ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O2B ? J GP3 . ? B GP3 101 ? 1_555 91.3 ? 81 O2A ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O3B ? J GP3 . ? B GP3 101 ? 1_555 85.8 ? 82 O2B ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O3B ? J GP3 . ? B GP3 101 ? 1_555 56.8 ? 83 O2A ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O2G ? J GP3 . ? B GP3 101 ? 1_555 128.4 ? 84 O2B ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O2G ? J GP3 . ? B GP3 101 ? 1_555 94.7 ? 85 O3B ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O2G ? J GP3 . ? B GP3 101 ? 1_555 56.7 ? 86 O2A ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O ? R HOH . ? B HOH 201 ? 1_555 63.0 ? 87 O2B ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O ? R HOH . ? B HOH 201 ? 1_555 152.7 ? 88 O3B ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O ? R HOH . ? B HOH 201 ? 1_555 109.0 ? 89 O2G ? J GP3 . ? B GP3 101 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 O ? R HOH . ? B HOH 201 ? 1_555 94.8 ? 90 O ? Q HOH . ? A HOH 207 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 212 ? 1_555 77.6 ? 91 O ? Q HOH . ? A HOH 207 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 217 ? 1_555 89.8 ? 92 O ? R HOH . ? B HOH 212 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 217 ? 1_555 76.7 ? 93 O ? Q HOH . ? A HOH 207 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 253 ? 1_555 159.9 ? 94 O ? R HOH . ? B HOH 212 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 253 ? 1_555 83.2 ? 95 O ? R HOH . ? B HOH 217 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O ? R HOH . ? B HOH 253 ? 1_555 80.2 ? 96 O ? Q HOH . ? A HOH 232 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? Q HOH . ? A HOH 244 ? 1_555 89.3 ? 97 O ? Q HOH . ? A HOH 232 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? Q HOH . ? A HOH 247 ? 1_555 90.3 ? 98 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? Q HOH . ? A HOH 247 ? 1_555 88.0 ? 99 O ? Q HOH . ? A HOH 232 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 203 ? 1_555 83.3 ? 100 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 203 ? 1_555 86.2 ? 101 O ? Q HOH . ? A HOH 247 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 203 ? 1_555 171.4 ? 102 O ? Q HOH . ? A HOH 232 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 230 ? 2_565 173.4 ? 103 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 230 ? 2_565 87.5 ? 104 O ? Q HOH . ? A HOH 247 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 230 ? 2_565 95.4 ? 105 O ? R HOH . ? B HOH 203 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 230 ? 2_565 90.8 ? 106 O ? Q HOH . ? A HOH 232 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 233 ? 1_555 95.3 ? 107 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 233 ? 1_555 175.3 ? 108 O ? Q HOH . ? A HOH 247 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 233 ? 1_555 91.4 ? 109 O ? R HOH . ? B HOH 203 ? 1_555 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 233 ? 1_555 94.9 ? 110 O ? R HOH . ? B HOH 230 ? 2_565 MG ? L MG . ? B MG 103 ? 1_555 O ? R HOH . ? B HOH 233 ? 1_555 88.0 ? 111 O ? R HOH . ? B HOH 202 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 225 ? 1_555 91.3 ? 112 O ? R HOH . ? B HOH 202 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 239 ? 1_555 101.7 ? 113 O ? R HOH . ? B HOH 225 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 239 ? 1_555 97.2 ? 114 O ? R HOH . ? B HOH 202 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 246 ? 1_555 177.8 ? 115 O ? R HOH . ? B HOH 225 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 246 ? 1_555 87.4 ? 116 O ? R HOH . ? B HOH 239 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 246 ? 1_555 80.2 ? 117 O ? R HOH . ? B HOH 202 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 254 ? 1_555 91.1 ? 118 O ? R HOH . ? B HOH 225 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 254 ? 1_555 94.4 ? 119 O ? R HOH . ? B HOH 239 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 254 ? 1_555 162.4 ? 120 O ? R HOH . ? B HOH 246 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 254 ? 1_555 87.3 ? 121 O ? R HOH . ? B HOH 202 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 255 ? 1_555 90.8 ? 122 O ? R HOH . ? B HOH 225 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 255 ? 1_555 176.9 ? 123 O ? R HOH . ? B HOH 239 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 255 ? 1_555 80.0 ? 124 O ? R HOH . ? B HOH 246 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 255 ? 1_555 90.7 ? 125 O ? R HOH . ? B HOH 254 ? 1_555 MG ? N MG . ? B MG 105 ? 1_555 O ? R HOH . ? B HOH 255 ? 1_555 88.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-08 2 'Structure model' 1 1 2021-10-20 3 'Structure model' 1 2 2022-03-23 4 'Structure model' 1 3 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation_author 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7KUL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2A B GP3 101 ? ? O B HOH 201 ? ? 2.17 2 1 O2A A GP3 101 ? ? O A HOH 201 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 254 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 254 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A U 7 ? ? P A U 7 ? ? OP2 A U 7 ? ? 99.92 105.70 -5.78 0.90 N 2 1 "O5'" A DG 14 ? ? P A DG 14 ? ? OP2 A DG 14 ? ? 97.91 105.70 -7.79 0.90 N 3 1 "O5'" B U 7 ? ? P B U 7 ? ? OP2 B U 7 ? ? 99.11 105.70 -6.59 0.90 N 4 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 97.89 105.70 -7.81 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 GP3 N9A N Y N 148 GP3 C8A C Y N 149 GP3 N7A N Y N 150 GP3 C5A C Y N 151 GP3 C6A C N N 152 GP3 O6A O N N 153 GP3 N1A N N N 154 GP3 C2A C N N 155 GP3 N2A N N N 156 GP3 N3A N N N 157 GP3 C4A C Y N 158 GP3 O5D O N N 159 GP3 C5D C N N 160 GP3 C4D C N R 161 GP3 O4D O N N 162 GP3 C3D C N S 163 GP3 O3D O N N 164 GP3 C2D C N R 165 GP3 O2D O N N 166 GP3 C1D C N R 167 GP3 PA P N R 168 GP3 O1A O N N 169 GP3 O2A O N N 170 GP3 O3A O N N 171 GP3 PB P N N 172 GP3 O1B O N N 173 GP3 O2B O N N 174 GP3 O3B O N N 175 GP3 PG P N R 176 GP3 O1G O N N 177 GP3 O2G O N N 178 GP3 O5E O N N 179 GP3 C5E C N N 180 GP3 C4E C N R 181 GP3 O4E O N N 182 GP3 C3E C N S 183 GP3 O3E O N N 184 GP3 C2E C N R 185 GP3 O2E O N N 186 GP3 C1E C N R 187 GP3 N9B N Y N 188 GP3 C8B C Y N 189 GP3 N7B N Y N 190 GP3 C5B C Y N 191 GP3 C6B C N N 192 GP3 O6B O N N 193 GP3 N1B N N N 194 GP3 C2B C N N 195 GP3 N2B N N N 196 GP3 N3B N N N 197 GP3 C4B C Y N 198 GP3 H8A H N N 199 GP3 H1A H N N 200 GP3 H21A H N N 201 GP3 H22A H N N 202 GP3 H51A H N N 203 GP3 H52A H N N 204 GP3 H4D H N N 205 GP3 H3D H N N 206 GP3 HO3A H N N 207 GP3 H2D H N N 208 GP3 HO2A H N N 209 GP3 H1D H N N 210 GP3 HOA2 H N N 211 GP3 HOB2 H N N 212 GP3 HOG2 H N N 213 GP3 H51B H N N 214 GP3 H52B H N N 215 GP3 H4E H N N 216 GP3 H3E H N N 217 GP3 HO3B H N N 218 GP3 H2E H N N 219 GP3 HO2B H N N 220 GP3 H1E H N N 221 GP3 H8B H N N 222 GP3 H1B H N N 223 GP3 H21B H N N 224 GP3 H22B H N N 225 HOH O O N N 226 HOH H1 H N N 227 HOH H2 H N N 228 LCC "O5'" O N N 229 LCC "C5'" C N N 230 LCC "C4'" C N R 231 LCC "O4'" O N N 232 LCC "C1'" C N R 233 LCC N1 N N N 234 LCC C6 C N N 235 LCC C5 C N N 236 LCC C5M C N N 237 LCC C4 C N N 238 LCC N4 N N N 239 LCC N3 N N N 240 LCC C2 C N N 241 LCC O2 O N N 242 LCC "C3'" C N S 243 LCC "C2'" C N R 244 LCC "O2'" O N N 245 LCC "O3'" O N N 246 LCC "C6'" C N N 247 LCC P P N N 248 LCC O1P O N N 249 LCC O2P O N N 250 LCC OXT O N N 251 LCC "H5'1" H N N 252 LCC "H5'2" H N N 253 LCC "H1'" H N N 254 LCC H6 H N N 255 LCC H5M1 H N N 256 LCC H5M2 H N N 257 LCC H5M3 H N N 258 LCC H41 H N N 259 LCC H42 H N N 260 LCC "H3'" H N N 261 LCC "H2'1" H N N 262 LCC H3T H N N 263 LCC "H6'1" H N N 264 LCC "H6'2" H N N 265 LCC H1P H N N 266 LCC HXT H N N 267 LCG P P N N 268 LCG OP1 O N N 269 LCG "O5'" O N N 270 LCG "C5'" C N N 271 LCG "C3'" C N S 272 LCG "C6'" C N N 273 LCG N9 N Y N 274 LCG C8 C Y N 275 LCG C4 C Y N 276 LCG N7 N Y N 277 LCG C5 C Y N 278 LCG C6 C N N 279 LCG "C2'" C N R 280 LCG O6 O N N 281 LCG "C4'" C N R 282 LCG "C1'" C N R 283 LCG C2 C N N 284 LCG N1 N N N 285 LCG "O4'" O N N 286 LCG OP2 O N N 287 LCG N2 N N N 288 LCG N3 N N N 289 LCG "O2'" O N N 290 LCG "O3'" O N N 291 LCG OP3 O N N 292 LCG "H5'" H N N 293 LCG "H5''" H N N 294 LCG "H3'" H N N 295 LCG "H6'1" H N N 296 LCG "H6'2" H N N 297 LCG H8 H N N 298 LCG "H2'" H N N 299 LCG "H1'" H N N 300 LCG H1 H N N 301 LCG HOP2 H N N 302 LCG H21 H N N 303 LCG H22 H N N 304 LCG "HO3'" H N N 305 LCG HOP3 H N N 306 LKC N1 N N N 307 LKC C2 C N N 308 LKC N3 N N N 309 LKC C4 C N N 310 LKC C5 C N N 311 LKC C6 C N N 312 LKC O2 O N N 313 LKC N4 N N N 314 LKC "C1'" C N R 315 LKC "C2'" C N R 316 LKC "C3'" C N S 317 LKC "C4'" C N S 318 LKC "O4'" O N N 319 LKC "O3'" O N N 320 LKC "C5'" C N N 321 LKC "O5'" O N N 322 LKC C5A C N N 323 LKC "O2'" O N N 324 LKC "C6'" C N N 325 LKC H6 H N N 326 LKC H41 H N N 327 LKC H42 H N N 328 LKC "H1'" H N N 329 LKC "H2'1" H N N 330 LKC "H3'" H N N 331 LKC H3T H N N 332 LKC "H5'1" H N N 333 LKC "H5'2" H N N 334 LKC H5T H N N 335 LKC H5M1 H N N 336 LKC H5M2 H N N 337 LKC H5M3 H N N 338 LKC "H6'1" H N N 339 LKC "H6'2" H N N 340 MG MG MG N N 341 U OP3 O N N 342 U P P N N 343 U OP1 O N N 344 U OP2 O N N 345 U "O5'" O N N 346 U "C5'" C N N 347 U "C4'" C N R 348 U "O4'" O N N 349 U "C3'" C N S 350 U "O3'" O N N 351 U "C2'" C N R 352 U "O2'" O N N 353 U "C1'" C N R 354 U N1 N N N 355 U C2 C N N 356 U O2 O N N 357 U N3 N N N 358 U C4 C N N 359 U O4 O N N 360 U C5 C N N 361 U C6 C N N 362 U HOP3 H N N 363 U HOP2 H N N 364 U "H5'" H N N 365 U "H5''" H N N 366 U "H4'" H N N 367 U "H3'" H N N 368 U "HO3'" H N N 369 U "H2'" H N N 370 U "HO2'" H N N 371 U "H1'" H N N 372 U H3 H N N 373 U H5 H N N 374 U H6 H N N 375 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DG OP3 P sing N N 76 DG OP3 HOP3 sing N N 77 DG P OP1 doub N N 78 DG P OP2 sing N N 79 DG P "O5'" sing N N 80 DG OP2 HOP2 sing N N 81 DG "O5'" "C5'" sing N N 82 DG "C5'" "C4'" sing N N 83 DG "C5'" "H5'" sing N N 84 DG "C5'" "H5''" sing N N 85 DG "C4'" "O4'" sing N N 86 DG "C4'" "C3'" sing N N 87 DG "C4'" "H4'" sing N N 88 DG "O4'" "C1'" sing N N 89 DG "C3'" "O3'" sing N N 90 DG "C3'" "C2'" sing N N 91 DG "C3'" "H3'" sing N N 92 DG "O3'" "HO3'" sing N N 93 DG "C2'" "C1'" sing N N 94 DG "C2'" "H2'" sing N N 95 DG "C2'" "H2''" sing N N 96 DG "C1'" N9 sing N N 97 DG "C1'" "H1'" sing N N 98 DG N9 C8 sing Y N 99 DG N9 C4 sing Y N 100 DG C8 N7 doub Y N 101 DG C8 H8 sing N N 102 DG N7 C5 sing Y N 103 DG C5 C6 sing N N 104 DG C5 C4 doub Y N 105 DG C6 O6 doub N N 106 DG C6 N1 sing N N 107 DG N1 C2 sing N N 108 DG N1 H1 sing N N 109 DG C2 N2 sing N N 110 DG C2 N3 doub N N 111 DG N2 H21 sing N N 112 DG N2 H22 sing N N 113 DG N3 C4 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 GP3 N9A C8A sing Y N 155 GP3 N9A C4A sing Y N 156 GP3 N9A C1D sing N N 157 GP3 C8A N7A doub Y N 158 GP3 C8A H8A sing N N 159 GP3 N7A C5A sing Y N 160 GP3 C5A C6A sing N N 161 GP3 C5A C4A doub Y N 162 GP3 C6A O6A doub N N 163 GP3 C6A N1A sing N N 164 GP3 N1A C2A sing N N 165 GP3 N1A H1A sing N N 166 GP3 C2A N2A sing N N 167 GP3 C2A N3A doub N N 168 GP3 N2A H21A sing N N 169 GP3 N2A H22A sing N N 170 GP3 N3A C4A sing N N 171 GP3 O5D C5D sing N N 172 GP3 O5D PA sing N N 173 GP3 C5D C4D sing N N 174 GP3 C5D H51A sing N N 175 GP3 C5D H52A sing N N 176 GP3 C4D O4D sing N N 177 GP3 C4D C3D sing N N 178 GP3 C4D H4D sing N N 179 GP3 O4D C1D sing N N 180 GP3 C3D O3D sing N N 181 GP3 C3D C2D sing N N 182 GP3 C3D H3D sing N N 183 GP3 O3D HO3A sing N N 184 GP3 C2D O2D sing N N 185 GP3 C2D C1D sing N N 186 GP3 C2D H2D sing N N 187 GP3 O2D HO2A sing N N 188 GP3 C1D H1D sing N N 189 GP3 PA O1A doub N N 190 GP3 PA O2A sing N N 191 GP3 PA O3A sing N N 192 GP3 O2A HOA2 sing N N 193 GP3 O3A PB sing N N 194 GP3 PB O1B doub N N 195 GP3 PB O2B sing N N 196 GP3 PB O3B sing N N 197 GP3 O2B HOB2 sing N N 198 GP3 O3B PG sing N N 199 GP3 PG O1G doub N N 200 GP3 PG O2G sing N N 201 GP3 PG O5E sing N N 202 GP3 O2G HOG2 sing N N 203 GP3 O5E C5E sing N N 204 GP3 C5E C4E sing N N 205 GP3 C5E H51B sing N N 206 GP3 C5E H52B sing N N 207 GP3 C4E O4E sing N N 208 GP3 C4E C3E sing N N 209 GP3 C4E H4E sing N N 210 GP3 O4E C1E sing N N 211 GP3 C3E O3E sing N N 212 GP3 C3E C2E sing N N 213 GP3 C3E H3E sing N N 214 GP3 O3E HO3B sing N N 215 GP3 C2E O2E sing N N 216 GP3 C2E C1E sing N N 217 GP3 C2E H2E sing N N 218 GP3 O2E HO2B sing N N 219 GP3 C1E N9B sing N N 220 GP3 C1E H1E sing N N 221 GP3 N9B C8B sing Y N 222 GP3 N9B C4B sing Y N 223 GP3 C8B N7B doub Y N 224 GP3 C8B H8B sing N N 225 GP3 N7B C5B sing Y N 226 GP3 C5B C6B sing N N 227 GP3 C5B C4B doub Y N 228 GP3 C6B O6B doub N N 229 GP3 C6B N1B sing N N 230 GP3 N1B C2B sing N N 231 GP3 N1B H1B sing N N 232 GP3 C2B N2B sing N N 233 GP3 C2B N3B doub N N 234 GP3 N2B H21B sing N N 235 GP3 N2B H22B sing N N 236 GP3 N3B C4B sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 LCC "O5'" "C5'" sing N N 240 LCC "O5'" P sing N N 241 LCC "C5'" "C4'" sing N N 242 LCC "C5'" "H5'1" sing N N 243 LCC "C5'" "H5'2" sing N N 244 LCC "C4'" "O4'" sing N N 245 LCC "C4'" "C3'" sing N N 246 LCC "C4'" "C6'" sing N N 247 LCC "O4'" "C1'" sing N N 248 LCC "C1'" N1 sing N N 249 LCC "C1'" "C2'" sing N N 250 LCC "C1'" "H1'" sing N N 251 LCC N1 C6 sing N N 252 LCC N1 C2 sing N N 253 LCC C6 C5 doub N N 254 LCC C6 H6 sing N N 255 LCC C5 C5M sing N N 256 LCC C5 C4 sing N N 257 LCC C5M H5M1 sing N N 258 LCC C5M H5M2 sing N N 259 LCC C5M H5M3 sing N N 260 LCC C4 N4 sing N N 261 LCC C4 N3 doub N N 262 LCC N4 H41 sing N N 263 LCC N4 H42 sing N N 264 LCC N3 C2 sing N N 265 LCC C2 O2 doub N N 266 LCC "C3'" "C2'" sing N N 267 LCC "C3'" "O3'" sing N N 268 LCC "C3'" "H3'" sing N N 269 LCC "C2'" "O2'" sing N N 270 LCC "C2'" "H2'1" sing N N 271 LCC "O2'" "C6'" sing N N 272 LCC "O3'" H3T sing N N 273 LCC "C6'" "H6'1" sing N N 274 LCC "C6'" "H6'2" sing N N 275 LCC P O1P sing N N 276 LCC P O2P doub N N 277 LCC P OXT sing N N 278 LCC O1P H1P sing N N 279 LCC OXT HXT sing N N 280 LCG P OP1 doub N N 281 LCG P "O5'" sing N N 282 LCG P OP2 sing N N 283 LCG P OP3 sing N N 284 LCG "O5'" "C5'" sing N N 285 LCG "C5'" "C4'" sing N N 286 LCG "C5'" "H5'" sing N N 287 LCG "C5'" "H5''" sing N N 288 LCG "C3'" "C2'" sing N N 289 LCG "C3'" "C4'" sing N N 290 LCG "C3'" "O3'" sing N N 291 LCG "C3'" "H3'" sing N N 292 LCG "C6'" "C4'" sing N N 293 LCG "C6'" "O2'" sing N N 294 LCG "C6'" "H6'1" sing N N 295 LCG "C6'" "H6'2" sing N N 296 LCG N9 C8 sing Y N 297 LCG N9 C4 sing Y N 298 LCG N9 "C1'" sing N N 299 LCG C8 N7 doub Y N 300 LCG C8 H8 sing N N 301 LCG C4 C5 doub Y N 302 LCG C4 N3 sing N N 303 LCG N7 C5 sing Y N 304 LCG C5 C6 sing N N 305 LCG C6 O6 doub N N 306 LCG C6 N1 sing N N 307 LCG "C2'" "C1'" sing N N 308 LCG "C2'" "O2'" sing N N 309 LCG "C2'" "H2'" sing N N 310 LCG "C4'" "O4'" sing N N 311 LCG "C1'" "O4'" sing N N 312 LCG "C1'" "H1'" sing N N 313 LCG C2 N1 sing N N 314 LCG C2 N2 sing N N 315 LCG C2 N3 doub N N 316 LCG N1 H1 sing N N 317 LCG OP2 HOP2 sing N N 318 LCG N2 H21 sing N N 319 LCG N2 H22 sing N N 320 LCG "O3'" "HO3'" sing N N 321 LCG OP3 HOP3 sing N N 322 LKC N1 C2 sing N N 323 LKC N1 C6 sing N N 324 LKC N1 "C1'" sing N N 325 LKC C2 N3 sing N N 326 LKC C2 O2 doub N N 327 LKC N3 C4 doub N N 328 LKC C4 C5 sing N N 329 LKC C4 N4 sing N N 330 LKC C5 C6 doub N N 331 LKC C5 C5A sing N N 332 LKC C6 H6 sing N N 333 LKC N4 H41 sing N N 334 LKC N4 H42 sing N N 335 LKC "C1'" "C2'" sing N N 336 LKC "C1'" "O4'" sing N N 337 LKC "C1'" "H1'" sing N N 338 LKC "C2'" "C3'" sing N N 339 LKC "C2'" "O2'" sing N N 340 LKC "C2'" "H2'1" sing N N 341 LKC "C3'" "C4'" sing N N 342 LKC "C3'" "O3'" sing N N 343 LKC "C3'" "H3'" sing N N 344 LKC "C4'" "O4'" sing N N 345 LKC "C4'" "C5'" sing N N 346 LKC "C4'" "C6'" sing N N 347 LKC "O3'" H3T sing N N 348 LKC "C5'" "O5'" sing N N 349 LKC "C5'" "H5'1" sing N N 350 LKC "C5'" "H5'2" sing N N 351 LKC "O5'" H5T sing N N 352 LKC C5A H5M1 sing N N 353 LKC C5A H5M2 sing N N 354 LKC C5A H5M3 sing N N 355 LKC "O2'" "C6'" sing N N 356 LKC "C6'" "H6'1" sing N N 357 LKC "C6'" "H6'2" sing N N 358 U OP3 P sing N N 359 U OP3 HOP3 sing N N 360 U P OP1 doub N N 361 U P OP2 sing N N 362 U P "O5'" sing N N 363 U OP2 HOP2 sing N N 364 U "O5'" "C5'" sing N N 365 U "C5'" "C4'" sing N N 366 U "C5'" "H5'" sing N N 367 U "C5'" "H5''" sing N N 368 U "C4'" "O4'" sing N N 369 U "C4'" "C3'" sing N N 370 U "C4'" "H4'" sing N N 371 U "O4'" "C1'" sing N N 372 U "C3'" "O3'" sing N N 373 U "C3'" "C2'" sing N N 374 U "C3'" "H3'" sing N N 375 U "O3'" "HO3'" sing N N 376 U "C2'" "O2'" sing N N 377 U "C2'" "C1'" sing N N 378 U "C2'" "H2'" sing N N 379 U "O2'" "HO2'" sing N N 380 U "C1'" N1 sing N N 381 U "C1'" "H1'" sing N N 382 U N1 C2 sing N N 383 U N1 C6 sing N N 384 U C2 O2 doub N N 385 U C2 N3 sing N N 386 U N3 C4 sing N N 387 U N3 H3 sing N N 388 U C4 O4 doub N N 389 U C4 C5 sing N N 390 U C5 C6 doub N N 391 U C5 H5 sing N N 392 U C6 H6 sing N N 393 # _ndb_struct_conf_na.entry_id 7KUL _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.261 -0.208 0.005 -5.502 -13.358 -0.914 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.078 -0.061 0.017 3.037 -8.704 -2.822 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.209 -0.159 -0.005 8.087 -16.589 0.672 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.058 -0.121 0.127 0.861 -14.773 3.519 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.178 -0.263 0.064 -1.056 -12.028 2.607 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.205 -0.293 0.146 0.789 -12.211 2.604 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 -0.050 -0.108 0.099 -2.490 -14.982 2.854 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.211 -0.125 -0.040 -8.675 -16.572 0.741 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.204 -0.073 0.014 -3.743 -8.313 -3.161 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.299 -0.201 -0.011 4.863 -12.552 -1.163 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.471 -1.231 3.074 -1.594 3.837 31.493 -2.897 0.591 2.927 7.031 2.920 31.759 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.570 -1.405 3.124 0.600 4.148 33.807 -3.014 -0.885 2.946 7.099 -1.026 34.059 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.200 -1.718 3.400 -2.243 11.832 30.391 -5.005 -0.014 2.577 21.537 4.082 32.638 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.352 -1.222 3.268 -0.784 9.971 29.422 -4.089 0.515 2.726 18.954 1.491 31.039 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 -0.013 -1.397 3.179 -0.527 15.284 34.853 -3.883 -0.040 2.382 24.132 0.832 37.965 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 0.347 -1.241 3.304 1.489 10.275 29.210 -4.214 -0.376 2.734 19.610 -2.841 30.962 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.190 -1.741 3.377 2.430 11.501 30.356 -5.008 0.062 2.572 20.999 -4.437 32.503 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.536 -1.386 3.136 -0.942 4.215 34.255 -2.947 0.767 2.962 7.121 1.591 34.518 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.423 -1.242 3.068 1.816 3.850 31.118 -2.959 -0.468 2.916 7.135 -3.365 31.401 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 1607034 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GP3 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GP3 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "DIGUANOSINE-5'-TRIPHOSPHATE" GP3 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5UEE _pdbx_initial_refinement_model.details ? #