data_7KUP # _entry.id 7KUP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7KUP pdb_00007kup 10.2210/pdb7kup/pdb WWPDB D_1000253081 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KUP _pdbx_database_status.recvd_initial_deposition_date 2020-11-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Giurgiu, C.' 2 0000-0003-0145-0110 'Szostak, J.W.' 3 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 22925 _citation.page_last 22932 _citation.title 'Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202109714 _citation.pdbx_database_id_PubMed 34428345 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Giurgiu, C.' 1 0000-0003-0145-0110 primary 'Fang, Z.' 2 ? primary 'Aitken, H.R.M.' 3 ? primary 'Kim, S.C.' 4 ? primary 'Pazienza, L.' 5 ? primary 'Mittal, S.' 6 ? primary 'Szostak, J.W.' 7 0000-0003-4131-1203 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7KUP _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.972 _cell.length_a_esd ? _cell.length_b 48.972 _cell.length_b_esd ? _cell.length_c 82.204 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3'" 4446.850 2 ? ? ? ? 2 non-polymer syn "DIGUANOSINE-5'-TRIPHOSPHATE" 788.406 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 4 water nat water 18.015 148 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LKC)(LCC)(LCC)(LCG)ACUUAAGUC(OMG)' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LKC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 OMG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7KUP _struct_ref.pdbx_db_accession 7KUP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7KUP A 1 ? 14 ? 7KUP 1 ? 19 ? 1 19 2 1 7KUP B 1 ? 14 ? 7KUP 1 ? 19 ? 1 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GP3 non-polymer . "DIGUANOSINE-5'-TRIPHOSPHATE" ? 'C20 H27 N10 O18 P3' 788.406 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LKC 'RNA linking' . '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' ? 'C11 H15 N3 O5' 269.254 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KUP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Sodium acetate trihydrate pH 4.6, 2.0 M Sodium formate, 50 mM Magnesium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-06-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.977408 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.977408 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7KUP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.44 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21287 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 18.7 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 26.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.976 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.087 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star 0.997 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.44 _reflns_shell.d_res_low 1.46 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1017 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.497 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 15.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.916 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.512 _reflns_shell.pdbx_Rpim_I_all 0.122 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.985 _reflns_shell.pdbx_CC_star 0.996 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.001 _refine.aniso_B[1][2] 0.001 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.001 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.005 _refine.B_iso_max ? _refine.B_iso_mean 15.913 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KUP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.440 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18611 _refine.ls_number_reflns_R_free 889 _refine.ls_number_reflns_R_work 17722 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.413 _refine.ls_percent_reflns_R_free 4.777 _refine.ls_R_factor_all 0.200 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2182 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1986 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5UEE _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.075 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.986 _refine.overall_SU_ML 0.040 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 378 _refine_hist.pdbx_number_atoms_ligand 332 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 858 _refine_hist.d_res_high 1.440 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.028 0.018 794 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.031 0.025 356 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.208 2.140 1198 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.620 3.213 834 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.138 0.200 142 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.723 0.200 24 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.023 0.021 400 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.023 148 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.087 0.200 83 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.206 0.200 518 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.247 0.200 314 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.286 0.200 172 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.221 0.200 117 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.119 0.200 11 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.171 0.200 38 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.303 0.200 24 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.182 1.560 792 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.181 1.559 793 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 3.038 2.367 1198 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.038 2.367 1199 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.568 15.292 1156 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.209 14.514 1110 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.440 1.477 . . 30 599 40.8973 . . . 0.248 . 0.185 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.477 1.518 . . 34 680 47.2535 . . . 0.195 . 0.183 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.518 1.562 . . 23 799 56.6897 . . . 0.246 . 0.221 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.562 1.610 . . 51 1066 79.0517 . . . 0.295 . 0.250 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.610 1.663 . . 72 1310 98.2232 . . . 0.263 . 0.197 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.663 1.721 . . 47 1274 99.7734 . . . 0.255 . 0.205 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.721 1.786 . . 58 1250 100.0000 . . . 0.226 . 0.192 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.786 1.859 . . 69 1161 99.7567 . . . 0.180 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.859 1.942 . . 73 1146 100.0000 . . . 0.235 . 0.209 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.942 2.036 . . 54 1097 100.0000 . . . 0.222 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.036 2.146 . . 67 1017 100.0000 . . . 0.294 . 0.205 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.146 2.276 . . 58 998 100.0000 . . . 0.223 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.276 2.433 . . 45 946 100.0000 . . . 0.225 . 0.188 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.433 2.628 . . 41 865 100.0000 . . . 0.332 . 0.206 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.628 2.879 . . 30 832 99.8841 . . . 0.369 . 0.228 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.879 3.218 . . 19 743 99.4778 . . . 0.193 . 0.186 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.218 3.715 . . 45 650 99.2857 . . . 0.162 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.715 4.548 . . 28 566 99.0000 . . . 0.134 . 0.148 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.548 6.422 . . 32 442 100.0000 . . . 0.159 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.422 50 . . 13 281 98.9899 . . . 0.175 . . . . . . . . . . . . . # _struct.entry_id 7KUP _struct.title ;2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KUP _struct_keywords.text 'RNA, nonenzymatic RNA extension' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LKC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LKC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 9 1_555 ? ? ? ? ? ? ? 1.576 ? ? covale5 covale both ? A C 13 "O3'" ? ? ? 1_555 A OMG 14 P ? ? A C 17 A OMG 19 1_555 ? ? ? ? ? ? ? 1.555 ? ? covale6 covale both ? B LKC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LKC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale7 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale8 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale9 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 9 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale10 covale both ? B C 13 "O3'" ? ? ? 1_555 B OMG 14 P ? ? B C 17 B OMG 19 1_555 ? ? ? ? ? ? ? 1.555 ? ? metalc1 metalc ? ? C GP3 . O3D ? ? ? 1_555 I MG . MG ? ? A GP3 101 B MG 102 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc2 metalc ? ? C GP3 . O2D ? ? ? 1_555 I MG . MG ? ? A GP3 101 B MG 102 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc3 metalc ? ? C GP3 . O3D ? ? ? 1_555 I MG . MG ? ? A GP3 101 B MG 102 2_785 ? ? ? ? ? ? ? 2.400 ? ? metalc4 metalc ? ? C GP3 . O2D ? ? ? 1_555 I MG . MG ? ? A GP3 101 B MG 102 3_475 ? ? ? ? ? ? ? 2.506 ? ? metalc5 metalc ? ? C GP3 . O2A ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 104 1_555 ? ? ? ? ? ? ? 1.968 ? ? metalc6 metalc ? ? C GP3 . O2G ? ? ? 1_555 K MG . MG ? ? A GP3 101 B MG 104 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H GP3 . O3D ? ? A MG 102 B GP3 101 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 H GP3 . O2D ? ? A MG 102 B GP3 101 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 H GP3 . O3D ? ? A MG 102 B GP3 101 2_785 ? ? ? ? ? ? ? 2.412 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 H GP3 . O2D ? ? A MG 102 B GP3 101 3_475 ? ? ? ? ? ? ? 2.493 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 212 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 221 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 235 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 103 B HOH 238 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 103 B HOH 240 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 103 B HOH 269 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 H GP3 . O2A ? ? A MG 104 B GP3 101 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 H GP3 . O2G ? ? A MG 104 B GP3 101 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 104 B HOH 201 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 104 B HOH 202 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc21 metalc ? ? M HOH . O ? ? ? 1_555 K MG . MG ? ? A HOH 201 B MG 104 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc22 metalc ? ? M HOH . O ? ? ? 2_785 K MG . MG ? ? A HOH 202 B MG 104 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc23 metalc ? ? M HOH . O ? ? ? 1_555 J MG . MG ? ? A HOH 237 B MG 103 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc24 metalc ? ? M HOH . O ? ? ? 1_555 J MG . MG ? ? A HOH 241 B MG 103 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc25 metalc ? ? M HOH . O ? ? ? 1_555 L MG . MG ? ? A HOH 261 B MG 105 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc26 metalc ? ? M HOH . O ? ? ? 3_475 L MG . MG ? ? A HOH 261 B MG 105 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc27 metalc ? ? M HOH . O ? ? ? 1_555 J MG . MG ? ? A HOH 267 B MG 103 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc28 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 215 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc29 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 223 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc30 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 236 1_555 ? ? ? ? ? ? ? 2.092 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 9 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 9 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 12 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 12 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 15 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 15 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 15 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 16 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 16 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 17 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 17 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 17 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7KUP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.020420 _atom_sites.fract_transf_matrix[1][2] 0.011789 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023579 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012165 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 12 12 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.859 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LKC 1 1 1 LKC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 9 5 A A A . n A 1 6 C 6 10 6 C C A . n A 1 7 U 7 11 7 U U A . n A 1 8 U 8 12 8 U U A . n A 1 9 A 9 13 9 A A A . n A 1 10 A 10 14 10 A A A . n A 1 11 G 11 15 11 G G A . n A 1 12 U 12 16 12 U U A . n A 1 13 C 13 17 13 C C A . n A 1 14 OMG 14 19 14 OMG OMG A . n B 1 1 LKC 1 1 1 LKC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 9 5 A A B . n B 1 6 C 6 10 6 C C B . n B 1 7 U 7 11 7 U U B . n B 1 8 U 8 12 8 U U B . n B 1 9 A 9 13 9 A A B . n B 1 10 A 10 14 10 A A B . n B 1 11 G 11 15 11 G G B . n B 1 12 U 12 16 12 U U B . n B 1 13 C 13 17 13 C C B . n B 1 14 OMG 14 19 14 OMG OMG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GP3 1 101 101 GP3 GP3 A . D 3 MG 1 102 2 MG MG A . E 3 MG 1 103 3 MG MG A . F 3 MG 1 104 13 MG MG A . G 3 MG 1 105 14 MG MG A . H 2 GP3 1 101 101 GP3 GP3 B . I 3 MG 1 102 1 MG MG B . J 3 MG 1 103 4 MG MG B . K 3 MG 1 104 12 MG MG B . L 3 MG 1 105 15 MG MG B . M 4 HOH 1 201 86 HOH HOH A . M 4 HOH 2 202 85 HOH HOH A . M 4 HOH 3 203 132 HOH HOH A . M 4 HOH 4 204 84 HOH HOH A . M 4 HOH 5 205 68 HOH HOH A . M 4 HOH 6 206 51 HOH HOH A . M 4 HOH 7 207 56 HOH HOH A . M 4 HOH 8 208 65 HOH HOH A . M 4 HOH 9 209 151 HOH HOH A . M 4 HOH 10 210 105 HOH HOH A . M 4 HOH 11 211 55 HOH HOH A . M 4 HOH 12 212 4 HOH HOH A . M 4 HOH 13 213 75 HOH HOH A . M 4 HOH 14 214 23 HOH HOH A . M 4 HOH 15 215 83 HOH HOH A . M 4 HOH 16 216 48 HOH HOH A . M 4 HOH 17 217 49 HOH HOH A . M 4 HOH 18 218 119 HOH HOH A . M 4 HOH 19 219 120 HOH HOH A . M 4 HOH 20 220 131 HOH HOH A . M 4 HOH 21 221 5 HOH HOH A . M 4 HOH 22 222 67 HOH HOH A . M 4 HOH 23 223 66 HOH HOH A . M 4 HOH 24 224 44 HOH HOH A . M 4 HOH 25 225 24 HOH HOH A . M 4 HOH 26 226 35 HOH HOH A . M 4 HOH 27 227 144 HOH HOH A . M 4 HOH 28 228 30 HOH HOH A . M 4 HOH 29 229 14 HOH HOH A . M 4 HOH 30 230 46 HOH HOH A . M 4 HOH 31 231 59 HOH HOH A . M 4 HOH 32 232 106 HOH HOH A . M 4 HOH 33 233 114 HOH HOH A . M 4 HOH 34 234 153 HOH HOH A . M 4 HOH 35 235 1 HOH HOH A . M 4 HOH 36 236 28 HOH HOH A . M 4 HOH 37 237 11 HOH HOH A . M 4 HOH 38 238 140 HOH HOH A . M 4 HOH 39 239 26 HOH HOH A . M 4 HOH 40 240 25 HOH HOH A . M 4 HOH 41 241 12 HOH HOH A . M 4 HOH 42 242 22 HOH HOH A . M 4 HOH 43 243 118 HOH HOH A . M 4 HOH 44 244 13 HOH HOH A . M 4 HOH 45 245 37 HOH HOH A . M 4 HOH 46 246 93 HOH HOH A . M 4 HOH 47 247 96 HOH HOH A . M 4 HOH 48 248 80 HOH HOH A . M 4 HOH 49 249 138 HOH HOH A . M 4 HOH 50 250 79 HOH HOH A . M 4 HOH 51 251 125 HOH HOH A . M 4 HOH 52 252 31 HOH HOH A . M 4 HOH 53 253 33 HOH HOH A . M 4 HOH 54 254 50 HOH HOH A . M 4 HOH 55 255 137 HOH HOH A . M 4 HOH 56 256 45 HOH HOH A . M 4 HOH 57 257 102 HOH HOH A . M 4 HOH 58 258 54 HOH HOH A . M 4 HOH 59 259 36 HOH HOH A . M 4 HOH 60 260 121 HOH HOH A . M 4 HOH 61 261 110 HOH HOH A . M 4 HOH 62 262 113 HOH HOH A . M 4 HOH 63 263 122 HOH HOH A . M 4 HOH 64 264 103 HOH HOH A . M 4 HOH 65 265 99 HOH HOH A . M 4 HOH 66 266 29 HOH HOH A . M 4 HOH 67 267 7 HOH HOH A . M 4 HOH 68 268 126 HOH HOH A . M 4 HOH 69 269 81 HOH HOH A . M 4 HOH 70 270 112 HOH HOH A . M 4 HOH 71 271 107 HOH HOH A . M 4 HOH 72 272 95 HOH HOH A . M 4 HOH 73 273 117 HOH HOH A . N 4 HOH 1 201 87 HOH HOH B . N 4 HOH 2 202 88 HOH HOH B . N 4 HOH 3 203 89 HOH HOH B . N 4 HOH 4 204 124 HOH HOH B . N 4 HOH 5 205 76 HOH HOH B . N 4 HOH 6 206 74 HOH HOH B . N 4 HOH 7 207 32 HOH HOH B . N 4 HOH 8 208 155 HOH HOH B . N 4 HOH 9 209 64 HOH HOH B . N 4 HOH 10 210 69 HOH HOH B . N 4 HOH 11 211 108 HOH HOH B . N 4 HOH 12 212 73 HOH HOH B . N 4 HOH 13 213 134 HOH HOH B . N 4 HOH 14 214 135 HOH HOH B . N 4 HOH 15 215 9 HOH HOH B . N 4 HOH 16 216 58 HOH HOH B . N 4 HOH 17 217 92 HOH HOH B . N 4 HOH 18 218 98 HOH HOH B . N 4 HOH 19 219 129 HOH HOH B . N 4 HOH 20 220 91 HOH HOH B . N 4 HOH 21 221 72 HOH HOH B . N 4 HOH 22 222 62 HOH HOH B . N 4 HOH 23 223 10 HOH HOH B . N 4 HOH 24 224 47 HOH HOH B . N 4 HOH 25 225 146 HOH HOH B . N 4 HOH 26 226 21 HOH HOH B . N 4 HOH 27 227 152 HOH HOH B . N 4 HOH 28 228 123 HOH HOH B . N 4 HOH 29 229 141 HOH HOH B . N 4 HOH 30 230 34 HOH HOH B . N 4 HOH 31 231 77 HOH HOH B . N 4 HOH 32 232 39 HOH HOH B . N 4 HOH 33 233 52 HOH HOH B . N 4 HOH 34 234 43 HOH HOH B . N 4 HOH 35 235 20 HOH HOH B . N 4 HOH 36 236 8 HOH HOH B . N 4 HOH 37 237 154 HOH HOH B . N 4 HOH 38 238 3 HOH HOH B . N 4 HOH 39 239 18 HOH HOH B . N 4 HOH 40 240 2 HOH HOH B . N 4 HOH 41 241 63 HOH HOH B . N 4 HOH 42 242 16 HOH HOH B . N 4 HOH 43 243 90 HOH HOH B . N 4 HOH 44 244 147 HOH HOH B . N 4 HOH 45 245 97 HOH HOH B . N 4 HOH 46 246 142 HOH HOH B . N 4 HOH 47 247 71 HOH HOH B . N 4 HOH 48 248 41 HOH HOH B . N 4 HOH 49 249 19 HOH HOH B . N 4 HOH 50 250 139 HOH HOH B . N 4 HOH 51 251 78 HOH HOH B . N 4 HOH 52 252 38 HOH HOH B . N 4 HOH 53 253 145 HOH HOH B . N 4 HOH 54 254 101 HOH HOH B . N 4 HOH 55 255 133 HOH HOH B . N 4 HOH 56 256 53 HOH HOH B . N 4 HOH 57 257 70 HOH HOH B . N 4 HOH 58 258 82 HOH HOH B . N 4 HOH 59 259 57 HOH HOH B . N 4 HOH 60 260 148 HOH HOH B . N 4 HOH 61 261 149 HOH HOH B . N 4 HOH 62 262 42 HOH HOH B . N 4 HOH 63 263 127 HOH HOH B . N 4 HOH 64 264 150 HOH HOH B . N 4 HOH 65 265 104 HOH HOH B . N 4 HOH 66 266 109 HOH HOH B . N 4 HOH 67 267 115 HOH HOH B . N 4 HOH 68 268 17 HOH HOH B . N 4 HOH 69 269 6 HOH HOH B . N 4 HOH 70 270 116 HOH HOH B . N 4 HOH 71 271 94 HOH HOH B . N 4 HOH 72 272 111 HOH HOH B . N 4 HOH 73 273 61 HOH HOH B . N 4 HOH 74 274 130 HOH HOH B . N 4 HOH 75 275 128 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3450 ? 1 MORE -1 ? 1 'SSA (A^2)' 5240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 105 ? G MG . 2 1 B MG 105 ? L MG . 3 1 A HOH 270 ? M HOH . 4 1 B HOH 272 ? N HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 76.9 ? 2 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O3D ? C GP3 . ? A GP3 101 ? 1_555 0.0 ? 3 O2D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O3D ? C GP3 . ? A GP3 101 ? 1_555 76.9 ? 4 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 76.9 ? 5 O2D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 0.0 ? 6 O3D ? C GP3 . ? A GP3 101 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O2D ? C GP3 . ? A GP3 101 ? 1_555 76.9 ? 7 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O2G ? C GP3 . ? A GP3 101 ? 1_555 121.0 ? 8 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 69.7 ? 9 O2G ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 79.6 ? 10 O2A ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? A HOH 202 ? 2_785 62.9 ? 11 O2G ? C GP3 . ? A GP3 101 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? A HOH 202 ? 2_785 170.6 ? 12 O ? M HOH . ? A HOH 201 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? A HOH 202 ? 2_785 94.6 ? 13 O3D ? H GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? H GP3 . ? B GP3 101 ? 1_555 76.2 ? 14 O3D ? H GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O3D ? H GP3 . ? B GP3 101 ? 2_785 101.6 ? 15 O2D ? H GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O3D ? H GP3 . ? B GP3 101 ? 2_785 118.8 ? 16 O3D ? H GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? H GP3 . ? B GP3 101 ? 3_475 117.6 ? 17 O2D ? H GP3 . ? B GP3 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O2D ? H GP3 . ? B GP3 101 ? 3_475 95.8 ? 18 O3D ? H GP3 . ? B GP3 101 ? 2_785 MG ? D MG . ? A MG 102 ? 1_555 O2D ? H GP3 . ? B GP3 101 ? 3_475 133.1 ? 19 O ? M HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 221 ? 1_555 91.6 ? 20 O ? M HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 235 ? 1_555 91.9 ? 21 O ? M HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 235 ? 1_555 87.7 ? 22 O ? M HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 238 ? 1_555 89.1 ? 23 O ? M HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 238 ? 1_555 88.7 ? 24 O ? M HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 238 ? 1_555 176.3 ? 25 O ? M HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 240 ? 1_555 88.4 ? 26 O ? M HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 240 ? 1_555 179.2 ? 27 O ? M HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 240 ? 1_555 91.5 ? 28 O ? N HOH . ? B HOH 238 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 240 ? 1_555 92.1 ? 29 O ? M HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 269 ? 1_555 176.1 ? 30 O ? M HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 269 ? 1_555 92.2 ? 31 O ? M HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 269 ? 1_555 87.4 ? 32 O ? N HOH . ? B HOH 238 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 269 ? 1_555 91.9 ? 33 O ? N HOH . ? B HOH 240 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? N HOH . ? B HOH 269 ? 1_555 87.7 ? 34 O2A ? H GP3 . ? B GP3 101 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O2G ? H GP3 . ? B GP3 101 ? 1_555 120.7 ? 35 O2A ? H GP3 . ? B GP3 101 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? N HOH . ? B HOH 201 ? 1_555 70.3 ? 36 O2G ? H GP3 . ? B GP3 101 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? N HOH . ? B HOH 201 ? 1_555 79.4 ? 37 O2A ? H GP3 . ? B GP3 101 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 60.9 ? 38 O2G ? H GP3 . ? B GP3 101 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 169.2 ? 39 O ? N HOH . ? B HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 91.8 ? 40 O ? M HOH . ? A HOH 237 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? A HOH 241 ? 1_555 91.4 ? 41 O ? M HOH . ? A HOH 237 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? A HOH 267 ? 1_555 91.9 ? 42 O ? M HOH . ? A HOH 241 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? A HOH 267 ? 1_555 87.8 ? 43 O ? M HOH . ? A HOH 237 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 215 ? 1_555 89.5 ? 44 O ? M HOH . ? A HOH 241 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 215 ? 1_555 88.4 ? 45 O ? M HOH . ? A HOH 267 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 215 ? 1_555 176.0 ? 46 O ? M HOH . ? A HOH 237 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 223 ? 1_555 89.0 ? 47 O ? M HOH . ? A HOH 241 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 223 ? 1_555 179.7 ? 48 O ? M HOH . ? A HOH 267 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 223 ? 1_555 92.1 ? 49 O ? N HOH . ? B HOH 215 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 223 ? 1_555 91.7 ? 50 O ? M HOH . ? A HOH 237 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 236 ? 1_555 177.0 ? 51 O ? M HOH . ? A HOH 241 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 236 ? 1_555 91.6 ? 52 O ? M HOH . ? A HOH 267 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 236 ? 1_555 88.5 ? 53 O ? N HOH . ? B HOH 215 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 236 ? 1_555 90.3 ? 54 O ? N HOH . ? B HOH 223 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 236 ? 1_555 88.1 ? 55 O ? M HOH . ? A HOH 261 ? 1_555 MG ? L MG . ? B MG 105 ? 1_555 O ? M HOH . ? A HOH 261 ? 3_475 85.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-08 2 'Structure model' 1 1 2021-10-20 3 'Structure model' 1 2 2022-03-23 4 'Structure model' 1 3 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation_author 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7KUP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2B A GP3 101 ? ? O A HOH 201 ? ? 2.14 2 1 O2B B GP3 101 ? ? O B HOH 201 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A U 11 ? ? P A U 11 ? ? OP2 A U 11 ? ? 99.07 105.70 -6.63 0.90 N 2 1 "O5'" A U 12 ? ? P A U 12 ? ? OP1 A U 12 ? ? 118.89 110.70 8.19 1.20 N 3 1 "O5'" A U 12 ? ? P A U 12 ? ? OP2 A U 12 ? ? 96.67 105.70 -9.03 0.90 N 4 1 "C3'" B LKC 1 ? ? "O3'" B LKC 1 ? ? P B LCC 2 ? ? 127.12 119.70 7.42 1.20 Y 5 1 "O5'" B U 12 ? ? P B U 12 ? ? OP2 B U 12 ? ? 97.58 105.70 -8.12 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GP3 N9A N Y N 111 GP3 C8A C Y N 112 GP3 N7A N Y N 113 GP3 C5A C Y N 114 GP3 C6A C N N 115 GP3 O6A O N N 116 GP3 N1A N N N 117 GP3 C2A C N N 118 GP3 N2A N N N 119 GP3 N3A N N N 120 GP3 C4A C Y N 121 GP3 O5D O N N 122 GP3 C5D C N N 123 GP3 C4D C N R 124 GP3 O4D O N N 125 GP3 C3D C N S 126 GP3 O3D O N N 127 GP3 C2D C N R 128 GP3 O2D O N N 129 GP3 C1D C N R 130 GP3 PA P N R 131 GP3 O1A O N N 132 GP3 O2A O N N 133 GP3 O3A O N N 134 GP3 PB P N N 135 GP3 O1B O N N 136 GP3 O2B O N N 137 GP3 O3B O N N 138 GP3 PG P N R 139 GP3 O1G O N N 140 GP3 O2G O N N 141 GP3 O5E O N N 142 GP3 C5E C N N 143 GP3 C4E C N R 144 GP3 O4E O N N 145 GP3 C3E C N S 146 GP3 O3E O N N 147 GP3 C2E C N R 148 GP3 O2E O N N 149 GP3 C1E C N R 150 GP3 N9B N Y N 151 GP3 C8B C Y N 152 GP3 N7B N Y N 153 GP3 C5B C Y N 154 GP3 C6B C N N 155 GP3 O6B O N N 156 GP3 N1B N N N 157 GP3 C2B C N N 158 GP3 N2B N N N 159 GP3 N3B N N N 160 GP3 C4B C Y N 161 GP3 H8A H N N 162 GP3 H1A H N N 163 GP3 H21A H N N 164 GP3 H22A H N N 165 GP3 H51A H N N 166 GP3 H52A H N N 167 GP3 H4D H N N 168 GP3 H3D H N N 169 GP3 HO3A H N N 170 GP3 H2D H N N 171 GP3 HO2A H N N 172 GP3 H1D H N N 173 GP3 HOA2 H N N 174 GP3 HOB2 H N N 175 GP3 HOG2 H N N 176 GP3 H51B H N N 177 GP3 H52B H N N 178 GP3 H4E H N N 179 GP3 H3E H N N 180 GP3 HO3B H N N 181 GP3 H2E H N N 182 GP3 HO2B H N N 183 GP3 H1E H N N 184 GP3 H8B H N N 185 GP3 H1B H N N 186 GP3 H21B H N N 187 GP3 H22B H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 LCC "O5'" O N N 192 LCC "C5'" C N N 193 LCC "C4'" C N R 194 LCC "O4'" O N N 195 LCC "C1'" C N R 196 LCC N1 N N N 197 LCC C6 C N N 198 LCC C5 C N N 199 LCC C5M C N N 200 LCC C4 C N N 201 LCC N4 N N N 202 LCC N3 N N N 203 LCC C2 C N N 204 LCC O2 O N N 205 LCC "C3'" C N S 206 LCC "C2'" C N R 207 LCC "O2'" O N N 208 LCC "O3'" O N N 209 LCC "C6'" C N N 210 LCC P P N N 211 LCC O1P O N N 212 LCC O2P O N N 213 LCC OXT O N N 214 LCC "H5'1" H N N 215 LCC "H5'2" H N N 216 LCC "H1'" H N N 217 LCC H6 H N N 218 LCC H5M1 H N N 219 LCC H5M2 H N N 220 LCC H5M3 H N N 221 LCC H41 H N N 222 LCC H42 H N N 223 LCC "H3'" H N N 224 LCC "H2'1" H N N 225 LCC H3T H N N 226 LCC "H6'1" H N N 227 LCC "H6'2" H N N 228 LCC H1P H N N 229 LCC HXT H N N 230 LCG P P N N 231 LCG OP1 O N N 232 LCG "O5'" O N N 233 LCG "C5'" C N N 234 LCG "C3'" C N S 235 LCG "C6'" C N N 236 LCG N9 N Y N 237 LCG C8 C Y N 238 LCG C4 C Y N 239 LCG N7 N Y N 240 LCG C5 C Y N 241 LCG C6 C N N 242 LCG "C2'" C N R 243 LCG O6 O N N 244 LCG "C4'" C N R 245 LCG "C1'" C N R 246 LCG C2 C N N 247 LCG N1 N N N 248 LCG "O4'" O N N 249 LCG OP2 O N N 250 LCG N2 N N N 251 LCG N3 N N N 252 LCG "O2'" O N N 253 LCG "O3'" O N N 254 LCG OP3 O N N 255 LCG "H5'" H N N 256 LCG "H5''" H N N 257 LCG "H3'" H N N 258 LCG "H6'1" H N N 259 LCG "H6'2" H N N 260 LCG H8 H N N 261 LCG "H2'" H N N 262 LCG "H1'" H N N 263 LCG H1 H N N 264 LCG HOP2 H N N 265 LCG H21 H N N 266 LCG H22 H N N 267 LCG "HO3'" H N N 268 LCG HOP3 H N N 269 LKC N1 N N N 270 LKC C2 C N N 271 LKC N3 N N N 272 LKC C4 C N N 273 LKC C5 C N N 274 LKC C6 C N N 275 LKC O2 O N N 276 LKC N4 N N N 277 LKC "C1'" C N R 278 LKC "C2'" C N R 279 LKC "C3'" C N S 280 LKC "C4'" C N S 281 LKC "O4'" O N N 282 LKC "O3'" O N N 283 LKC "C5'" C N N 284 LKC "O5'" O N N 285 LKC C5A C N N 286 LKC "O2'" O N N 287 LKC "C6'" C N N 288 LKC H6 H N N 289 LKC H41 H N N 290 LKC H42 H N N 291 LKC "H1'" H N N 292 LKC "H2'1" H N N 293 LKC "H3'" H N N 294 LKC H3T H N N 295 LKC "H5'1" H N N 296 LKC "H5'2" H N N 297 LKC H5T H N N 298 LKC H5M1 H N N 299 LKC H5M2 H N N 300 LKC H5M3 H N N 301 LKC "H6'1" H N N 302 LKC "H6'2" H N N 303 MG MG MG N N 304 OMG P P N N 305 OMG OP1 O N N 306 OMG OP2 O N N 307 OMG OP3 O N N 308 OMG "O5'" O N N 309 OMG "C5'" C N N 310 OMG "C4'" C N R 311 OMG "O4'" O N N 312 OMG "C3'" C N R 313 OMG "O3'" O N N 314 OMG "C2'" C N R 315 OMG "O2'" O N N 316 OMG CM2 C N N 317 OMG "C1'" C N R 318 OMG N9 N Y N 319 OMG C8 C Y N 320 OMG N7 N Y N 321 OMG C5 C Y N 322 OMG C6 C N N 323 OMG O6 O N N 324 OMG N1 N N N 325 OMG C2 C N N 326 OMG N2 N N N 327 OMG N3 N N N 328 OMG C4 C Y N 329 OMG HOP2 H N N 330 OMG HOP3 H N N 331 OMG "H5'" H N N 332 OMG "H5''" H N N 333 OMG "H4'" H N N 334 OMG "H3'" H N N 335 OMG "HO3'" H N N 336 OMG "H2'" H N N 337 OMG HM21 H N N 338 OMG HM22 H N N 339 OMG HM23 H N N 340 OMG "H1'" H N N 341 OMG H8 H N N 342 OMG HN1 H N N 343 OMG HN21 H N N 344 OMG HN22 H N N 345 U OP3 O N N 346 U P P N N 347 U OP1 O N N 348 U OP2 O N N 349 U "O5'" O N N 350 U "C5'" C N N 351 U "C4'" C N R 352 U "O4'" O N N 353 U "C3'" C N S 354 U "O3'" O N N 355 U "C2'" C N R 356 U "O2'" O N N 357 U "C1'" C N R 358 U N1 N N N 359 U C2 C N N 360 U O2 O N N 361 U N3 N N N 362 U C4 C N N 363 U O4 O N N 364 U C5 C N N 365 U C6 C N N 366 U HOP3 H N N 367 U HOP2 H N N 368 U "H5'" H N N 369 U "H5''" H N N 370 U "H4'" H N N 371 U "H3'" H N N 372 U "HO3'" H N N 373 U "H2'" H N N 374 U "HO2'" H N N 375 U "H1'" H N N 376 U H3 H N N 377 U H5 H N N 378 U H6 H N N 379 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GP3 N9A C8A sing Y N 116 GP3 N9A C4A sing Y N 117 GP3 N9A C1D sing N N 118 GP3 C8A N7A doub Y N 119 GP3 C8A H8A sing N N 120 GP3 N7A C5A sing Y N 121 GP3 C5A C6A sing N N 122 GP3 C5A C4A doub Y N 123 GP3 C6A O6A doub N N 124 GP3 C6A N1A sing N N 125 GP3 N1A C2A sing N N 126 GP3 N1A H1A sing N N 127 GP3 C2A N2A sing N N 128 GP3 C2A N3A doub N N 129 GP3 N2A H21A sing N N 130 GP3 N2A H22A sing N N 131 GP3 N3A C4A sing N N 132 GP3 O5D C5D sing N N 133 GP3 O5D PA sing N N 134 GP3 C5D C4D sing N N 135 GP3 C5D H51A sing N N 136 GP3 C5D H52A sing N N 137 GP3 C4D O4D sing N N 138 GP3 C4D C3D sing N N 139 GP3 C4D H4D sing N N 140 GP3 O4D C1D sing N N 141 GP3 C3D O3D sing N N 142 GP3 C3D C2D sing N N 143 GP3 C3D H3D sing N N 144 GP3 O3D HO3A sing N N 145 GP3 C2D O2D sing N N 146 GP3 C2D C1D sing N N 147 GP3 C2D H2D sing N N 148 GP3 O2D HO2A sing N N 149 GP3 C1D H1D sing N N 150 GP3 PA O1A doub N N 151 GP3 PA O2A sing N N 152 GP3 PA O3A sing N N 153 GP3 O2A HOA2 sing N N 154 GP3 O3A PB sing N N 155 GP3 PB O1B doub N N 156 GP3 PB O2B sing N N 157 GP3 PB O3B sing N N 158 GP3 O2B HOB2 sing N N 159 GP3 O3B PG sing N N 160 GP3 PG O1G doub N N 161 GP3 PG O2G sing N N 162 GP3 PG O5E sing N N 163 GP3 O2G HOG2 sing N N 164 GP3 O5E C5E sing N N 165 GP3 C5E C4E sing N N 166 GP3 C5E H51B sing N N 167 GP3 C5E H52B sing N N 168 GP3 C4E O4E sing N N 169 GP3 C4E C3E sing N N 170 GP3 C4E H4E sing N N 171 GP3 O4E C1E sing N N 172 GP3 C3E O3E sing N N 173 GP3 C3E C2E sing N N 174 GP3 C3E H3E sing N N 175 GP3 O3E HO3B sing N N 176 GP3 C2E O2E sing N N 177 GP3 C2E C1E sing N N 178 GP3 C2E H2E sing N N 179 GP3 O2E HO2B sing N N 180 GP3 C1E N9B sing N N 181 GP3 C1E H1E sing N N 182 GP3 N9B C8B sing Y N 183 GP3 N9B C4B sing Y N 184 GP3 C8B N7B doub Y N 185 GP3 C8B H8B sing N N 186 GP3 N7B C5B sing Y N 187 GP3 C5B C6B sing N N 188 GP3 C5B C4B doub Y N 189 GP3 C6B O6B doub N N 190 GP3 C6B N1B sing N N 191 GP3 N1B C2B sing N N 192 GP3 N1B H1B sing N N 193 GP3 C2B N2B sing N N 194 GP3 C2B N3B doub N N 195 GP3 N2B H21B sing N N 196 GP3 N2B H22B sing N N 197 GP3 N3B C4B sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 LCC "O5'" "C5'" sing N N 201 LCC "O5'" P sing N N 202 LCC "C5'" "C4'" sing N N 203 LCC "C5'" "H5'1" sing N N 204 LCC "C5'" "H5'2" sing N N 205 LCC "C4'" "O4'" sing N N 206 LCC "C4'" "C3'" sing N N 207 LCC "C4'" "C6'" sing N N 208 LCC "O4'" "C1'" sing N N 209 LCC "C1'" N1 sing N N 210 LCC "C1'" "C2'" sing N N 211 LCC "C1'" "H1'" sing N N 212 LCC N1 C6 sing N N 213 LCC N1 C2 sing N N 214 LCC C6 C5 doub N N 215 LCC C6 H6 sing N N 216 LCC C5 C5M sing N N 217 LCC C5 C4 sing N N 218 LCC C5M H5M1 sing N N 219 LCC C5M H5M2 sing N N 220 LCC C5M H5M3 sing N N 221 LCC C4 N4 sing N N 222 LCC C4 N3 doub N N 223 LCC N4 H41 sing N N 224 LCC N4 H42 sing N N 225 LCC N3 C2 sing N N 226 LCC C2 O2 doub N N 227 LCC "C3'" "C2'" sing N N 228 LCC "C3'" "O3'" sing N N 229 LCC "C3'" "H3'" sing N N 230 LCC "C2'" "O2'" sing N N 231 LCC "C2'" "H2'1" sing N N 232 LCC "O2'" "C6'" sing N N 233 LCC "O3'" H3T sing N N 234 LCC "C6'" "H6'1" sing N N 235 LCC "C6'" "H6'2" sing N N 236 LCC P O1P sing N N 237 LCC P O2P doub N N 238 LCC P OXT sing N N 239 LCC O1P H1P sing N N 240 LCC OXT HXT sing N N 241 LCG P OP1 doub N N 242 LCG P "O5'" sing N N 243 LCG P OP2 sing N N 244 LCG P OP3 sing N N 245 LCG "O5'" "C5'" sing N N 246 LCG "C5'" "C4'" sing N N 247 LCG "C5'" "H5'" sing N N 248 LCG "C5'" "H5''" sing N N 249 LCG "C3'" "C2'" sing N N 250 LCG "C3'" "C4'" sing N N 251 LCG "C3'" "O3'" sing N N 252 LCG "C3'" "H3'" sing N N 253 LCG "C6'" "C4'" sing N N 254 LCG "C6'" "O2'" sing N N 255 LCG "C6'" "H6'1" sing N N 256 LCG "C6'" "H6'2" sing N N 257 LCG N9 C8 sing Y N 258 LCG N9 C4 sing Y N 259 LCG N9 "C1'" sing N N 260 LCG C8 N7 doub Y N 261 LCG C8 H8 sing N N 262 LCG C4 C5 doub Y N 263 LCG C4 N3 sing N N 264 LCG N7 C5 sing Y N 265 LCG C5 C6 sing N N 266 LCG C6 O6 doub N N 267 LCG C6 N1 sing N N 268 LCG "C2'" "C1'" sing N N 269 LCG "C2'" "O2'" sing N N 270 LCG "C2'" "H2'" sing N N 271 LCG "C4'" "O4'" sing N N 272 LCG "C1'" "O4'" sing N N 273 LCG "C1'" "H1'" sing N N 274 LCG C2 N1 sing N N 275 LCG C2 N2 sing N N 276 LCG C2 N3 doub N N 277 LCG N1 H1 sing N N 278 LCG OP2 HOP2 sing N N 279 LCG N2 H21 sing N N 280 LCG N2 H22 sing N N 281 LCG "O3'" "HO3'" sing N N 282 LCG OP3 HOP3 sing N N 283 LKC N1 C2 sing N N 284 LKC N1 C6 sing N N 285 LKC N1 "C1'" sing N N 286 LKC C2 N3 sing N N 287 LKC C2 O2 doub N N 288 LKC N3 C4 doub N N 289 LKC C4 C5 sing N N 290 LKC C4 N4 sing N N 291 LKC C5 C6 doub N N 292 LKC C5 C5A sing N N 293 LKC C6 H6 sing N N 294 LKC N4 H41 sing N N 295 LKC N4 H42 sing N N 296 LKC "C1'" "C2'" sing N N 297 LKC "C1'" "O4'" sing N N 298 LKC "C1'" "H1'" sing N N 299 LKC "C2'" "C3'" sing N N 300 LKC "C2'" "O2'" sing N N 301 LKC "C2'" "H2'1" sing N N 302 LKC "C3'" "C4'" sing N N 303 LKC "C3'" "O3'" sing N N 304 LKC "C3'" "H3'" sing N N 305 LKC "C4'" "O4'" sing N N 306 LKC "C4'" "C5'" sing N N 307 LKC "C4'" "C6'" sing N N 308 LKC "O3'" H3T sing N N 309 LKC "C5'" "O5'" sing N N 310 LKC "C5'" "H5'1" sing N N 311 LKC "C5'" "H5'2" sing N N 312 LKC "O5'" H5T sing N N 313 LKC C5A H5M1 sing N N 314 LKC C5A H5M2 sing N N 315 LKC C5A H5M3 sing N N 316 LKC "O2'" "C6'" sing N N 317 LKC "C6'" "H6'1" sing N N 318 LKC "C6'" "H6'2" sing N N 319 OMG P OP1 doub N N 320 OMG P OP2 sing N N 321 OMG P OP3 sing N N 322 OMG P "O5'" sing N N 323 OMG OP2 HOP2 sing N N 324 OMG OP3 HOP3 sing N N 325 OMG "O5'" "C5'" sing N N 326 OMG "C5'" "C4'" sing N N 327 OMG "C5'" "H5'" sing N N 328 OMG "C5'" "H5''" sing N N 329 OMG "C4'" "O4'" sing N N 330 OMG "C4'" "C3'" sing N N 331 OMG "C4'" "H4'" sing N N 332 OMG "O4'" "C1'" sing N N 333 OMG "C3'" "O3'" sing N N 334 OMG "C3'" "C2'" sing N N 335 OMG "C3'" "H3'" sing N N 336 OMG "O3'" "HO3'" sing N N 337 OMG "C2'" "O2'" sing N N 338 OMG "C2'" "C1'" sing N N 339 OMG "C2'" "H2'" sing N N 340 OMG "O2'" CM2 sing N N 341 OMG CM2 HM21 sing N N 342 OMG CM2 HM22 sing N N 343 OMG CM2 HM23 sing N N 344 OMG "C1'" N9 sing N N 345 OMG "C1'" "H1'" sing N N 346 OMG N9 C8 sing Y N 347 OMG N9 C4 sing Y N 348 OMG C8 N7 doub Y N 349 OMG C8 H8 sing N N 350 OMG N7 C5 sing Y N 351 OMG C5 C6 sing N N 352 OMG C5 C4 doub Y N 353 OMG C6 O6 doub N N 354 OMG C6 N1 sing N N 355 OMG N1 C2 sing N N 356 OMG N1 HN1 sing N N 357 OMG C2 N2 sing N N 358 OMG C2 N3 doub N N 359 OMG N2 HN21 sing N N 360 OMG N2 HN22 sing N N 361 OMG N3 C4 sing N N 362 U OP3 P sing N N 363 U OP3 HOP3 sing N N 364 U P OP1 doub N N 365 U P OP2 sing N N 366 U P "O5'" sing N N 367 U OP2 HOP2 sing N N 368 U "O5'" "C5'" sing N N 369 U "C5'" "C4'" sing N N 370 U "C5'" "H5'" sing N N 371 U "C5'" "H5''" sing N N 372 U "C4'" "O4'" sing N N 373 U "C4'" "C3'" sing N N 374 U "C4'" "H4'" sing N N 375 U "O4'" "C1'" sing N N 376 U "C3'" "O3'" sing N N 377 U "C3'" "C2'" sing N N 378 U "C3'" "H3'" sing N N 379 U "O3'" "HO3'" sing N N 380 U "C2'" "O2'" sing N N 381 U "C2'" "C1'" sing N N 382 U "C2'" "H2'" sing N N 383 U "O2'" "HO2'" sing N N 384 U "C1'" N1 sing N N 385 U "C1'" "H1'" sing N N 386 U N1 C2 sing N N 387 U N1 C6 sing N N 388 U C2 O2 doub N N 389 U C2 N3 sing N N 390 U N3 C4 sing N N 391 U N3 H3 sing N N 392 U C4 O4 doub N N 393 U C4 C5 sing N N 394 U C5 C6 doub N N 395 U C5 H5 sing N N 396 U C6 H6 sing N N 397 # _ndb_struct_conf_na.entry_id 7KUP _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.237 -0.193 0.122 -1.037 -12.112 -1.360 1 A_LCG4:C17_B A 4 ? B 17 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.051 -0.107 0.034 5.427 -10.332 -4.692 2 A_A9:U16_B A 9 ? B 16 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.159 -0.154 -0.069 8.909 -17.928 -1.054 3 A_C10:G15_B A 10 ? B 15 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.186 -0.168 -0.066 0.777 -14.468 1.967 4 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A U 8 1_555 B A 9 1_555 0.164 -0.198 0.078 0.748 -11.752 4.245 5 A_U12:A13_B A 12 ? B 13 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.151 -0.182 0.100 -0.937 -11.537 4.666 6 A_A13:U12_B A 13 ? B 12 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.124 -0.164 -0.053 -0.167 -13.698 1.615 7 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.148 -0.148 -0.055 -8.831 -17.515 -1.130 8 A_G15:C10_B A 15 ? B 10 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.031 -0.120 0.047 -5.552 -10.505 -5.013 9 A_U16:A9_B A 16 ? B 9 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.243 -0.177 0.147 0.938 -12.589 -1.103 10 A_C17:LCG4_B A 17 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.808 -1.488 3.085 -1.858 4.707 31.817 -3.452 1.153 2.882 8.519 3.362 32.206 1 AA_LCG4A9:U16C17_BB A 4 ? B 17 ? A 9 ? B 16 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.467 -1.587 3.195 0.660 3.178 32.333 -3.369 -0.725 3.038 5.690 -1.182 32.491 2 AA_A9C10:G15U16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.329 -1.707 3.412 -2.226 11.845 29.561 -5.160 0.213 2.572 22.093 4.151 31.873 3 AA_C10U11:A14G15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 0.017 -1.090 3.287 -2.594 7.793 33.053 -3.066 -0.429 2.951 13.441 4.474 34.030 4 AA_U11U12:A13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.023 -1.433 3.199 -0.078 15.807 28.734 -4.928 -0.053 2.141 29.226 0.145 32.715 5 AA_U12A13:U12A13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.024 -1.085 3.256 2.630 7.819 32.693 -3.093 0.452 2.916 13.623 -4.581 33.690 6 AA_A13A14:U11U12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.353 -1.725 3.428 2.485 11.676 30.067 -5.086 -0.211 2.614 21.472 -4.570 32.299 7 AA_A14G15:C10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.443 -1.598 3.199 -0.533 3.111 32.080 -3.408 0.707 3.041 5.612 0.961 32.231 8 AA_G15U16:A9C10_BB A 15 ? B 10 ? A 16 ? B 9 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.816 -1.494 3.070 1.832 4.859 31.956 -3.462 -1.169 2.859 8.753 -3.301 32.365 9 AA_U16C17:LCG4A9_BB A 16 ? B 9 ? A 17 ? B 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 1607034 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 OMG ? ? OMG ? ? 'SUBJECT OF INVESTIGATION' ? 2 GP3 ? ? GP3 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "DIGUANOSINE-5'-TRIPHOSPHATE" GP3 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5UEE _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #