HEADER SUGAR BINDING PROTEIN 26-NOV-20 7KV1 TITLE SURFACE GLYCAN-BINDING PROTEIN A FROM BACTEROIDES UNIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS (STRAIN ATCC 8492 / DSM SOURCE 3 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / VPI 0061); SOURCE 4 ORGANISM_TAXID: 411479; SOURCE 5 STRAIN: ATCC 8492 / DSM 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / SOURCE 6 VPI 0061; SOURCE 7 GENE: BACUNI_01488; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUSD, TETRATRICOPEPTIDE REPEAT, CBM, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAMURA,H.BRUMER,F.VAN PETEGEM REVDAT 4 06-MAR-24 7KV1 1 REMARK REVDAT 3 21-JUL-21 7KV1 1 JRNL REVDAT 2 03-MAR-21 7KV1 1 JRNL REVDAT 1 17-FEB-21 7KV1 0 JRNL AUTH K.TAMURA,G.DEJEAN,F.VAN PETEGEM,H.BRUMER JRNL TITL DISTINCT PROTEIN ARCHITECTURES MEDIATE SPECIES-SPECIFIC JRNL TITL 2 BETA-GLUCAN BINDING AND METABOLISM IN THE HUMAN GUT JRNL TITL 3 MICROBIOTA. JRNL REF J.BIOL.CHEM. V. 296 00415 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33587952 JRNL DOI 10.1016/J.JBC.2021.100415 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 73642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.263 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7540 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6604 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10252 ; 1.545 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15257 ; 1.422 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 903 ; 6.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 432 ;35.263 ;22.847 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1180 ;12.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 935 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8548 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7KV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 41.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.3, 0.2 M AMMONIUM REMARK 280 ACETATE, 22 % (W/V) PEG3350, 0.01 M HEXAMINE COBALT (III) REMARK 280 CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.79150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 THR A 19 REMARK 465 THR A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 PHE A 26 REMARK 465 LEU A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 GLU A 30 REMARK 465 ASN A 31 REMARK 465 PRO A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 GLU A 38 REMARK 465 ASP A 39 REMARK 465 TYR A 40 REMARK 465 TYR A 41 REMARK 465 THR A 42 REMARK 465 PRO A 176 REMARK 465 PRO A 177 REMARK 465 THR A 212 REMARK 465 ILE A 213 REMARK 465 LYS A 214 REMARK 465 GLU A 215 REMARK 465 GLY A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 218 REMARK 465 VAL A 219 REMARK 465 GLU A 293 REMARK 465 GLN A 294 REMARK 465 THR A 295 REMARK 465 ASN A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 ARG A 299 REMARK 465 GLY A 300 REMARK 465 TRP A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 VAL A 307 REMARK 465 GLY A 308 REMARK 465 GLN A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 GLY A 393 REMARK 465 ASP A 394 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 ILE B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 ILE B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 THR B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 THR B 19 REMARK 465 THR B 20 REMARK 465 GLY B 21 REMARK 465 CYS B 22 REMARK 465 SER B 23 REMARK 465 ASP B 24 REMARK 465 SER B 25 REMARK 465 PHE B 26 REMARK 465 LEU B 27 REMARK 465 GLU B 28 REMARK 465 VAL B 29 REMARK 465 GLU B 30 REMARK 465 ASN B 31 REMARK 465 PRO B 32 REMARK 465 THR B 33 REMARK 465 GLY B 34 REMARK 465 GLU B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 37 REMARK 465 GLU B 38 REMARK 465 ASP B 39 REMARK 465 TYR B 40 REMARK 465 TYR B 41 REMARK 465 THR B 42 REMARK 465 PRO B 176 REMARK 465 PRO B 177 REMARK 465 ILE B 213 REMARK 465 LYS B 214 REMARK 465 GLU B 215 REMARK 465 GLY B 216 REMARK 465 LYS B 217 REMARK 465 GLU B 218 REMARK 465 VAL B 219 REMARK 465 GLU B 293 REMARK 465 GLN B 294 REMARK 465 THR B 295 REMARK 465 ASN B 296 REMARK 465 ASN B 297 REMARK 465 GLU B 298 REMARK 465 ARG B 299 REMARK 465 GLY B 300 REMARK 465 TRP B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 LEU B 305 REMARK 465 ALA B 306 REMARK 465 VAL B 307 REMARK 465 GLY B 308 REMARK 465 GLN B 390 REMARK 465 SER B 391 REMARK 465 SER B 392 REMARK 465 GLY B 393 REMARK 465 ASP B 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 43 OG1 CG2 REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 HIS A 46 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 TRP A 132 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 132 CZ3 CH2 REMARK 470 THR A 134 OG1 CG2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 TYR A 178 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ASP A 220 CG OD1 OD2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLN A 350 CG CD OE1 NE2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 ASP A 364 CG OD1 OD2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 THR B 43 OG1 CG2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 TRP B 132 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 132 CZ3 CH2 REMARK 470 THR B 134 OG1 CG2 REMARK 470 SER B 174 OG REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 TYR B 178 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 THR B 212 OG1 CG2 REMARK 470 GLU B 366 CG CD OE1 OE2 REMARK 470 PHE B 388 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 ASN B 396 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 755 O HOH B 915 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 109 56.21 -102.69 REMARK 500 LYS A 208 -43.32 -138.55 REMARK 500 LEU B 109 53.36 -108.62 REMARK 500 LYS B 208 -50.14 -138.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB B 604 DBREF 7KV1 A 1 529 UNP A7V1Q0 A7V1Q0_BACUC 1 529 DBREF 7KV1 B 1 529 UNP A7V1Q0 A7V1Q0_BACUC 1 529 SEQRES 1 A 529 MET LYS THR ASN LYS ILE LEU ALA ILE GLY LEU LEU ALA SEQRES 2 A 529 ALA ALA THR VAL LEU THR THR GLY CYS SER ASP SER PHE SEQRES 3 A 529 LEU GLU VAL GLU ASN PRO THR GLY GLU PRO LEU GLU ASP SEQRES 4 A 529 TYR TYR THR THR ASP GLU HIS ILE GLN GLU ALA LEU ILE SEQRES 5 A 529 ALA ALA TYR ASP PRO LEU HIS TRP PRO ASP TRP GLY LEU SEQRES 6 A 529 GLY GLN TYR ASN ALA LEU ASN ILE ASP GLY GLU ILE MET SEQRES 7 A 529 GLY ASP ASN PHE TRP VAL GLY GLY ALA THR LYS THR ASP SEQRES 8 A 529 MET GLN ASN TRP HIS MET LEU PHE ASN TYR GLU ALA ASN SEQRES 9 A 529 GLU ASN ASN THR LEU GLY SER LEU TRP THR VAL ASP TYR SEQRES 10 A 529 SER GLY ILE LYS ARG CYS ASN ASP LEU LEU LYS TYR LEU SEQRES 11 A 529 ASP TRP GLY THR ASP VAL THR GLU ALA ASN ARG LYS LEU SEQRES 12 A 529 TYR GLU MET GLN ALA ARG LEU LEU ARG VAL PHE TYR TYR SEQRES 13 A 529 ASN MET LEU TRP HIS TYR PHE GLY ASN VAL PRO PHE TYR SEQRES 14 A 529 LEU GLU ASN LEU SER GLU PRO PRO TYR THR ALA PRO GLN SEQRES 15 A 529 TYR THR ALA ASP GLN VAL TYR ALA GLU LEU ILE ALA GLU SEQRES 16 A 529 LEU GLU ALA VAL ILE ASP SER LYS VAL LEU PRO LEU LYS SEQRES 17 A 529 TYR TYR LYS THR ILE LYS GLU GLY LYS GLU VAL ASP ASP SEQRES 18 A 529 GLU GLY GLN LEU GLY ARG VAL THR GLN ALA MET ALA TYR SEQRES 19 A 529 MET VAL TYR ALA GLU MET VAL MET TYR GLN ASN ASP GLU SEQRES 20 A 529 SER ARG PHE SER LYS ALA LEU GLY TYR MET LYS GLU LEU SEQRES 21 A 529 ILE ASP SER PRO SER PHE ARG LEU ASN PRO SER PHE ALA SEQRES 22 A 529 ASN ILE TRP GLU THR GLU GLY GLU TRP CYS ASP GLU SER SEQRES 23 A 529 ILE TRP GLU ILE ASN TYR GLU GLN THR ASN ASN GLU ARG SEQRES 24 A 529 GLY TRP GLY SER PRO LEU ALA VAL GLY GLY THR VAL LEU SEQRES 25 A 529 PRO THR LEU ILE SER PRO ASN SER PHE PRO GLY ASP ASP SEQRES 26 A 529 GLY TRP SER LYS GLY ASN ASP GLY TRP GLY PHE MET PRO SEQRES 27 A 529 MET ARG LEU GLU THR TYR GLN MET PHE SER GLU GLN ASP SEQRES 28 A 529 LYS ARG ARG ASP ALA THR CYS TRP VAL ILE ALA GLU ASP SEQRES 29 A 529 VAL GLU TYR THR LYS ARG TYR GLN ASP THR HIS ILE TRP SEQRES 30 A 529 LEU GLN LYS TYR ARG PRO TYR ASP LYS ASN PHE LYS GLN SEQRES 31 A 529 SER SER GLY ASP GLN ASN LEU ASN TYR ASN ASN ASN TYR SEQRES 32 A 529 ARG TYR TYR ARG TYR ALA GLU THR LEU LEU ASN ALA ALA SEQRES 33 A 529 GLU LEU SER LEU ARG THR GLY GLY SER GLY THR GLY GLU SEQRES 34 A 529 ALA LYS THR TRP LEU ASN GLU VAL ARG THR ARG ALA GLY SEQRES 35 A 529 LEU ALA GLY LEU ALA ASN VAL THR VAL ASP ASP VAL LEU SEQRES 36 A 529 THR GLU ARG ARG LEU GLU PHE VAL GLY GLU GLY LYS ARG SEQRES 37 A 529 TYR PHE ASP LEU VAL ARG ALA GLU GLY ILE SER GLY ALA SEQRES 38 A 529 SER ALA SER ASN LYS ALA THR THR ALA LEU VAL PRO ASP SEQRES 39 A 529 GLU TYR GLY TYR ARG THR ASN SER TRP THR ALA LYS LYS SEQRES 40 A 529 LYS TYR ILE PRO ILE ALA GLN GLY GLU LEU ASP SER ASP SEQRES 41 A 529 PRO ALA LEU VAL GLN ASN ALA TYR LYS SEQRES 1 B 529 MET LYS THR ASN LYS ILE LEU ALA ILE GLY LEU LEU ALA SEQRES 2 B 529 ALA ALA THR VAL LEU THR THR GLY CYS SER ASP SER PHE SEQRES 3 B 529 LEU GLU VAL GLU ASN PRO THR GLY GLU PRO LEU GLU ASP SEQRES 4 B 529 TYR TYR THR THR ASP GLU HIS ILE GLN GLU ALA LEU ILE SEQRES 5 B 529 ALA ALA TYR ASP PRO LEU HIS TRP PRO ASP TRP GLY LEU SEQRES 6 B 529 GLY GLN TYR ASN ALA LEU ASN ILE ASP GLY GLU ILE MET SEQRES 7 B 529 GLY ASP ASN PHE TRP VAL GLY GLY ALA THR LYS THR ASP SEQRES 8 B 529 MET GLN ASN TRP HIS MET LEU PHE ASN TYR GLU ALA ASN SEQRES 9 B 529 GLU ASN ASN THR LEU GLY SER LEU TRP THR VAL ASP TYR SEQRES 10 B 529 SER GLY ILE LYS ARG CYS ASN ASP LEU LEU LYS TYR LEU SEQRES 11 B 529 ASP TRP GLY THR ASP VAL THR GLU ALA ASN ARG LYS LEU SEQRES 12 B 529 TYR GLU MET GLN ALA ARG LEU LEU ARG VAL PHE TYR TYR SEQRES 13 B 529 ASN MET LEU TRP HIS TYR PHE GLY ASN VAL PRO PHE TYR SEQRES 14 B 529 LEU GLU ASN LEU SER GLU PRO PRO TYR THR ALA PRO GLN SEQRES 15 B 529 TYR THR ALA ASP GLN VAL TYR ALA GLU LEU ILE ALA GLU SEQRES 16 B 529 LEU GLU ALA VAL ILE ASP SER LYS VAL LEU PRO LEU LYS SEQRES 17 B 529 TYR TYR LYS THR ILE LYS GLU GLY LYS GLU VAL ASP ASP SEQRES 18 B 529 GLU GLY GLN LEU GLY ARG VAL THR GLN ALA MET ALA TYR SEQRES 19 B 529 MET VAL TYR ALA GLU MET VAL MET TYR GLN ASN ASP GLU SEQRES 20 B 529 SER ARG PHE SER LYS ALA LEU GLY TYR MET LYS GLU LEU SEQRES 21 B 529 ILE ASP SER PRO SER PHE ARG LEU ASN PRO SER PHE ALA SEQRES 22 B 529 ASN ILE TRP GLU THR GLU GLY GLU TRP CYS ASP GLU SER SEQRES 23 B 529 ILE TRP GLU ILE ASN TYR GLU GLN THR ASN ASN GLU ARG SEQRES 24 B 529 GLY TRP GLY SER PRO LEU ALA VAL GLY GLY THR VAL LEU SEQRES 25 B 529 PRO THR LEU ILE SER PRO ASN SER PHE PRO GLY ASP ASP SEQRES 26 B 529 GLY TRP SER LYS GLY ASN ASP GLY TRP GLY PHE MET PRO SEQRES 27 B 529 MET ARG LEU GLU THR TYR GLN MET PHE SER GLU GLN ASP SEQRES 28 B 529 LYS ARG ARG ASP ALA THR CYS TRP VAL ILE ALA GLU ASP SEQRES 29 B 529 VAL GLU TYR THR LYS ARG TYR GLN ASP THR HIS ILE TRP SEQRES 30 B 529 LEU GLN LYS TYR ARG PRO TYR ASP LYS ASN PHE LYS GLN SEQRES 31 B 529 SER SER GLY ASP GLN ASN LEU ASN TYR ASN ASN ASN TYR SEQRES 32 B 529 ARG TYR TYR ARG TYR ALA GLU THR LEU LEU ASN ALA ALA SEQRES 33 B 529 GLU LEU SER LEU ARG THR GLY GLY SER GLY THR GLY GLU SEQRES 34 B 529 ALA LYS THR TRP LEU ASN GLU VAL ARG THR ARG ALA GLY SEQRES 35 B 529 LEU ALA GLY LEU ALA ASN VAL THR VAL ASP ASP VAL LEU SEQRES 36 B 529 THR GLU ARG ARG LEU GLU PHE VAL GLY GLU GLY LYS ARG SEQRES 37 B 529 TYR PHE ASP LEU VAL ARG ALA GLU GLY ILE SER GLY ALA SEQRES 38 B 529 SER ALA SER ASN LYS ALA THR THR ALA LEU VAL PRO ASP SEQRES 39 B 529 GLU TYR GLY TYR ARG THR ASN SER TRP THR ALA LYS LYS SEQRES 40 B 529 LYS TYR ILE PRO ILE ALA GLN GLY GLU LEU ASP SER ASP SEQRES 41 B 529 PRO ALA LEU VAL GLN ASN ALA TYR LYS HET NCO A 601 7 HET EDO A 602 4 HET NCO B 601 7 HET EDO B 602 4 HET EDO B 603 4 HET BTB B 604 14 HETNAM NCO COBALT HEXAMMINE(III) HETNAM EDO 1,2-ETHANEDIOL HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN BTB BIS-TRIS BUFFER FORMUL 3 NCO 2(CO H18 N6 3+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 BTB C8 H19 N O5 FORMUL 9 HOH *550(H2 O) HELIX 1 AA1 THR A 43 ASP A 56 1 14 HELIX 2 AA2 HIS A 59 GLY A 64 1 6 HELIX 3 AA3 ALA A 70 ILE A 77 1 8 HELIX 4 AA4 MET A 92 ASN A 100 1 9 HELIX 5 AA5 LEU A 109 LEU A 130 1 22 HELIX 6 AA6 THR A 137 PHE A 163 1 27 HELIX 7 AA7 THR A 184 SER A 202 1 19 HELIX 8 AA8 ASP A 221 LEU A 225 5 5 HELIX 9 AA9 THR A 229 ASN A 245 1 17 HELIX 10 AB1 ASP A 246 SER A 248 5 3 HELIX 11 AB2 ARG A 249 SER A 263 1 15 HELIX 12 AB3 SER A 271 TRP A 276 1 6 HELIX 13 AB4 GLU A 277 GLU A 281 5 5 HELIX 14 AB5 VAL A 311 ILE A 316 1 6 HELIX 15 AB6 ARG A 340 MET A 346 1 7 HELIX 16 AB7 LYS A 352 THR A 357 1 6 HELIX 17 AB8 TYR A 384 PHE A 388 5 5 HELIX 18 AB9 TYR A 408 ARG A 421 1 14 HELIX 19 AC1 GLY A 428 ALA A 441 1 14 HELIX 20 AC2 THR A 450 PHE A 462 1 13 HELIX 21 AC3 LYS A 467 ALA A 475 1 9 HELIX 22 AC4 GLU A 476 ILE A 478 5 3 HELIX 23 AC5 SER A 482 ASN A 485 5 4 HELIX 24 AC6 LYS A 486 LEU A 491 1 6 HELIX 25 AC7 THR A 504 LYS A 508 5 5 HELIX 26 AC8 ALA A 513 ASP A 520 1 8 HELIX 27 AC9 ASP B 44 ASP B 56 1 13 HELIX 28 AD1 HIS B 59 GLY B 64 1 6 HELIX 29 AD2 ALA B 70 ILE B 77 1 8 HELIX 30 AD3 MET B 92 ASN B 100 1 9 HELIX 31 AD4 LEU B 109 LEU B 130 1 22 HELIX 32 AD5 THR B 137 PHE B 163 1 27 HELIX 33 AD6 THR B 184 LYS B 203 1 20 HELIX 34 AD7 ASP B 221 LEU B 225 5 5 HELIX 35 AD8 THR B 229 ASN B 245 1 17 HELIX 36 AD9 ASP B 246 SER B 248 5 3 HELIX 37 AE1 ARG B 249 SER B 263 1 15 HELIX 38 AE2 PHE B 272 GLU B 281 5 10 HELIX 39 AE3 VAL B 311 ILE B 316 1 6 HELIX 40 AE4 ARG B 340 MET B 346 1 7 HELIX 41 AE5 LYS B 352 THR B 357 1 6 HELIX 42 AE6 TYR B 384 PHE B 388 5 5 HELIX 43 AE7 TYR B 408 ARG B 421 1 14 HELIX 44 AE8 GLY B 428 ALA B 441 1 14 HELIX 45 AE9 THR B 450 PHE B 462 1 13 HELIX 46 AF1 LYS B 467 ALA B 475 1 9 HELIX 47 AF2 GLU B 476 ILE B 478 5 3 HELIX 48 AF3 SER B 482 ASN B 485 5 4 HELIX 49 AF4 LYS B 486 LEU B 491 1 6 HELIX 50 AF5 THR B 504 LYS B 508 5 5 HELIX 51 AF6 ALA B 513 ASP B 520 1 8 SHEET 1 AA1 2 SER A 286 ILE A 290 0 SHEET 2 AA1 2 TYR A 403 ARG A 407 -1 O TYR A 403 N ILE A 290 SHEET 1 AA2 2 CYS A 358 VAL A 360 0 SHEET 2 AA2 2 ILE A 376 LEU A 378 -1 O TRP A 377 N TRP A 359 SHEET 1 AA3 2 SER B 286 ILE B 290 0 SHEET 2 AA3 2 TYR B 403 ARG B 407 -1 O TYR B 403 N ILE B 290 SHEET 1 AA4 2 CYS B 358 VAL B 360 0 SHEET 2 AA4 2 ILE B 376 LEU B 378 -1 O TRP B 377 N TRP B 359 SITE 1 AC1 8 LEU A 260 ILE A 261 SER A 263 PHE A 266 SITE 2 AC1 8 TYR A 408 PRO A 521 VAL A 524 HOH A 855 SITE 1 AC2 5 MET A 158 HIS A 161 GLU A 239 TYR A 405 SITE 2 AC2 5 HOH A 836 SITE 1 AC3 6 LEU B 260 ILE B 261 SER B 263 PHE B 266 SITE 2 AC3 6 TYR B 408 PRO B 521 SITE 1 AC4 7 ASN B 157 MET B 158 HIS B 161 GLU B 239 SITE 2 AC4 7 TYR B 405 HOH B 789 HOH B 844 SITE 1 AC5 3 ASP A 262 ASN B 448 ASP B 453 SITE 1 AC6 6 ASP A 91 TRP A 334 ARG A 370 ASP B 91 SITE 2 AC6 6 TRP B 334 ARG B 370 CRYST1 76.270 53.583 126.850 90.00 93.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013111 0.000000 0.000696 0.00000 SCALE2 0.000000 0.018663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007894 0.00000