HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 28-NOV-20 7KVS TITLE HUMAN CYP3A4 BOUND TO AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 3A4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,4-CINEOLE 2-EXO-MONOOXYGENASE,8-CINEOLE 2-EXO- COMPND 5 MONOOXYGENASE,ALBENDAZOLE MONOOXYGENASE (SULFOXIDE-FORMING), COMPND 6 ALBENDAZOLE SULFOXIDASE,CYPIIIA3,CYPIIIA4,CHOLESTEROL 25-HYDROXYLASE, COMPND 7 CYTOCHROME P450 3A3,CYTOCHROME P450 HLP,CYTOCHROME P450 NF-25, COMPND 8 CYTOCHROME P450-PCN1,NIFEDIPINE OXIDASE,QUININE 3-MONOOXYGENASE; COMPND 9 EC: 1.14.14.1,1.14.14.56,1.14.14.73,1.14.14.55; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: C41; SOURCE 6 GENE: CYP3A4, CYP3A3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CYP3A4, INHIBITOR, COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.SEVRIOUKOVA REVDAT 3 18-OCT-23 7KVS 1 REMARK REVDAT 2 03-FEB-21 7KVS 1 JRNL REVDAT 1 20-JAN-21 7KVS 0 JRNL AUTH E.R.SAMUELS,I.F.SEVRIOUKOVA JRNL TITL RATIONAL DESIGN OF CYP3A4 INHIBITORS: A ONE-ATOM LINKER JRNL TITL 2 ELONGATION IN RITONAVIR-LIKE COMPOUNDS LEADS TO A MARKED JRNL TITL 3 IMPROVEMENT IN THE BINDING STRENGTH. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 33467005 JRNL DOI 10.3390/IJMS22020852 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 38895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5800 - 5.8720 0.97 2922 141 0.1941 0.2513 REMARK 3 2 5.8720 - 4.6634 0.96 2824 160 0.2168 0.2445 REMARK 3 3 4.6634 - 4.0746 0.96 2811 145 0.2073 0.2477 REMARK 3 4 4.0746 - 3.7024 0.99 2940 113 0.2301 0.2559 REMARK 3 5 3.7024 - 3.4372 0.99 2892 146 0.2620 0.2860 REMARK 3 6 3.4372 - 3.2347 0.96 2813 135 0.2726 0.3085 REMARK 3 7 3.2347 - 3.0727 0.93 2729 131 0.2874 0.3862 REMARK 3 8 3.0727 - 2.9390 0.98 2847 154 0.3032 0.3217 REMARK 3 9 2.9390 - 2.8259 0.98 2861 157 0.3067 0.3307 REMARK 3 10 2.8259 - 2.7284 0.99 2893 139 0.3176 0.3718 REMARK 3 11 2.7284 - 2.6431 0.98 2876 141 0.3423 0.3306 REMARK 3 12 2.6431 - 2.5676 0.99 2864 132 0.3531 0.3719 REMARK 3 13 2.5676 - 2.5000 0.96 2791 138 0.3789 0.4205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7644 REMARK 3 ANGLE : 0.500 10353 REMARK 3 CHIRALITY : 0.038 1132 REMARK 3 PLANARITY : 0.004 1294 REMARK 3 DIHEDRAL : 12.800 4591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.7921 -26.0721 107.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.5485 T22: 0.5834 REMARK 3 T33: 0.5248 T12: -0.0099 REMARK 3 T13: -0.0458 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.0688 L22: 1.9070 REMARK 3 L33: 2.6210 L12: -0.4358 REMARK 3 L13: 0.2782 L23: -1.5489 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: -0.4327 S13: -0.0504 REMARK 3 S21: 0.6308 S22: 0.0646 S23: -0.0520 REMARK 3 S31: -0.5371 S32: -0.2266 S33: 0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 77.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, LITHIUM SULFATE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.25500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 TYR A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 THR A 264 REMARK 465 GLN A 265 REMARK 465 LYS A 266 REMARK 465 HIS A 267 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 ASP A 497 REMARK 465 GLY A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 TYR B 23 REMARK 465 LEU B 24 REMARK 465 TYR B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 HIS B 28 REMARK 465 SER B 195 REMARK 465 LEU B 196 REMARK 465 ASN B 197 REMARK 465 ASN B 198 REMARK 465 PRO B 199 REMARK 465 GLN B 200 REMARK 465 ASP B 201 REMARK 465 ARG B 260 REMARK 465 LEU B 261 REMARK 465 GLU B 262 REMARK 465 ASP B 263 REMARK 465 THR B 264 REMARK 465 GLN B 265 REMARK 465 LYS B 266 REMARK 465 HIS B 267 REMARK 465 ARG B 268 REMARK 465 VAL B 269 REMARK 465 ASN B 280 REMARK 465 SER B 281 REMARK 465 LYS B 282 REMARK 465 GLU B 283 REMARK 465 THR B 284 REMARK 465 GLU B 285 REMARK 465 SER B 286 REMARK 465 HIS B 287 REMARK 465 LYS B 288 REMARK 465 ARG B 496 REMARK 465 ASP B 497 REMARK 465 GLY B 498 REMARK 465 THR B 499 REMARK 465 VAL B 500 REMARK 465 SER B 501 REMARK 465 GLY B 502 REMARK 465 ALA B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 465 HIS B 506 REMARK 465 HIS B 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 46 -61.60 65.03 REMARK 500 VAL A 101 -55.36 -126.61 REMARK 500 PHE A 102 73.55 -102.38 REMARK 500 ASP A 123 -124.12 61.66 REMARK 500 PHE A 137 56.18 -117.72 REMARK 500 LYS A 168 135.42 -172.97 REMARK 500 PRO A 169 172.45 -53.84 REMARK 500 LEU A 196 -8.99 74.36 REMARK 500 ASN A 197 133.88 64.14 REMARK 500 GLN A 200 66.01 -102.50 REMARK 500 LYS A 209 11.35 -65.88 REMARK 500 ARG A 212 78.38 -156.64 REMARK 500 VAL A 269 68.17 63.90 REMARK 500 ASP A 270 -158.30 -91.67 REMARK 500 ALA A 289 -157.33 -151.30 REMARK 500 MET A 371 -54.78 70.20 REMARK 500 GLU A 410 75.07 53.30 REMARK 500 LEU A 479 5.10 -68.84 REMARK 500 PHE B 46 -53.49 68.70 REMARK 500 GLU B 97 36.75 -90.64 REMARK 500 VAL B 101 -73.32 -115.21 REMARK 500 ASP B 123 -118.45 62.97 REMARK 500 PHE B 137 55.44 -116.20 REMARK 500 LYS B 168 115.56 -167.85 REMARK 500 LEU B 211 -73.29 -91.91 REMARK 500 ASN B 237 75.23 58.24 REMARK 500 MET B 371 -58.47 68.02 REMARK 500 PRO B 397 92.74 -65.45 REMARK 500 ARG B 440 55.29 -117.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 442 SG REMARK 620 2 HEM A 601 NA 95.8 REMARK 620 3 HEM A 601 NB 83.6 89.2 REMARK 620 4 HEM A 601 NC 88.8 175.3 90.6 REMARK 620 5 HEM A 601 ND 98.7 90.1 177.7 89.8 REMARK 620 6 X74 A 605 N30 164.7 90.6 82.6 84.7 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 442 SG REMARK 620 2 HEM B 602 NA 95.5 REMARK 620 3 HEM B 602 NB 83.8 89.6 REMARK 620 4 HEM B 602 NC 91.2 173.2 90.0 REMARK 620 5 HEM B 602 ND 100.4 89.7 175.8 90.1 REMARK 620 6 X74 B 603 N30 162.4 84.7 78.7 88.6 97.1 REMARK 620 N 1 2 3 4 5 DBREF 7KVS A 21 503 UNP P08684 CP3A4_HUMAN 1 503 DBREF 7KVS B 21 503 UNP P08684 CP3A4_HUMAN 1 503 SEQADV 7KVS A UNP P08684 LEU 3 DELETION SEQADV 7KVS A UNP P08684 ILE 4 DELETION SEQADV 7KVS A UNP P08684 PRO 5 DELETION SEQADV 7KVS A UNP P08684 ASP 6 DELETION SEQADV 7KVS A UNP P08684 LEU 7 DELETION SEQADV 7KVS A UNP P08684 ALA 8 DELETION SEQADV 7KVS A UNP P08684 MET 9 DELETION SEQADV 7KVS A UNP P08684 GLU 10 DELETION SEQADV 7KVS A UNP P08684 THR 11 DELETION SEQADV 7KVS A UNP P08684 TRP 12 DELETION SEQADV 7KVS A UNP P08684 LEU 13 DELETION SEQADV 7KVS A UNP P08684 LEU 14 DELETION SEQADV 7KVS A UNP P08684 LEU 15 DELETION SEQADV 7KVS A UNP P08684 ALA 16 DELETION SEQADV 7KVS A UNP P08684 VAL 17 DELETION SEQADV 7KVS A UNP P08684 SER 18 DELETION SEQADV 7KVS A UNP P08684 LEU 19 DELETION SEQADV 7KVS A UNP P08684 VAL 20 DELETION SEQADV 7KVS A UNP P08684 LEU 21 DELETION SEQADV 7KVS A UNP P08684 LEU 22 DELETION SEQADV 7KVS ALA A 421 UNP P08684 LYS 421 ENGINEERED MUTATION SEQADV 7KVS ALA A 424 UNP P08684 LYS 424 ENGINEERED MUTATION SEQADV 7KVS HIS A 504 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS A 505 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS A 506 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS A 507 UNP P08684 EXPRESSION TAG SEQADV 7KVS B UNP P08684 LEU 3 DELETION SEQADV 7KVS B UNP P08684 ILE 4 DELETION SEQADV 7KVS B UNP P08684 PRO 5 DELETION SEQADV 7KVS B UNP P08684 ASP 6 DELETION SEQADV 7KVS B UNP P08684 LEU 7 DELETION SEQADV 7KVS B UNP P08684 ALA 8 DELETION SEQADV 7KVS B UNP P08684 MET 9 DELETION SEQADV 7KVS B UNP P08684 GLU 10 DELETION SEQADV 7KVS B UNP P08684 THR 11 DELETION SEQADV 7KVS B UNP P08684 TRP 12 DELETION SEQADV 7KVS B UNP P08684 LEU 13 DELETION SEQADV 7KVS B UNP P08684 LEU 14 DELETION SEQADV 7KVS B UNP P08684 LEU 15 DELETION SEQADV 7KVS B UNP P08684 ALA 16 DELETION SEQADV 7KVS B UNP P08684 VAL 17 DELETION SEQADV 7KVS B UNP P08684 SER 18 DELETION SEQADV 7KVS B UNP P08684 LEU 19 DELETION SEQADV 7KVS B UNP P08684 VAL 20 DELETION SEQADV 7KVS B UNP P08684 LEU 21 DELETION SEQADV 7KVS B UNP P08684 LEU 22 DELETION SEQADV 7KVS ALA B 421 UNP P08684 LYS 421 ENGINEERED MUTATION SEQADV 7KVS ALA B 424 UNP P08684 LYS 424 ENGINEERED MUTATION SEQADV 7KVS HIS B 504 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS B 505 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS B 506 UNP P08684 EXPRESSION TAG SEQADV 7KVS HIS B 507 UNP P08684 EXPRESSION TAG SEQRES 1 A 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 A 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 A 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 A 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 A 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 A 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 A 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 A 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 A 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 A 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 A 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 A 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 A 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 A 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 A 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 A 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 A 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 A 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 A 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 A 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 A 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 A 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 A 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 A 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 A 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 A 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 A 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 A 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 A 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 A 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 A 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER ALA LYS ASN SEQRES 32 A 487 ALA ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 A 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 A 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 A 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 A 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 A 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 A 487 GLY ALA HIS HIS HIS HIS SEQRES 1 B 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 B 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 B 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 B 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 B 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 B 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 B 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 B 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 B 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 B 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 B 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 B 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 B 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 B 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 B 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 B 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 B 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 B 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 B 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 B 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 B 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 B 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 B 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 B 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 B 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 B 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 B 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 B 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 B 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 B 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 B 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER ALA LYS ASN SEQRES 32 B 487 ALA ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 B 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 B 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 B 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 B 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 B 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 B 487 GLY ALA HIS HIS HIS HIS HET HEM A 601 43 HET SO4 A 602 5 HET GOL A 603 6 HET EDO A 604 4 HET X74 A 605 42 HET EDO A 606 4 HET GOL B 601 6 HET HEM B 602 43 HET X74 B 603 42 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM X74 TERT-BUTYL [(2R)-1-(NAPHTHALEN-1-YL)-3-{[(2R)-1-OXO-3- HETNAM 2 X74 PHENYL-1-{[3-(PYRIDIN-3-YL)PROPYL]AMINO}PROPAN-2- HETNAM 3 X74 YL]SULFANYL}PROPAN-2-YL]CARBAMATE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 7 X74 2(C35 H41 N3 O3 S) FORMUL 12 HOH *47(H2 O) HELIX 1 AA1 HIS A 28 HIS A 30 5 3 HELIX 2 AA2 GLY A 31 LEU A 36 1 6 HELIX 3 AA3 ASN A 49 LYS A 55 5 7 HELIX 4 AA4 GLY A 56 GLY A 69 1 14 HELIX 5 AA5 ASP A 86 VAL A 95 1 10 HELIX 6 AA6 VAL A 111 ALA A 117 5 7 HELIX 7 AA7 ASP A 123 SER A 134 1 12 HELIX 8 AA8 PRO A 135 PHE A 137 5 3 HELIX 9 AA9 THR A 138 GLU A 163 1 26 HELIX 10 AB1 LEU A 172 GLY A 190 1 19 HELIX 11 AB2 ASP A 201 LYS A 209 1 9 HELIX 12 AB3 ASP A 217 PHE A 226 1 10 HELIX 13 AB4 LEU A 229 LEU A 236 1 8 HELIX 14 AB5 PRO A 242 MET A 256 1 15 HELIX 15 AB6 ASP A 270 SER A 278 1 9 HELIX 16 AB7 SER A 291 THR A 323 1 33 HELIX 17 AB8 HIS A 324 LEU A 339 1 16 HELIX 18 AB9 THR A 346 MET A 353 1 8 HELIX 19 AC1 MET A 353 PHE A 367 1 15 HELIX 20 AC2 PRO A 397 ARG A 403 1 7 HELIX 21 AC3 LEU A 415 SER A 420 5 6 HELIX 22 AC4 ASN A 423 ILE A 427 5 5 HELIX 23 AC5 GLY A 444 GLN A 461 1 18 HELIX 24 AC6 GLY B 31 LEU B 36 1 6 HELIX 25 AC7 ASN B 49 LYS B 55 5 7 HELIX 26 AC8 GLY B 56 TYR B 68 1 13 HELIX 27 AC9 ASP B 86 VAL B 95 1 10 HELIX 28 AD1 VAL B 111 ALA B 117 5 7 HELIX 29 AD2 ASP B 123 SER B 134 1 12 HELIX 30 AD3 PRO B 135 PHE B 137 5 3 HELIX 31 AD4 THR B 138 GLU B 163 1 26 HELIX 32 AD5 LEU B 172 SER B 188 1 17 HELIX 33 AD6 PHE B 203 LYS B 208 1 6 HELIX 34 AD7 ASP B 217 PHE B 226 1 10 HELIX 35 AD8 LEU B 229 VAL B 235 1 7 HELIX 36 AD9 PRO B 242 LYS B 257 1 16 HELIX 37 AE1 PHE B 271 SER B 278 1 8 HELIX 38 AE2 SER B 291 HIS B 324 1 34 HELIX 39 AE3 HIS B 324 LEU B 339 1 16 HELIX 40 AE4 PRO B 340 ALA B 343 5 4 HELIX 41 AE5 THR B 346 MET B 353 1 8 HELIX 42 AE6 MET B 353 PHE B 367 1 15 HELIX 43 AE7 SER B 398 HIS B 402 1 5 HELIX 44 AE8 LEU B 415 SER B 420 5 6 HELIX 45 AE9 ASN B 423 ILE B 427 5 5 HELIX 46 AF1 SER B 437 ASN B 441 5 5 HELIX 47 AF2 GLY B 444 GLN B 461 1 18 SHEET 1 AA1 4 VAL A 71 ASP A 76 0 SHEET 2 AA1 4 GLN A 79 ILE A 84 -1 O VAL A 81 N PHE A 74 SHEET 3 AA1 4 VAL A 393 ILE A 396 1 O MET A 395 N LEU A 82 SHEET 4 AA1 4 LEU A 373 VAL A 376 -1 N LEU A 373 O ILE A 396 SHEET 1 AA2 3 VAL A 170 THR A 171 0 SHEET 2 AA2 3 VAL A 490 SER A 495 -1 O LEU A 491 N VAL A 170 SHEET 3 AA2 3 PHE A 463 LYS A 466 -1 N LYS A 466 O LYS A 492 SHEET 1 AA3 2 VAL A 381 ILE A 383 0 SHEET 2 AA3 2 MET A 386 ILE A 388 -1 O ILE A 388 N VAL A 381 SHEET 1 AA4 4 VAL B 71 ASP B 76 0 SHEET 2 AA4 4 GLN B 79 ILE B 84 -1 O ALA B 83 N TRP B 72 SHEET 3 AA4 4 VAL B 393 PRO B 397 1 O MET B 395 N LEU B 82 SHEET 4 AA4 4 ARG B 372 VAL B 376 -1 N ARG B 375 O VAL B 394 SHEET 1 AA5 3 VAL B 170 THR B 171 0 SHEET 2 AA5 3 VAL B 490 GLU B 494 -1 O LEU B 491 N VAL B 170 SHEET 3 AA5 3 SER B 464 LYS B 466 -1 N LYS B 466 O LYS B 492 SHEET 1 AA6 2 VAL B 381 ILE B 383 0 SHEET 2 AA6 2 MET B 386 ILE B 388 -1 O MET B 386 N ILE B 383 LINK SG CYS A 442 FE HEM A 601 1555 1555 2.40 LINK FE HEM A 601 N30 X74 A 605 1555 1555 2.09 LINK SG CYS B 442 FE HEM B 602 1555 1555 2.40 LINK FE HEM B 602 N30 X74 B 603 1555 1555 2.08 CISPEP 1 GLY A 109 PRO A 110 0 -1.21 CISPEP 2 ASN A 197 ASN A 198 0 9.98 CISPEP 3 SER A 259 ARG A 260 0 4.26 CISPEP 4 LYS A 288 ALA A 289 0 -1.48 CISPEP 5 ILE A 473 PRO A 474 0 0.07 CISPEP 6 GLY B 109 PRO B 110 0 -1.49 CISPEP 7 ILE B 473 PRO B 474 0 0.38 CRYST1 154.510 98.220 93.480 90.00 124.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006472 0.000000 0.004427 0.00000 SCALE2 0.000000 0.010181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012960 0.00000