HEADER LIGASE 29-NOV-20 7KVY TITLE CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH ADENOSINE- TITLE 2 5'-ETHYLPHOSPHATE AND CO-ENZYME A FROM COCCIDIOIDES IMMITIS RS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COENZYME A SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COIMA.00629.A.FS11; COMPND 5 EC: 6.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS (STRAIN RS); SOURCE 3 ORGANISM_COMMON: VALLEY FEVER FUNGUS; SOURCE 4 ORGANISM_TAXID: 246410; SOURCE 5 STRAIN: RS; SOURCE 6 GENE: CIMG_01510; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: COIMA.00629.A.FS11 KEYWDS SSGCID, ACETYL-COENZYME A SYNTHETASE, ETHYL-AMP, COA, CO-ENZYME A, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7KVY 1 REMARK REVDAT 1 30-DEC-20 7KVY 0 JRNL AUTH D.FOX III,J.ABENDROTH,N.D.DEBOUVER,T.E.ESAN,T.J.HAGEN, JRNL AUTH 2 D.J.KRYSAN,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH JRNL TITL 2 ADENOSINE-5'-ETHYLPHOSPHATE AND CO-ENZYME A FROM JRNL TITL 3 COCCIDIOIDES IMMITIS RS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3100 - 4.5800 1.00 4146 148 0.1517 0.1771 REMARK 3 2 4.5800 - 3.6400 1.00 4099 139 0.1333 0.1522 REMARK 3 3 3.6300 - 3.1800 1.00 4104 146 0.1558 0.1875 REMARK 3 4 3.1700 - 2.8800 1.00 4078 135 0.1676 0.2010 REMARK 3 5 2.8800 - 2.6800 1.00 4075 141 0.1706 0.2295 REMARK 3 6 2.6800 - 2.5200 1.00 4113 142 0.1737 0.2149 REMARK 3 7 2.5200 - 2.3900 1.00 4057 146 0.1696 0.2049 REMARK 3 8 2.3900 - 2.2900 1.00 4081 141 0.1617 0.1803 REMARK 3 9 2.2900 - 2.2000 1.00 4082 140 0.1784 0.2212 REMARK 3 10 2.2000 - 2.1300 1.00 4058 145 0.1910 0.2132 REMARK 3 11 2.1300 - 2.0600 1.00 4080 144 0.2023 0.2276 REMARK 3 12 2.0600 - 2.0000 1.00 4060 140 0.2142 0.2542 REMARK 3 13 2.0000 - 1.9500 1.00 4044 137 0.2418 0.2396 REMARK 3 14 1.9500 - 1.9000 1.00 4066 146 0.2602 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5167 REMARK 3 ANGLE : 0.827 7045 REMARK 3 CHIRALITY : 0.055 764 REMARK 3 PLANARITY : 0.007 900 REMARK 3 DIHEDRAL : 13.603 1816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3109 35.4028 18.4885 REMARK 3 T TENSOR REMARK 3 T11: 0.6355 T22: 0.5800 REMARK 3 T33: 0.9182 T12: 0.0236 REMARK 3 T13: -0.3989 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 1.3392 L22: 2.2055 REMARK 3 L33: 1.3273 L12: -0.7072 REMARK 3 L13: -0.0568 L23: 0.7781 REMARK 3 S TENSOR REMARK 3 S11: -0.3010 S12: -0.4421 S13: 0.6584 REMARK 3 S21: 0.5515 S22: 0.2860 S23: -1.4045 REMARK 3 S31: -0.2258 S32: 0.5228 S33: -0.0733 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.3067 39.7597 1.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.2616 REMARK 3 T33: 0.1935 T12: -0.0221 REMARK 3 T13: -0.0153 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.9200 L22: 2.5659 REMARK 3 L33: 0.8453 L12: -0.4819 REMARK 3 L13: -0.0987 L23: -0.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.0397 S13: 0.0935 REMARK 3 S21: 0.1358 S22: 0.0624 S23: -0.2898 REMARK 3 S31: -0.0313 S32: -0.0767 S33: -0.0169 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3182 44.5848 -18.3288 REMARK 3 T TENSOR REMARK 3 T11: 0.4097 T22: 0.3430 REMARK 3 T33: 0.2616 T12: -0.0127 REMARK 3 T13: 0.1226 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 1.0747 L22: 2.0539 REMARK 3 L33: 1.3197 L12: -0.3457 REMARK 3 L13: -0.2474 L23: -0.3895 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.3366 S13: 0.1544 REMARK 3 S21: -0.6351 S22: -0.0294 S23: -0.4412 REMARK 3 S31: -0.0249 S32: -0.0331 S33: -0.0307 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3985 42.9481 2.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.2462 REMARK 3 T33: 0.5207 T12: -0.0548 REMARK 3 T13: -0.0531 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.3812 L22: 3.0288 REMARK 3 L33: 0.8572 L12: -0.9909 REMARK 3 L13: -0.0605 L23: -0.1339 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.0569 S13: 0.3981 REMARK 3 S21: 0.1844 S22: 0.0347 S23: -1.1579 REMARK 3 S31: -0.1281 S32: 0.1733 S33: 0.0095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1359 19.1090 1.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2146 REMARK 3 T33: 0.3587 T12: 0.0027 REMARK 3 T13: -0.0068 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.9119 L22: 2.7204 REMARK 3 L33: 2.5409 L12: -0.6567 REMARK 3 L13: 0.7489 L23: 0.4962 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.0734 S13: -0.1995 REMARK 3 S21: 0.1650 S22: 0.0229 S23: -0.5977 REMARK 3 S31: 0.3174 S32: 0.2600 S33: -0.0348 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3808 28.2864 -10.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.3755 T22: 0.4398 REMARK 3 T33: 0.7859 T12: 0.0129 REMARK 3 T13: 0.1620 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.6986 L22: 2.5779 REMARK 3 L33: 2.8842 L12: -0.2381 REMARK 3 L13: 0.1974 L23: -1.0736 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: 0.2527 S13: 0.1233 REMARK 3 S21: -0.3765 S22: 0.0069 S23: -1.0648 REMARK 3 S31: 0.0797 S32: 0.3656 S33: -0.0506 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 570 THROUGH 668 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6805 31.6588 -24.8312 REMARK 3 T TENSOR REMARK 3 T11: 0.6461 T22: 0.8635 REMARK 3 T33: 0.9698 T12: -0.0324 REMARK 3 T13: 0.3611 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.0221 L22: 1.0241 REMARK 3 L33: 4.4120 L12: 0.3439 REMARK 3 L13: 0.3974 L23: -0.7421 REMARK 3 S TENSOR REMARK 3 S11: 0.3474 S12: 0.5387 S13: 0.0950 REMARK 3 S21: -0.4586 S22: -0.0170 S23: -0.7375 REMARK 3 S31: -0.2300 S32: 1.1541 S33: -0.2808 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7KCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZATION CONDITIONS AROUND REMARK 280 RIGAKUREAGENTS JCSG H3: 18.32@ PEG3,350, 0.2M LITHIUM ACETATE; REMARK 280 COIMA.00629.A.FS11.PD00401 AT 10 MG/ML + 1MM TCEP (ADDED FIRST) + REMARK 280 1MM ADENOSINE-5'-ETHYLPHOSPHATE + 1MM CO-ENZYMEA; CRYO: 20% REMARK 280 ETHYLENE GLYCOL; TRAY 317944F5, PUCK DZD7-5., PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.98000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.98000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 621 REMARK 465 THR A 622 REMARK 465 ARG A 623 REMARK 465 SER A 624 REMARK 465 GLY A 625 REMARK 465 SER A 637 REMARK 465 GLY A 638 REMARK 465 GLU A 639 REMARK 465 GLU A 640 REMARK 465 ASP A 641 REMARK 465 SER A 642 REMARK 465 LEU A 643 REMARK 465 GLY A 644 REMARK 465 ASP A 645 REMARK 465 ILE A 646 REMARK 465 SER A 647 REMARK 465 THR A 648 REMARK 465 LEU A 649 REMARK 465 SER A 650 REMARK 465 ASP A 651 REMARK 465 PRO A 652 REMARK 465 SER A 653 REMARK 465 VAL A 654 REMARK 465 VAL A 655 REMARK 465 ASN A 656 REMARK 465 LYS A 657 REMARK 465 MET A 669 REMARK 465 ALA A 670 REMARK 465 ALA A 671 REMARK 465 ALA A 672 REMARK 465 ALA A 673 REMARK 465 ALA A 674 REMARK 465 ALA A 675 REMARK 465 ALA A 676 REMARK 465 ALA A 677 REMARK 465 ALA A 678 REMARK 465 VAL A 679 REMARK 465 SER A 680 REMARK 465 ALA A 681 REMARK 465 THR A 682 REMARK 465 ALA A 683 REMARK 465 PRO A 684 REMARK 465 PRO A 685 REMARK 465 ASN A 686 REMARK 465 SER A 687 REMARK 465 THR A 688 REMARK 465 THR A 689 REMARK 465 GLY A 690 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 13 CG1 CG2 REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 VAL A 26 CG1 CG2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLN A 421 CG CD OE1 NE2 REMARK 470 VAL A 567 CG1 CG2 REMARK 470 LEU A 571 CG CD1 CD2 REMARK 470 VAL A 580 CG1 CG2 REMARK 470 LYS A 583 CG CD CE NZ REMARK 470 ASN A 586 CG OD1 ND2 REMARK 470 GLU A 590 CG CD OE1 OE2 REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 VAL A 612 CG1 CG2 REMARK 470 VAL A 613 CG1 CG2 REMARK 470 ILE A 616 CG1 CG2 CD1 REMARK 470 ASP A 617 CG OD1 OD2 REMARK 470 ASP A 618 CG OD1 OD2 REMARK 470 LEU A 619 CG CD1 CD2 REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 MET A 628 CG SD CE REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 631 CG1 CG2 CD1 REMARK 470 ARG A 633 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 634 CG CD CE NZ REMARK 470 ILE A 658 CG1 CG2 CD1 REMARK 470 ILE A 659 CG1 CG2 CD1 REMARK 470 ASP A 660 CG OD1 OD2 REMARK 470 PHE A 662 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 663 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 664 CG CD OE1 OE2 REMARK 470 TRP A 665 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 665 CZ3 CH2 REMARK 470 LYS A 667 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 55 O HOH A 901 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 -153.83 -133.84 REMARK 500 VAL A 100 -68.27 -132.59 REMARK 500 ASP A 107 71.33 -153.39 REMARK 500 HIS A 122 -148.04 -99.64 REMARK 500 THR A 294 -64.21 -101.67 REMARK 500 VAL A 333 -73.42 -102.72 REMARK 500 SER A 348 -158.57 -99.30 REMARK 500 ASN A 389 66.60 -154.73 REMARK 500 TRP A 429 -175.22 -174.24 REMARK 500 THR A 439 146.20 -171.71 REMARK 500 ILE A 444 -56.63 -129.09 REMARK 500 SER A 453 -115.74 68.99 REMARK 500 SER A 453 -113.76 66.30 REMARK 500 ASP A 497 69.82 -153.49 REMARK 500 ASP A 534 -167.77 -110.85 REMARK 500 ASP A 535 45.38 -89.69 REMARK 500 ASP A 587 32.54 -98.78 REMARK 500 ASN A 588 45.48 -146.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 7KVY A 1 690 UNP J3KJC6 J3KJC6_COCIM 2 691 SEQADV 7KVY MET A -15 UNP J3KJC6 INITIATING METHIONINE SEQADV 7KVY HIS A -14 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -13 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -12 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -11 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -10 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -9 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -8 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY HIS A -7 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY GLU A -6 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY ASN A -5 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY LEU A -4 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY TYR A -3 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY PHE A -2 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY GLN A -1 UNP J3KJC6 EXPRESSION TAG SEQADV 7KVY GLY A 0 UNP J3KJC6 EXPRESSION TAG SEQRES 1 A 706 MET HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR SEQRES 2 A 706 PHE GLN GLY SER GLU THR PRO ALA GLU PRO LYS LEU PRO SEQRES 3 A 706 VAL VAL VAL GLU ALA HIS GLN VAL ASP THR PHE ASP VAL SEQRES 4 A 706 PRO GLY VAL PHE TYR GLU ASN HIS PRO HIS GLU PRO HIS SEQRES 5 A 706 LEU SER GLY MET ASN GLU TYR ASN GLN LEU TYR GLN GLN SEQRES 6 A 706 SER ILE ASN ASP PRO ASP THR PHE TRP ALA ARG MET ALA SEQRES 7 A 706 ARG ASP LEU ILE THR PHE GLU LYS ASP PHE ASP LYS THR SEQRES 8 A 706 HIS ILE GLY THR LEU GLU GLY GLY ASP ASN ALA TRP PHE SEQRES 9 A 706 VAL GLY GLY ARG LEU ASN ALA SER PHE ASN CYS VAL ASP SEQRES 10 A 706 ARG HIS ALA MET ARG ASP PRO ASN LYS VAL ALA ILE ILE SEQRES 11 A 706 TYR GLU ALA ASP GLU PRO GLY HIS GLY ARG SER ILE THR SEQRES 12 A 706 TYR ALA GLU LEU LEU LYS GLU VAL SER ARG LEU ALA TRP SEQRES 13 A 706 VAL MET LYS SER GLN GLY VAL ARG LYS GLY ASP THR VAL SEQRES 14 A 706 ALA ILE TYR LEU PRO MET ILE PRO GLU ALA ILE PHE ALA SEQRES 15 A 706 LEU LEU ALA CYS ALA ARG ILE GLY ALA ILE HIS SER VAL SEQRES 16 A 706 VAL PHE ALA GLY PHE SER SER ASP SER LEU ARG ASP ARG SEQRES 17 A 706 THR LEU ASP ALA ARG SER LYS PHE ILE ILE THR THR ASP SEQRES 18 A 706 GLU GLY LYS ARG GLY GLY LYS VAL ILE GLY THR LYS LYS SEQRES 19 A 706 ILE VAL ASP GLU ALA LEU LYS GLN CYS PRO ASP VAL THR SEQRES 20 A 706 ASN CYS LEU VAL PHE LYS ARG THR GLY ALA ASP VAL PRO SEQRES 21 A 706 TRP THR LYS GLY ARG ASP LEU TRP TRP HIS GLU GLU VAL SEQRES 22 A 706 ASP LYS TYR PRO ASN TYR LEU PRO ALA GLU SER MET ASP SEQRES 23 A 706 SER GLU ASP PRO LEU PHE LEU LEU TYR THR SER GLY SER SEQRES 24 A 706 THR GLY LYS PRO LYS GLY VAL MET HIS THR THR ALA GLY SEQRES 25 A 706 TYR LEU VAL GLY ALA ALA ALA THR GLY LYS TYR VAL PHE SEQRES 26 A 706 ASP ILE HIS PRO ALA ASP ARG PHE PHE CYS GLY GLY ASP SEQRES 27 A 706 VAL GLY TRP ILE THR GLY HIS THR TYR VAL VAL TYR ALA SEQRES 28 A 706 PRO LEU LEU LEU GLY CYS THR THR VAL VAL PHE GLU SER SEQRES 29 A 706 THR PRO ALA TYR PRO ASN PHE SER ARG TYR TRP ASP VAL SEQRES 30 A 706 ILE GLU LYS HIS LYS VAL THR GLN PHE TYR VAL ALA PRO SEQRES 31 A 706 THR ALA LEU ARG LEU LEU LYS ARG ALA GLY ASP HIS HIS SEQRES 32 A 706 ILE ASN HIS GLU MET LYS ASP LEU ARG ILE LEU GLY SER SEQRES 33 A 706 VAL GLY GLU PRO ILE ALA ALA GLU VAL TRP LYS TRP TYR SEQRES 34 A 706 HIS GLU VAL VAL GLY LYS ARG GLN ALA HIS ILE VAL ASP SEQRES 35 A 706 THR TYR TRP GLN THR GLU THR GLY SER HIS VAL ILE THR SEQRES 36 A 706 PRO LEU GLY GLY ILE THR PRO THR LYS PRO GLY SER ALA SEQRES 37 A 706 SER LEU PRO PHE PHE GLY ILE ASP PRO VAL ILE LEU ASP SEQRES 38 A 706 PRO VAL THR GLY ALA GLU ILE PRO GLY ASN ASP VAL GLU SEQRES 39 A 706 GLY ILE LEU ALA PHE ARG LYS PRO TRP PRO SER MET ALA SEQRES 40 A 706 ARG THR VAL TRP GLY ASP HIS LYS ARG TYR MET ASP THR SEQRES 41 A 706 TYR LEU ASN VAL TYR LYS GLY PHE TYR PHE THR GLY ASP SEQRES 42 A 706 GLY ALA GLY ARG ASP HIS GLU GLY TYR TYR TRP ILE ARG SEQRES 43 A 706 GLY ARG VAL ASP ASP VAL VAL ASN VAL SER GLY HIS ARG SEQRES 44 A 706 LEU SER THR ALA GLU ILE GLU ALA ALA LEU ILE GLU HIS SEQRES 45 A 706 HIS CYS VAL ALA GLU ALA ALA VAL VAL GLY VAL PRO ASP SEQRES 46 A 706 PRO LEU THR GLY GLN ALA VAL HIS ALA PHE VAL ALA LEU SEQRES 47 A 706 LYS SER GLY ASN ASP ASN ARG GLU GLN LEU GLN LYS GLU SEQRES 48 A 706 LEU ILE MET GLN VAL ARG LYS SER ILE GLY PRO PHE ALA SEQRES 49 A 706 ALA PRO LYS VAL VAL PHE VAL ILE ASP ASP LEU PRO LYS SEQRES 50 A 706 THR ARG SER GLY LYS ILE MET ARG ARG ILE LEU ARG LYS SEQRES 51 A 706 ILE LEU SER GLY GLU GLU ASP SER LEU GLY ASP ILE SER SEQRES 52 A 706 THR LEU SER ASP PRO SER VAL VAL ASN LYS ILE ILE ASP SEQRES 53 A 706 THR PHE HIS GLU TRP LYS LYS ALA MET ALA ALA ALA ALA SEQRES 54 A 706 ALA ALA ALA ALA ALA VAL SER ALA THR ALA PRO PRO ASN SEQRES 55 A 706 SER THR THR GLY HET COA A 801 48 HET WTA A 802 25 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET EDO A 811 4 HETNAM COA COENZYME A HETNAM WTA 5'-O-[(S)-ETHOXY(HYDROXY)PHOSPHORYL]ADENOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 WTA C12 H18 N5 O7 P FORMUL 4 EDO 9(C2 H6 O2) FORMUL 13 HOH *344(H2 O) HELIX 1 AA1 VAL A 12 HIS A 16 5 5 HELIX 2 AA2 PRO A 24 ASN A 30 1 7 HELIX 3 AA3 GLY A 39 ASP A 53 1 15 HELIX 4 AA4 ASP A 53 ILE A 66 1 14 HELIX 5 AA5 ASN A 94 VAL A 100 1 7 HELIX 6 AA6 VAL A 100 ASP A 107 1 8 HELIX 7 AA7 TYR A 128 GLN A 145 1 18 HELIX 8 AA8 ILE A 160 GLY A 174 1 15 HELIX 9 AA9 SER A 185 ALA A 196 1 12 HELIX 10 AB1 GLY A 215 LYS A 225 1 11 HELIX 11 AB2 TRP A 253 ASP A 258 1 6 HELIX 12 AB3 THR A 294 VAL A 308 1 15 HELIX 13 AB4 TRP A 325 VAL A 332 1 8 HELIX 14 AB5 VAL A 333 GLY A 340 1 8 HELIX 15 AB6 SER A 356 LYS A 366 1 11 HELIX 16 AB7 ALA A 373 ARG A 382 1 10 HELIX 17 AB8 ALA A 383 ILE A 388 5 6 HELIX 18 AB9 ALA A 406 VAL A 416 1 11 HELIX 19 AC1 GLN A 430 GLY A 434 5 5 HELIX 20 AC2 ASP A 497 LEU A 506 1 10 HELIX 21 AC3 THR A 546 GLU A 555 1 10 HELIX 22 AC4 ASN A 588 ILE A 604 1 17 HELIX 23 AC5 GLY A 605 ALA A 609 5 5 HELIX 24 AC6 MET A 628 LEU A 636 1 9 HELIX 25 AC7 ILE A 659 LYS A 667 1 9 SHEET 1 AA1 2 LYS A 74 ILE A 77 0 SHEET 2 AA1 2 ALA A 86 VAL A 89 -1 O PHE A 88 N THR A 75 SHEET 1 AA2 2 ARG A 92 LEU A 93 0 SHEET 2 AA2 2 MET A 269 ASP A 270 -1 O MET A 269 N LEU A 93 SHEET 1 AA3 7 ARG A 124 THR A 127 0 SHEET 2 AA3 7 VAL A 111 GLU A 116 -1 N TYR A 115 O ARG A 124 SHEET 3 AA3 7 THR A 342 PHE A 346 1 O VAL A 345 N GLU A 116 SHEET 4 AA3 7 ARG A 316 CYS A 319 1 N PHE A 317 O THR A 342 SHEET 5 AA3 7 GLN A 369 VAL A 372 1 O GLN A 369 N PHE A 318 SHEET 6 AA3 7 ILE A 397 VAL A 401 1 O GLY A 399 N PHE A 370 SHEET 7 AA3 7 HIS A 423 THR A 427 1 O HIS A 423 N LEU A 398 SHEET 1 AA4 8 ASP A 250 TRP A 252 0 SHEET 2 AA4 8 ASN A 232 PHE A 236 1 N VAL A 235 O LEU A 251 SHEET 3 AA4 8 PHE A 200 THR A 204 1 N THR A 203 O PHE A 236 SHEET 4 AA4 8 THR A 152 TYR A 156 1 N TYR A 156 O ILE A 202 SHEET 5 AA4 8 ILE A 176 VAL A 179 1 O SER A 178 N VAL A 153 SHEET 6 AA4 8 PRO A 274 THR A 280 1 O LEU A 277 N HIS A 177 SHEET 7 AA4 8 LYS A 288 THR A 293 -1 O HIS A 292 N LEU A 275 SHEET 8 AA4 8 THR A 493 VAL A 494 -1 O THR A 493 N MET A 291 SHEET 1 AA5 2 GLY A 207 ARG A 209 0 SHEET 2 AA5 2 LYS A 212 ILE A 214 -1 O ILE A 214 N GLY A 207 SHEET 1 AA6 4 PRO A 461 LEU A 464 0 SHEET 2 AA6 4 VAL A 477 PHE A 483 -1 O ILE A 480 N LEU A 464 SHEET 3 AA6 4 TYR A 513 ARG A 521 -1 O ASP A 517 N LEU A 481 SHEET 4 AA6 4 TYR A 527 ARG A 532 -1 O ARG A 530 N GLY A 518 SHEET 1 AA7 2 VAL A 536 VAL A 539 0 SHEET 2 AA7 2 HIS A 542 SER A 545 -1 O LEU A 544 N VAL A 537 SHEET 1 AA8 3 VAL A 559 ASP A 569 0 SHEET 2 AA8 3 GLY A 573 LEU A 582 -1 O PHE A 579 N ALA A 563 SHEET 3 AA8 3 VAL A 612 ILE A 616 1 O PHE A 614 N ALA A 578 CISPEP 1 TYR A 352 PRO A 353 0 -1.65 CRYST1 106.940 106.940 115.960 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009351 0.005399 0.000000 0.00000 SCALE2 0.000000 0.010798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000