HEADER SUGAR BINDING PROTEIN 30-NOV-20 7KWB TITLE SURFACE GLYCAN-BINDING PROTEIN B FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: BTSGBP-B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: HMPREF2534_00387; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBM, SUGAR BINDING PROTEIN, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAMURA,H.BRUMER,F.VAN PETEGEM REVDAT 4 06-MAR-24 7KWB 1 REMARK REVDAT 3 21-JUL-21 7KWB 1 JRNL REVDAT 2 03-MAR-21 7KWB 1 JRNL REVDAT 1 17-FEB-21 7KWB 0 JRNL AUTH K.TAMURA,G.DEJEAN,F.VAN PETEGEM,H.BRUMER JRNL TITL DISTINCT PROTEIN ARCHITECTURES MEDIATE SPECIES-SPECIFIC JRNL TITL 2 BETA-GLUCAN BINDING AND METABOLISM IN THE HUMAN GUT JRNL TITL 3 MICROBIOTA. JRNL REF J.BIOL.CHEM. V. 296 00415 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33587952 JRNL DOI 10.1016/J.JBC.2021.100415 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.55000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.367 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.798 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6274 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5376 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8607 ; 1.266 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12464 ; 1.097 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 807 ; 7.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;36.326 ;25.477 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 868 ;12.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 897 ; 0.035 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7183 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1266 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7KWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.4, 1.3M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.14750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.14750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 87.05050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.07050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 87.05050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.07050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.14750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 87.05050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.07050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.14750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 87.05050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.07050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 TYR A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 MET A 14 REMARK 465 LEU A 15 REMARK 465 THR A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 CYS A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 SER A 28 REMARK 465 PHE A 29 REMARK 465 THR A 30 REMARK 465 SER A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 GLU A 34 REMARK 465 ALA A 35 REMARK 465 GLY A 36 REMARK 465 ILE A 37 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 ILE B 4 REMARK 465 TYR B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 ILE B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 MET B 14 REMARK 465 LEU B 15 REMARK 465 THR B 16 REMARK 465 LEU B 17 REMARK 465 ILE B 18 REMARK 465 LEU B 19 REMARK 465 ASN B 20 REMARK 465 ILE B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 CYS B 24 REMARK 465 SER B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 SER B 28 REMARK 465 PHE B 29 REMARK 465 THR B 30 REMARK 465 SER B 31 REMARK 465 PRO B 32 REMARK 465 ASN B 33 REMARK 465 GLU B 34 REMARK 465 ALA B 35 REMARK 465 GLY B 36 REMARK 465 ILE B 37 REMARK 465 PRO B 38 REMARK 465 VAL B 39 REMARK 465 VAL B 40 REMARK 465 SER B 41 REMARK 465 ASP B 42 REMARK 465 TYR B 43 REMARK 465 GLU B 44 REMARK 465 PHE B 62 REMARK 465 GLN B 63 REMARK 465 GLY B 64 REMARK 465 GLN B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 67 REMARK 465 VAL B 68 REMARK 465 MET B 69 REMARK 465 PRO B 70 REMARK 465 ILE B 71 REMARK 465 GLY B 76 REMARK 465 LYS B 77 REMARK 465 ASN B 78 REMARK 465 LYS B 100 REMARK 465 ILE B 101 REMARK 465 ALA B 102 REMARK 465 ASN B 103 REMARK 465 SER B 104 REMARK 465 ASN B 105 REMARK 465 GLY B 106 REMARK 465 VAL B 107 REMARK 465 SER B 108 REMARK 465 ASP B 109 REMARK 465 ARG B 110 REMARK 465 ALA B 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 39 CG1 CG2 REMARK 470 TYR A 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 VAL A 68 CG1 CG2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 PHE A 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 107 CG1 CG2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLN A 292 CG CD OE1 NE2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 THR A 295 OG1 CG2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 THR A 299 OG1 CG2 REMARK 470 ASP A 304 CG OD1 OD2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 ASN A 308 CG OD1 ND2 REMARK 470 THR A 314 OG1 CG2 REMARK 470 ASN A 354 CG OD1 ND2 REMARK 470 SER A 360 OG REMARK 470 ASP A 361 CG OD1 OD2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 SER A 384 OG REMARK 470 VAL A 393 CG1 CG2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LEU A 411 CG CD1 CD2 REMARK 470 THR A 412 OG1 CG2 REMARK 470 GLU A 415 CG CD OE1 OE2 REMARK 470 ASP A 416 CG OD1 OD2 REMARK 470 ILE A 448 CG1 CG2 CD1 REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 CYS B 46 SG REMARK 470 ILE B 47 CG1 CG2 CD1 REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 73 CG1 CG2 CD1 REMARK 470 ILE B 74 CG1 CG2 CD1 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 TYR B 79 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 80 OG REMARK 470 SER B 81 OG REMARK 470 SER B 82 OG REMARK 470 PHE B 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 84 CG OD1 ND2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 ILE B 112 CG1 CG2 CD1 REMARK 470 ASN B 115 CG OD1 ND2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 GLN B 292 CG CD OE1 NE2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 ASN B 349 CG OD1 ND2 REMARK 470 ASP B 361 CG OD1 OD2 REMARK 470 ARG B 374 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 LEU B 411 CG CD1 CD2 REMARK 470 THR B 412 OG1 CG2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 470 LYS B 450 CG CD CE NZ REMARK 470 ILE B 453 CG1 CG2 CD1 REMARK 470 LEU B 454 CG CD1 CD2 REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 ASP B 459 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -102.49 68.67 REMARK 500 TYR A 79 40.20 -103.21 REMARK 500 SER A 80 -144.34 59.90 REMARK 500 TYR A 89 76.04 -114.05 REMARK 500 ASN A 103 -153.80 -166.51 REMARK 500 TRP A 181 7.50 94.13 REMARK 500 ASN A 213 110.58 -167.98 REMARK 500 GLU A 294 123.56 -36.30 REMARK 500 LEU A 309 -43.99 59.76 REMARK 500 SER A 312 -5.34 97.08 REMARK 500 ILE A 328 -167.71 -102.10 REMARK 500 SER A 384 -72.50 -63.16 REMARK 500 ASP A 451 60.14 67.04 REMARK 500 SER B 80 109.91 71.91 REMARK 500 ASN B 84 72.42 50.65 REMARK 500 TRP B 181 9.86 96.36 REMARK 500 ALA B 183 70.97 -153.41 REMARK 500 ALA B 237 117.91 -35.94 REMARK 500 ASP B 307 48.13 -105.87 REMARK 500 LEU B 309 -36.56 70.01 REMARK 500 ALA B 413 113.22 -35.60 REMARK 500 ASN B 444 68.57 35.82 REMARK 500 ASP B 451 83.87 59.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 455 LYS B 456 148.87 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7KWB A 1 459 UNP A0A139L065_BACT4 DBREF2 7KWB A A0A139L065 8 466 DBREF1 7KWB B 1 459 UNP A0A139L065_BACT4 DBREF2 7KWB B A0A139L065 8 466 SEQRES 1 A 459 MET LYS LYS ILE TYR LYS GLN ILE SER GLY ALA LEU LEU SEQRES 2 A 459 MET LEU THR LEU ILE LEU ASN ILE THR ALA CYS SER PRO SEQRES 3 A 459 GLU SER PHE THR SER PRO ASN GLU ALA GLY ILE PRO VAL SEQRES 4 A 459 VAL SER ASP TYR GLU ASP CYS ILE ARG ILE ASP VAL ASN SEQRES 5 A 459 GLN GLU THR ASN TYR VAL THR PHE SER PHE GLN GLY GLN SEQRES 6 A 459 LYS GLY VAL MET PRO ILE TRP ILE ILE ASP GLY LYS ASN SEQRES 7 A 459 TYR SER SER SER PHE ASN MET THR LYS TYR TYR ARG LYS SEQRES 8 A 459 ALA GLY ASP TYR SER VAL GLU VAL LYS ILE ALA ASN SER SEQRES 9 A 459 ASN GLY VAL SER ASP ARG ALA ILE THR ARG ASN PHE HIS SEQRES 10 A 459 ILE ASP LYS THR ILE MET THR GLY PHE GLY GLY PHE ASP SEQRES 11 A 459 PRO GLU SER ASN PHE ASN ILE TRP ARG THR ALA THR ILE SEQRES 12 A 459 SER GLU PRO THR PHE TRP TYR ALA PRO GLY TRP SER GLN SEQRES 13 A 459 ILE ALA ASP PRO ALA TYR SER LEU VAL ASN GLY THR TYR SEQRES 14 A 459 THR VAL THR LEU PRO GLU ALA THR SER GLU THR TRP GLN SEQRES 15 A 459 ALA GLN MET PRO ILE LYS THR ASN ILE ALA THR ASP ALA SEQRES 16 A 459 GLY LYS ASN TYR ASP PHE SER VAL ILE LEU THR SER THR SEQRES 17 A 459 ILE ASP HIS PRO ASN VAL THR VAL LYS LEU VAL ASP ALA SEQRES 18 A 459 THR GLU ASP LYS ILE TYR TYR PHE GLU GLY LYS THR PRO SEQRES 19 A 459 LEU VAL ALA ASN GLU PRO VAL CYS PHE TRP LYS SER ASN SEQRES 20 A 459 MET PRO GLY LEU ASP ILE ALA ASN LEU ASN LEU VAL PHE SEQRES 21 A 459 ASP PHE GLY GLY ASN ALA ALA GLY THR VAL MET THR ILE SEQRES 22 A 459 GLU SER ILE VAL LEU LYS ASP HIS ALA ASN ASP ASP GLY SEQRES 23 A 459 THR ILE VAL PRO GLU GLN GLU GLU THR PRO GLU PRO THR SEQRES 24 A 459 TRP SER ALA VAL ASP SER GLU ASP ASN LEU TRP HIS SER SEQRES 25 A 459 VAL THR PHE THR ASN GLU PHE TYR TYR ALA PRO GLY TRP SEQRES 26 A 459 ASN PRO ILE ALA ASN PRO ALA LEU ASN ILE ASP GLY ALA SEQRES 27 A 459 THR TYR THR LEU ASN PHE PRO THR ALA THR ASN GLU LYS SEQRES 28 A 459 TRP GLN ASN GLN VAL THR PHE ILE SER ASP ALA LEU THR SEQRES 29 A 459 ALA SER ALA GLU GLU ASN TYR ASP PHE ARG VAL ILE LEU SEQRES 30 A 459 ASN ALA SER ASN ASP ILE SER SER ALA THR ILE LYS LEU SEQRES 31 A 459 VAL GLN VAL GLY GLY GLY ASP ASN ASP ASN ILE PHE VAL SEQRES 32 A 459 PHE LEU LEU GLU ASP VAL LYS LEU THR ALA GLY GLU ASP SEQRES 33 A 459 VAL THR ALA LYS VAL ILE ASN ALA LYS GLY VAL ASP ILE SEQRES 34 A 459 THR GLN ALA LYS LEU VAL PHE ASP PHE GLY GLY ASN PRO SEQRES 35 A 459 ALA ASN THR GLU VAL ILE ILE LYS ASP ILE ILE LEU GLN SEQRES 36 A 459 LYS HIS LYS ASP SEQRES 1 B 459 MET LYS LYS ILE TYR LYS GLN ILE SER GLY ALA LEU LEU SEQRES 2 B 459 MET LEU THR LEU ILE LEU ASN ILE THR ALA CYS SER PRO SEQRES 3 B 459 GLU SER PHE THR SER PRO ASN GLU ALA GLY ILE PRO VAL SEQRES 4 B 459 VAL SER ASP TYR GLU ASP CYS ILE ARG ILE ASP VAL ASN SEQRES 5 B 459 GLN GLU THR ASN TYR VAL THR PHE SER PHE GLN GLY GLN SEQRES 6 B 459 LYS GLY VAL MET PRO ILE TRP ILE ILE ASP GLY LYS ASN SEQRES 7 B 459 TYR SER SER SER PHE ASN MET THR LYS TYR TYR ARG LYS SEQRES 8 B 459 ALA GLY ASP TYR SER VAL GLU VAL LYS ILE ALA ASN SER SEQRES 9 B 459 ASN GLY VAL SER ASP ARG ALA ILE THR ARG ASN PHE HIS SEQRES 10 B 459 ILE ASP LYS THR ILE MET THR GLY PHE GLY GLY PHE ASP SEQRES 11 B 459 PRO GLU SER ASN PHE ASN ILE TRP ARG THR ALA THR ILE SEQRES 12 B 459 SER GLU PRO THR PHE TRP TYR ALA PRO GLY TRP SER GLN SEQRES 13 B 459 ILE ALA ASP PRO ALA TYR SER LEU VAL ASN GLY THR TYR SEQRES 14 B 459 THR VAL THR LEU PRO GLU ALA THR SER GLU THR TRP GLN SEQRES 15 B 459 ALA GLN MET PRO ILE LYS THR ASN ILE ALA THR ASP ALA SEQRES 16 B 459 GLY LYS ASN TYR ASP PHE SER VAL ILE LEU THR SER THR SEQRES 17 B 459 ILE ASP HIS PRO ASN VAL THR VAL LYS LEU VAL ASP ALA SEQRES 18 B 459 THR GLU ASP LYS ILE TYR TYR PHE GLU GLY LYS THR PRO SEQRES 19 B 459 LEU VAL ALA ASN GLU PRO VAL CYS PHE TRP LYS SER ASN SEQRES 20 B 459 MET PRO GLY LEU ASP ILE ALA ASN LEU ASN LEU VAL PHE SEQRES 21 B 459 ASP PHE GLY GLY ASN ALA ALA GLY THR VAL MET THR ILE SEQRES 22 B 459 GLU SER ILE VAL LEU LYS ASP HIS ALA ASN ASP ASP GLY SEQRES 23 B 459 THR ILE VAL PRO GLU GLN GLU GLU THR PRO GLU PRO THR SEQRES 24 B 459 TRP SER ALA VAL ASP SER GLU ASP ASN LEU TRP HIS SER SEQRES 25 B 459 VAL THR PHE THR ASN GLU PHE TYR TYR ALA PRO GLY TRP SEQRES 26 B 459 ASN PRO ILE ALA ASN PRO ALA LEU ASN ILE ASP GLY ALA SEQRES 27 B 459 THR TYR THR LEU ASN PHE PRO THR ALA THR ASN GLU LYS SEQRES 28 B 459 TRP GLN ASN GLN VAL THR PHE ILE SER ASP ALA LEU THR SEQRES 29 B 459 ALA SER ALA GLU GLU ASN TYR ASP PHE ARG VAL ILE LEU SEQRES 30 B 459 ASN ALA SER ASN ASP ILE SER SER ALA THR ILE LYS LEU SEQRES 31 B 459 VAL GLN VAL GLY GLY GLY ASP ASN ASP ASN ILE PHE VAL SEQRES 32 B 459 PHE LEU LEU GLU ASP VAL LYS LEU THR ALA GLY GLU ASP SEQRES 33 B 459 VAL THR ALA LYS VAL ILE ASN ALA LYS GLY VAL ASP ILE SEQRES 34 B 459 THR GLN ALA LYS LEU VAL PHE ASP PHE GLY GLY ASN PRO SEQRES 35 B 459 ALA ASN THR GLU VAL ILE ILE LYS ASP ILE ILE LEU GLN SEQRES 36 B 459 LYS HIS LYS ASP FORMUL 3 HOH *87(H2 O) HELIX 1 AA1 VAL A 39 TYR A 43 5 5 HELIX 2 AA2 ASN A 136 ALA A 141 1 6 HELIX 3 AA3 PRO A 152 SER A 155 5 4 HELIX 4 AA4 SER A 305 LEU A 309 5 5 HELIX 5 AA5 PRO A 323 ASN A 326 5 4 HELIX 6 AA6 GLY A 395 ASN A 400 5 6 HELIX 7 AA7 ASN B 136 THR B 140 5 5 HELIX 8 AA8 PRO B 152 SER B 155 5 4 HELIX 9 AA9 SER B 305 LEU B 309 5 5 HELIX 10 AB1 PRO B 323 ASN B 326 5 4 HELIX 11 AB2 GLY B 395 ASN B 400 5 6 SHEET 1 AA1 3 ILE A 47 ASN A 52 0 SHEET 2 AA1 3 TYR A 57 PHE A 62 -1 O THR A 59 N ASP A 50 SHEET 3 AA1 3 ASN A 84 TYR A 88 -1 O MET A 85 N PHE A 60 SHEET 1 AA2 3 MET A 69 ILE A 74 0 SHEET 2 AA2 3 GLY A 93 ALA A 102 -1 O GLU A 98 N ILE A 73 SHEET 3 AA2 3 ILE A 112 ILE A 118 -1 O PHE A 116 N TYR A 95 SHEET 1 AA3 5 TRP A 149 TYR A 150 0 SHEET 2 AA3 5 ALA A 183 LYS A 188 -1 O GLN A 184 N TRP A 149 SHEET 3 AA3 5 LEU A 256 ASP A 261 -1 O PHE A 260 N MET A 185 SHEET 4 AA3 5 HIS A 211 ASP A 220 -1 N VAL A 219 O ASN A 257 SHEET 5 AA3 5 GLU A 223 LEU A 235 -1 O ILE A 226 N ASP A 220 SHEET 1 AA4 5 TYR A 162 VAL A 165 0 SHEET 2 AA4 5 THR A 168 LEU A 173 -1 O THR A 168 N VAL A 165 SHEET 3 AA4 5 THR A 269 ASP A 280 -1 O MET A 271 N VAL A 171 SHEET 4 AA4 5 ASN A 198 SER A 207 -1 N SER A 202 O VAL A 277 SHEET 5 AA4 5 VAL A 241 PRO A 249 -1 O VAL A 241 N LEU A 205 SHEET 1 AA5 5 THR A 316 TYR A 321 0 SHEET 2 AA5 5 ASN A 354 ILE A 359 -1 O GLN A 355 N TYR A 320 SHEET 3 AA5 5 ALA A 432 GLY A 439 -1 O LEU A 434 N PHE A 358 SHEET 4 AA5 5 ILE A 383 GLN A 392 -1 N LYS A 389 O VAL A 435 SHEET 5 AA5 5 PHE A 402 LEU A 411 -1 O LEU A 406 N ILE A 388 SHEET 1 AA6 5 ALA A 332 ASP A 336 0 SHEET 2 AA6 5 THR A 339 PHE A 344 -1 O THR A 339 N ASP A 336 SHEET 3 AA6 5 THR A 445 LYS A 456 -1 O ILE A 449 N TYR A 340 SHEET 4 AA6 5 ASN A 370 ALA A 379 -1 N ASN A 378 O ILE A 448 SHEET 5 AA6 5 VAL A 417 LYS A 425 -1 O ALA A 419 N VAL A 375 SHEET 1 AA7 3 ASP B 50 ASN B 52 0 SHEET 2 AA7 3 TYR B 57 PHE B 60 -1 O THR B 59 N ASP B 50 SHEET 3 AA7 3 MET B 85 TYR B 88 -1 O MET B 85 N PHE B 60 SHEET 1 AA8 3 ILE B 73 ILE B 74 0 SHEET 2 AA8 3 GLY B 93 GLU B 98 -1 O GLU B 98 N ILE B 73 SHEET 3 AA8 3 ARG B 114 ILE B 118 -1 O ILE B 118 N GLY B 93 SHEET 1 AA9 5 TRP B 149 TYR B 150 0 SHEET 2 AA9 5 ALA B 183 LYS B 188 -1 O GLN B 184 N TRP B 149 SHEET 3 AA9 5 LEU B 256 ASP B 261 -1 O PHE B 260 N MET B 185 SHEET 4 AA9 5 HIS B 211 ASP B 220 -1 N LYS B 217 O VAL B 259 SHEET 5 AA9 5 GLU B 223 GLU B 230 -1 O ILE B 226 N ASP B 220 SHEET 1 AB1 5 TRP B 149 TYR B 150 0 SHEET 2 AB1 5 ALA B 183 LYS B 188 -1 O GLN B 184 N TRP B 149 SHEET 3 AB1 5 LEU B 256 ASP B 261 -1 O PHE B 260 N MET B 185 SHEET 4 AB1 5 HIS B 211 ASP B 220 -1 N LYS B 217 O VAL B 259 SHEET 5 AB1 5 THR B 233 LEU B 235 -1 O LEU B 235 N HIS B 211 SHEET 1 AB2 5 ALA B 161 VAL B 165 0 SHEET 2 AB2 5 THR B 168 LEU B 173 -1 O THR B 168 N VAL B 165 SHEET 3 AB2 5 THR B 269 ASP B 280 -1 O MET B 271 N VAL B 171 SHEET 4 AB2 5 ASN B 198 SER B 207 -1 N ASP B 200 O LYS B 279 SHEET 5 AB2 5 VAL B 241 PRO B 249 -1 O VAL B 241 N LEU B 205 SHEET 1 AB3 5 PHE B 315 TYR B 321 0 SHEET 2 AB3 5 ASN B 354 SER B 360 -1 O THR B 357 N GLU B 318 SHEET 3 AB3 5 ALA B 432 ASP B 437 -1 O LEU B 434 N PHE B 358 SHEET 4 AB3 5 ILE B 383 GLN B 392 -1 N VAL B 391 O LYS B 433 SHEET 5 AB3 5 PHE B 402 LEU B 411 -1 O LEU B 406 N ILE B 388 SHEET 1 AB4 5 ALA B 332 ILE B 335 0 SHEET 2 AB4 5 THR B 339 PHE B 344 -1 O THR B 341 N ASN B 334 SHEET 3 AB4 5 THR B 445 LYS B 456 -1 O ILE B 449 N TYR B 340 SHEET 4 AB4 5 ASN B 370 ALA B 379 -1 N ASP B 372 O GLN B 455 SHEET 5 AB4 5 VAL B 417 LYS B 425 -1 O VAL B 417 N LEU B 377 CRYST1 174.101 182.141 92.295 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010835 0.00000