HEADER PROTEIN BINDING 03-DEC-20 7KXI TITLE STRUCTURE OF XL5-LIGATED HRPN13 PRU DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN,GP110,ADHESION-REGULATING COMPND 5 MOLECULE 1,ARM-1,PROTEASOME REGULATORY PARTICLE NON-ATPASE 13,HRPN13, COMPND 6 RPN13 HOMOLOG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADRM1, GP110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.LU,K.J.WALTERS REVDAT 2 29-DEC-21 7KXI 1 JRNL REVDAT 1 15-DEC-21 7KXI 0 JRNL AUTH X.LU,V.R.SABBASANI,V.OSEI-AMPONSA,C.N.EVANS,J.C.KING, JRNL AUTH 2 S.G.TARASOV,M.DYBA,S.DAS,K.C.CHAN,C.D.SCHWIETERS, JRNL AUTH 3 S.CHOUDHARI,C.FROMONT,Y.ZHAO,B.TRAN,X.CHEN,H.MATSUO, JRNL AUTH 4 T.ANDRESSON,R.CHARI,R.E.SWENSON,N.I.TARASOVA,K.J.WALTERS JRNL TITL STRUCTURE-GUIDED BIFUNCTIONAL MOLECULES HIT A DEUBAD-LACKING JRNL TITL 2 HRPN13 SPECIES UPREGULATED IN MULTIPLE MYELOMA. JRNL REF NAT COMMUN V. 12 7318 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34916494 JRNL DOI 10.1038/S41467-021-27570-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253324. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.11 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-13C] 13C_PROTEIN, 0.48 REMARK 210 MM LIGAND, 20% H2O/70% D2O/10% REMARK 210 DMSO; 0.25 MM [U-13C] 13C_ REMARK 210 PROTEIN, 0.5 MM LIGAND, 90% H2O/ REMARK 210 10% DMSO; 0.5 MM PROTEIN, 0.5 MM REMARK 210 [U-13C] LIGAND, 90% H2O/10% DMSO; REMARK 210 0.4 MM PROTEIN, 0.4 MM [U-13C] REMARK 210 LIGAND, 20% H2O/70% D2O/10% DMSO; REMARK 210 0.25 MM [U-15N] PROTEIN, 0.5 MM REMARK 210 LIGAND, 90% H2O/10% DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C HALF-FILTERED REMARK 210 NOESY; 2D 1H-13C HALF-FILTERED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, NMRPIPE, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 131 REMARK 465 PRO A 132 REMARK 465 MET A 133 REMARK 465 PRO A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 LEU A 137 REMARK 465 GLY A 138 REMARK 465 ALA A 139 REMARK 465 SER A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 HIS A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 ALA A 149 REMARK 465 LEU A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 14 SER A 102 19.98 58.89 REMARK 500 15 ASP A 78 -0.69 66.15 REMARK 500 17 SER A 55 -0.78 76.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30824 RELATED DB: BMRB REMARK 900 PROTEIN COMPLEX DBREF 7KXI A 1 150 UNP Q16186 ADRM1_HUMAN 1 150 SEQADV 7KXI GLY A -3 UNP Q16186 EXPRESSION TAG SEQADV 7KXI PRO A -2 UNP Q16186 EXPRESSION TAG SEQADV 7KXI GLY A -1 UNP Q16186 EXPRESSION TAG SEQADV 7KXI SER A 0 UNP Q16186 EXPRESSION TAG SEQRES 1 A 154 GLY PRO GLY SER MET THR THR SER GLY ALA LEU PHE PRO SEQRES 2 A 154 SER LEU VAL PRO GLY SER ARG GLY ALA SER ASN LYS TYR SEQRES 3 A 154 LEU VAL GLU PHE ARG ALA GLY LYS MET SER LEU LYS GLY SEQRES 4 A 154 THR THR VAL THR PRO ASP LYS ARG LYS GLY LEU VAL TYR SEQRES 5 A 154 ILE GLN GLN THR ASP ASP SER LEU ILE HIS PHE CYS TRP SEQRES 6 A 154 LYS ASP ARG THR SER GLY ASN VAL GLU ASP ASP LEU ILE SEQRES 7 A 154 ILE PHE PRO ASP ASP CYS GLU PHE LYS ARG VAL PRO GLN SEQRES 8 A 154 CYS PRO SER GLY ARG VAL TYR VAL LEU LYS PHE LYS ALA SEQRES 9 A 154 GLY SER LYS ARG LEU PHE PHE TRP MET GLN GLU PRO LYS SEQRES 10 A 154 THR ASP GLN ASP GLU GLU HIS CYS ARG LYS VAL ASN GLU SEQRES 11 A 154 TYR LEU ASN ASN PRO PRO MET PRO GLY ALA LEU GLY ALA SEQRES 12 A 154 SER GLY SER SER GLY HIS GLU LEU SER ALA LEU HET XAY A 201 51 HETNAM XAY 2-{[(2S)-2-CYANO-3-{3-[(4-METHYLBENZENE-1-CARBONYL) HETNAM 2 XAY AMINO]PHENYL}PROPANOYL]AMINO}BENZOIC ACID FORMUL 2 XAY C25 H21 N3 O4 HELIX 1 AA1 GLN A 116 ASN A 130 1 15 SHEET 1 AA1 5 THR A 37 PRO A 40 0 SHEET 2 AA1 5 VAL A 24 LYS A 34 -1 N LYS A 34 O THR A 37 SHEET 3 AA1 5 GLY A 45 GLN A 51 -1 O VAL A 47 N PHE A 26 SHEET 4 AA1 5 ILE A 57 ASP A 63 -1 O LYS A 62 N LEU A 46 SHEET 5 AA1 5 VAL A 69 ILE A 75 -1 O ILE A 75 N ILE A 57 SHEET 1 AA2 5 THR A 37 PRO A 40 0 SHEET 2 AA2 5 VAL A 24 LYS A 34 -1 N LYS A 34 O THR A 37 SHEET 3 AA2 5 ARG A 104 MET A 109 -1 O TRP A 108 N GLY A 29 SHEET 4 AA2 5 VAL A 93 PHE A 98 -1 N TYR A 94 O PHE A 107 SHEET 5 AA2 5 CYS A 80 ARG A 84 -1 N LYS A 83 O VAL A 95 LINK SG CYS A 88 C15 XAY A 201 1555 1555 1.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1