HEADER GENE REGULATION 04-DEC-20 7KXT TITLE CRYSTAL STRUCTURE OF HUMAN EED COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEED,EMBRYONIC ECTODERM DEVELOPMENT PROTEIN,WD PROTEIN COMPND 5 ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS 1,WAIT-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28GST-LIC KEYWDS EED, WD40, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHU,A.DONG,D.DU,Y.LIU,C.LUO,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 18-OCT-23 7KXT 1 REMARK REVDAT 2 04-AUG-21 7KXT 1 JRNL REVDAT 1 24-FEB-21 7KXT 0 JRNL AUTH D.DU,D.XU,L.ZHU,G.STAZI,C.ZWERGEL,Y.LIU,Z.LUO,Y.LI,Y.ZHANG, JRNL AUTH 2 K.ZHU,Y.DING,J.LIU,S.FAN,K.ZHAO,N.ZHANG,X.KONG,H.JIANG, JRNL AUTH 3 K.CHEN,K.ZHAO,S.VALENTE,J.MIN,W.DUAN,C.LUO JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF SMALL-MOLECULE PRC2 JRNL TITL 2 INHIBITORS TARGETING EZH2-EED INTERACTION. JRNL REF J.MED.CHEM. V. 64 8194 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34077206 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02261 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3900 - 5.2987 0.99 2946 142 0.1900 0.2129 REMARK 3 2 5.2987 - 4.2072 0.99 2891 137 0.1324 0.1480 REMARK 3 3 4.2072 - 3.6757 0.99 2834 139 0.1429 0.1775 REMARK 3 4 3.6757 - 3.3398 0.99 2861 134 0.1594 0.1877 REMARK 3 5 3.3398 - 3.1006 0.98 2765 157 0.1652 0.2168 REMARK 3 6 3.1006 - 2.9178 0.98 2812 127 0.1796 0.2217 REMARK 3 7 2.9178 - 2.7717 0.99 2819 147 0.1840 0.2187 REMARK 3 8 2.7717 - 2.6511 0.99 2842 128 0.2115 0.2813 REMARK 3 9 2.6511 - 2.5490 0.99 2828 152 0.2071 0.2654 REMARK 3 10 2.5490 - 2.4611 0.97 2717 161 0.2138 0.2762 REMARK 3 11 2.4611 - 2.3842 0.99 2779 148 0.2249 0.2789 REMARK 3 12 2.3842 - 2.3160 0.99 2854 136 0.2345 0.2649 REMARK 3 13 2.3160 - 2.2550 1.00 2776 163 0.2386 0.2734 REMARK 3 14 2.2550 - 2.2000 0.99 2806 148 0.2452 0.2978 REMARK 3 15 2.2000 - 2.1500 0.94 2639 146 0.2797 0.3236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6029 REMARK 3 ANGLE : 0.932 8212 REMARK 3 CHIRALITY : 0.060 890 REMARK 3 PLANARITY : 0.006 1052 REMARK 3 DIHEDRAL : 13.791 3571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 77:441 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.414 -5.764 -44.189 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.2531 REMARK 3 T33: 0.2285 T12: -0.0257 REMARK 3 T13: -0.0096 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.9789 L22: 1.4364 REMARK 3 L33: 1.4181 L12: 0.0125 REMARK 3 L13: 0.3985 L23: 0.2737 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.1377 S13: 0.0719 REMARK 3 S21: 0.0341 S22: -0.0074 S23: -0.2835 REMARK 3 S31: -0.0493 S32: 0.3708 S33: 0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 80:440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.332 -15.429 2.952 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.2046 REMARK 3 T33: 0.2024 T12: -0.0112 REMARK 3 T13: -0.0102 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.3465 L22: 1.4050 REMARK 3 L33: 0.9438 L12: -0.5190 REMARK 3 L13: -0.2658 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.1810 S13: 0.0346 REMARK 3 S21: 0.0783 S22: -0.0090 S23: -0.2256 REMARK 3 S31: -0.0078 S32: 0.2050 S33: 0.0192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 80 THROUGH 81 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 82 OR (RESID 83 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 84 THROUGH REMARK 3 105 OR RESID 108 THROUGH 274 OR (RESID REMARK 3 275 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 276 THROUGH REMARK 3 282 OR (RESID 283 THROUGH 287 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 288 THROUGH 305 OR (RESID 306 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 307 THROUGH 324 OR (RESID 325 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD )) OR RESID REMARK 3 326 THROUGH 341 OR (RESID 342 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD )) OR RESID 343 REMARK 3 THROUGH 354 OR RESID 356 THROUGH 368 OR REMARK 3 RESID 370 THROUGH 391 OR RESID 402 REMARK 3 THROUGH 438 OR (RESID 439 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR (RESID 440 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )))) REMARK 3 SELECTION : (CHAIN B AND ((RESID 80 THROUGH 81 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 82 THROUGH 158 OR REMARK 3 (RESID 159 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 160 REMARK 3 THROUGH 177 OR (RESID 178 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 179 THROUGH 200 OR (RESID 201 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 202 THROUGH 334 OR (RESID 335 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME CE ) REMARK 3 ) OR RESID 336 THROUGH 343 OR (RESID 344 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 345 THROUGH 354 REMARK 3 OR RESID 356 THROUGH 368 OR RESID 370 REMARK 3 THROUGH 374 OR (RESID 375 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR RESID 376 REMARK 3 THROUGH 391 OR RESID 402 THROUGH 440)) REMARK 3 ATOM PAIRS NUMBER : 3222 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.392 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3JZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 0.1M TRISCL REMARK 280 PH8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.97000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 42 REMARK 465 SER A 43 REMARK 465 ILE A 44 REMARK 465 GLU A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 THR A 48 REMARK 465 ASN A 49 REMARK 465 THR A 50 REMARK 465 GLU A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 THR A 55 REMARK 465 PRO A 56 REMARK 465 THR A 57 REMARK 465 ASN A 58 REMARK 465 THR A 59 REMARK 465 PRO A 60 REMARK 465 ASN A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 LYS A 66 REMARK 465 SER A 67 REMARK 465 TRP A 68 REMARK 465 GLY A 69 REMARK 465 LYS A 70 REMARK 465 GLY A 71 REMARK 465 LYS A 72 REMARK 465 TRP A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 ASP B 40 REMARK 465 ALA B 41 REMARK 465 VAL B 42 REMARK 465 SER B 43 REMARK 465 ILE B 44 REMARK 465 GLU B 45 REMARK 465 SER B 46 REMARK 465 GLY B 47 REMARK 465 THR B 48 REMARK 465 ASN B 49 REMARK 465 THR B 50 REMARK 465 GLU B 51 REMARK 465 ARG B 52 REMARK 465 PRO B 53 REMARK 465 ASP B 54 REMARK 465 THR B 55 REMARK 465 PRO B 56 REMARK 465 THR B 57 REMARK 465 ASN B 58 REMARK 465 THR B 59 REMARK 465 PRO B 60 REMARK 465 ASN B 61 REMARK 465 ALA B 62 REMARK 465 PRO B 63 REMARK 465 GLY B 64 REMARK 465 ARG B 65 REMARK 465 LYS B 66 REMARK 465 SER B 67 REMARK 465 TRP B 68 REMARK 465 GLY B 69 REMARK 465 LYS B 70 REMARK 465 GLY B 71 REMARK 465 LYS B 72 REMARK 465 TRP B 73 REMARK 465 LYS B 74 REMARK 465 SER B 75 REMARK 465 LYS B 76 REMARK 465 LYS B 77 REMARK 465 CYS B 78 REMARK 465 LYS B 79 REMARK 465 LYS B 106 REMARK 465 GLU B 107 REMARK 465 ARG B 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 SER A 81 OG REMARK 470 LYS A 83 NZ REMARK 470 LYS A 89 NZ REMARK 470 ASP A 91 OD1 OD2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 SER A 128 OG REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 SER A 159 OG REMARK 470 ILE A 178 CG1 CG2 CD1 REMARK 470 ARG A 201 NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 275 CE NZ REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 ASN A 283 OD1 ND2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 335 NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 LYS A 375 CE NZ REMARK 470 LYS A 385 CD CE NZ REMARK 470 VAL A 393 CG1 CG2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 ASP A 395 CG OD1 OD2 REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 83 CD CE NZ REMARK 470 LYS B 89 NZ REMARK 470 ASP B 91 OD1 OD2 REMARK 470 ASP B 109 CG OD1 OD2 REMARK 470 SER B 128 OG REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 ASN B 157 CG OD1 ND2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ASN B 281 CG OD1 ND2 REMARK 470 ASN B 283 CG OD1 ND2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 THR B 285 OG1 CG2 REMARK 470 ASN B 286 CG OD1 ND2 REMARK 470 ARG B 287 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 306 NE CZ NH1 NH2 REMARK 470 GLU B 325 OE1 OE2 REMARK 470 LYS B 342 CE NZ REMARK 470 LYS B 344 CD CE NZ REMARK 470 LYS B 385 CD CE NZ REMARK 470 GLU B 394 CG CD OE1 OE2 REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 ARG B 439 NE CZ NH1 NH2 REMARK 470 LEU B 440 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 17.63 59.87 REMARK 500 GLU A 107 73.80 -66.45 REMARK 500 SER A 118 -141.69 52.72 REMARK 500 ASN A 119 32.93 -97.92 REMARK 500 LEU A 135 -63.13 -96.46 REMARK 500 HIS A 213 10.22 84.29 REMARK 500 ASN A 283 30.87 -75.77 REMARK 500 PHE A 299 145.22 -171.29 REMARK 500 SER A 323 -153.60 -112.88 REMARK 500 TYR A 365 60.31 74.04 REMARK 500 SER B 118 -140.65 51.75 REMARK 500 ASN B 119 32.77 -97.28 REMARK 500 LEU B 135 -60.44 -96.40 REMARK 500 HIS B 213 8.53 84.25 REMARK 500 HIS B 258 -0.94 73.95 REMARK 500 ASN B 283 30.49 -74.90 REMARK 500 PHE B 299 145.06 -171.20 REMARK 500 SER B 323 -154.91 -111.58 REMARK 500 TYR B 365 61.71 71.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XB7 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XB7 B 501 DBREF 7KXT A 40 441 UNP O75530 EED_HUMAN 40 441 DBREF 7KXT B 40 441 UNP O75530 EED_HUMAN 40 441 SEQRES 1 A 402 ASP ALA VAL SER ILE GLU SER GLY THR ASN THR GLU ARG SEQRES 2 A 402 PRO ASP THR PRO THR ASN THR PRO ASN ALA PRO GLY ARG SEQRES 3 A 402 LYS SER TRP GLY LYS GLY LYS TRP LYS SER LYS LYS CYS SEQRES 4 A 402 LYS TYR SER PHE LYS CYS VAL ASN SER LEU LYS GLU ASP SEQRES 5 A 402 HIS ASN GLN PRO LEU PHE GLY VAL GLN PHE ASN TRP HIS SEQRES 6 A 402 SER LYS GLU GLY ASP PRO LEU VAL PHE ALA THR VAL GLY SEQRES 7 A 402 SER ASN ARG VAL THR LEU TYR GLU CYS HIS SER GLN GLY SEQRES 8 A 402 GLU ILE ARG LEU LEU GLN SER TYR VAL ASP ALA ASP ALA SEQRES 9 A 402 ASP GLU ASN PHE TYR THR CYS ALA TRP THR TYR ASP SER SEQRES 10 A 402 ASN THR SER HIS PRO LEU LEU ALA VAL ALA GLY SER ARG SEQRES 11 A 402 GLY ILE ILE ARG ILE ILE ASN PRO ILE THR MET GLN CYS SEQRES 12 A 402 ILE LYS HIS TYR VAL GLY HIS GLY ASN ALA ILE ASN GLU SEQRES 13 A 402 LEU LYS PHE HIS PRO ARG ASP PRO ASN LEU LEU LEU SER SEQRES 14 A 402 VAL SER LYS ASP HIS ALA LEU ARG LEU TRP ASN ILE GLN SEQRES 15 A 402 THR ASP THR LEU VAL ALA ILE PHE GLY GLY VAL GLU GLY SEQRES 16 A 402 HIS ARG ASP GLU VAL LEU SER ALA ASP TYR ASP LEU LEU SEQRES 17 A 402 GLY GLU LYS ILE MET SER CYS GLY MET ASP HIS SER LEU SEQRES 18 A 402 LYS LEU TRP ARG ILE ASN SER LYS ARG MET MET ASN ALA SEQRES 19 A 402 ILE LYS GLU SER TYR ASP TYR ASN PRO ASN LYS THR ASN SEQRES 20 A 402 ARG PRO PHE ILE SER GLN LYS ILE HIS PHE PRO ASP PHE SEQRES 21 A 402 SER THR ARG ASP ILE HIS ARG ASN TYR VAL ASP CYS VAL SEQRES 22 A 402 ARG TRP LEU GLY ASP LEU ILE LEU SER LYS SER CYS GLU SEQRES 23 A 402 ASN ALA ILE VAL CYS TRP LYS PRO GLY LYS MET GLU ASP SEQRES 24 A 402 ASP ILE ASP LYS ILE LYS PRO SER GLU SER ASN VAL THR SEQRES 25 A 402 ILE LEU GLY ARG PHE ASP TYR SER GLN CYS ASP ILE TRP SEQRES 26 A 402 TYR MET ARG PHE SER MET ASP PHE TRP GLN LYS MET LEU SEQRES 27 A 402 ALA LEU GLY ASN GLN VAL GLY LYS LEU TYR VAL TRP ASP SEQRES 28 A 402 LEU GLU VAL GLU ASP PRO HIS LYS ALA LYS CYS THR THR SEQRES 29 A 402 LEU THR HIS HIS LYS CYS GLY ALA ALA ILE ARG GLN THR SEQRES 30 A 402 SER PHE SER ARG ASP SER SER ILE LEU ILE ALA VAL CYS SEQRES 31 A 402 ASP ASP ALA SER ILE TRP ARG TRP ASP ARG LEU ARG SEQRES 1 B 402 ASP ALA VAL SER ILE GLU SER GLY THR ASN THR GLU ARG SEQRES 2 B 402 PRO ASP THR PRO THR ASN THR PRO ASN ALA PRO GLY ARG SEQRES 3 B 402 LYS SER TRP GLY LYS GLY LYS TRP LYS SER LYS LYS CYS SEQRES 4 B 402 LYS TYR SER PHE LYS CYS VAL ASN SER LEU LYS GLU ASP SEQRES 5 B 402 HIS ASN GLN PRO LEU PHE GLY VAL GLN PHE ASN TRP HIS SEQRES 6 B 402 SER LYS GLU GLY ASP PRO LEU VAL PHE ALA THR VAL GLY SEQRES 7 B 402 SER ASN ARG VAL THR LEU TYR GLU CYS HIS SER GLN GLY SEQRES 8 B 402 GLU ILE ARG LEU LEU GLN SER TYR VAL ASP ALA ASP ALA SEQRES 9 B 402 ASP GLU ASN PHE TYR THR CYS ALA TRP THR TYR ASP SER SEQRES 10 B 402 ASN THR SER HIS PRO LEU LEU ALA VAL ALA GLY SER ARG SEQRES 11 B 402 GLY ILE ILE ARG ILE ILE ASN PRO ILE THR MET GLN CYS SEQRES 12 B 402 ILE LYS HIS TYR VAL GLY HIS GLY ASN ALA ILE ASN GLU SEQRES 13 B 402 LEU LYS PHE HIS PRO ARG ASP PRO ASN LEU LEU LEU SER SEQRES 14 B 402 VAL SER LYS ASP HIS ALA LEU ARG LEU TRP ASN ILE GLN SEQRES 15 B 402 THR ASP THR LEU VAL ALA ILE PHE GLY GLY VAL GLU GLY SEQRES 16 B 402 HIS ARG ASP GLU VAL LEU SER ALA ASP TYR ASP LEU LEU SEQRES 17 B 402 GLY GLU LYS ILE MET SER CYS GLY MET ASP HIS SER LEU SEQRES 18 B 402 LYS LEU TRP ARG ILE ASN SER LYS ARG MET MET ASN ALA SEQRES 19 B 402 ILE LYS GLU SER TYR ASP TYR ASN PRO ASN LYS THR ASN SEQRES 20 B 402 ARG PRO PHE ILE SER GLN LYS ILE HIS PHE PRO ASP PHE SEQRES 21 B 402 SER THR ARG ASP ILE HIS ARG ASN TYR VAL ASP CYS VAL SEQRES 22 B 402 ARG TRP LEU GLY ASP LEU ILE LEU SER LYS SER CYS GLU SEQRES 23 B 402 ASN ALA ILE VAL CYS TRP LYS PRO GLY LYS MET GLU ASP SEQRES 24 B 402 ASP ILE ASP LYS ILE LYS PRO SER GLU SER ASN VAL THR SEQRES 25 B 402 ILE LEU GLY ARG PHE ASP TYR SER GLN CYS ASP ILE TRP SEQRES 26 B 402 TYR MET ARG PHE SER MET ASP PHE TRP GLN LYS MET LEU SEQRES 27 B 402 ALA LEU GLY ASN GLN VAL GLY LYS LEU TYR VAL TRP ASP SEQRES 28 B 402 LEU GLU VAL GLU ASP PRO HIS LYS ALA LYS CYS THR THR SEQRES 29 B 402 LEU THR HIS HIS LYS CYS GLY ALA ALA ILE ARG GLN THR SEQRES 30 B 402 SER PHE SER ARG ASP SER SER ILE LEU ILE ALA VAL CYS SEQRES 31 B 402 ASP ASP ALA SER ILE TRP ARG TRP ASP ARG LEU ARG HET XB7 A 501 34 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX A 516 1 HET UNX A 517 1 HET UNX A 518 1 HET UNX A 519 1 HET UNX A 520 1 HET UNX A 521 1 HET UNX A 522 1 HET UNX A 523 1 HET UNX A 524 1 HET UNX A 525 1 HET UNX A 526 1 HET UNX A 527 1 HET UNX A 528 1 HET XB7 B 501 34 HET UNX B 502 1 HET UNX B 503 1 HET UNX B 504 1 HET UNX B 505 1 HET UNX B 506 1 HET UNX B 507 1 HET UNX B 508 1 HET UNX B 509 1 HET UNX B 510 1 HET UNX B 511 1 HET UNX B 512 1 HET UNX B 513 1 HET UNX B 514 1 HET UNX B 515 1 HET UNX B 516 1 HET UNX B 517 1 HET UNX B 518 1 HET UNX B 519 1 HET UNX B 520 1 HET UNX B 521 1 HET UNX B 522 1 HET UNX B 523 1 HET UNX B 524 1 HET UNX B 525 1 HET UNX B 526 1 HETNAM XB7 1-[(4-FLUOROPHENYL)METHYL]-N-{1-[2-(4-METHOXYPHENYL) HETNAM 2 XB7 ETHYL]PIPERIDIN-4-YL}-1H-BENZIMIDAZOL-2-AMINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 XB7 2(C28 H31 F N4 O) FORMUL 4 UNX 52(X) FORMUL 57 HOH *98(H2 O) HELIX 1 AA1 SER A 128 GLY A 130 5 3 HELIX 2 AA2 SER A 267 TYR A 280 1 14 HELIX 3 AA3 ASN A 281 THR A 285 5 5 HELIX 4 AA4 ASP A 339 ILE A 343 5 5 HELIX 5 AA5 ASP A 395 ALA A 399 5 5 HELIX 6 AA6 SER B 128 GLY B 130 5 3 HELIX 7 AA7 SER B 267 TYR B 280 1 14 HELIX 8 AA8 ASN B 281 THR B 285 5 5 HELIX 9 AA9 ASP B 339 ILE B 343 5 5 HELIX 10 AB1 ASP B 395 ALA B 399 5 5 SHEET 1 AA1 4 PHE A 82 LYS A 89 0 SHEET 2 AA1 4 SER A 433 ARG A 439 -1 O ILE A 434 N LEU A 88 SHEET 3 AA1 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 AA1 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 AA2 4 LEU A 96 PHE A 101 0 SHEET 2 AA2 4 LEU A 111 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 AA2 4 ARG A 120 CYS A 126 -1 O TYR A 124 N PHE A 113 SHEET 4 AA2 4 ILE A 132 VAL A 139 -1 O ARG A 133 N GLU A 125 SHEET 1 AA3 4 PHE A 147 TYR A 154 0 SHEET 2 AA3 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 AA3 4 ILE A 172 ASN A 176 -1 O ILE A 175 N LEU A 163 SHEET 4 AA3 4 GLN A 181 TYR A 186 -1 O ILE A 183 N ILE A 174 SHEET 1 AA4 5 ILE A 193 PHE A 198 0 SHEET 2 AA4 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 AA4 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 AA4 5 THR A 224 PHE A 229 -1 O THR A 224 N ASN A 219 SHEET 5 AA4 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 AA5 4 VAL A 239 TYR A 244 0 SHEET 2 AA5 4 LYS A 250 GLY A 255 -1 O CYS A 254 N SER A 241 SHEET 3 AA5 4 LEU A 260 ARG A 264 -1 O TRP A 263 N ILE A 251 SHEET 4 AA5 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 AA6 4 CYS A 311 LEU A 315 0 SHEET 2 AA6 4 LEU A 318 LYS A 322 -1 O LEU A 318 N LEU A 315 SHEET 3 AA6 4 ALA A 327 PRO A 333 -1 O VAL A 329 N SER A 321 SHEET 4 AA6 4 VAL A 350 ASP A 357 -1 O THR A 351 N LYS A 332 SHEET 1 AA7 4 PHE A 368 MET A 370 0 SHEET 2 AA7 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 AA7 4 LEU A 386 ASP A 390 -1 O TYR A 387 N LEU A 379 SHEET 4 AA7 4 THR A 402 LEU A 404 -1 O THR A 402 N VAL A 388 SHEET 1 AA8 4 PHE B 82 LYS B 89 0 SHEET 2 AA8 4 SER B 433 ARG B 439 -1 O ILE B 434 N LEU B 88 SHEET 3 AA8 4 ILE B 424 CYS B 429 -1 N ALA B 427 O TRP B 435 SHEET 4 AA8 4 ILE B 413 PHE B 418 -1 N SER B 417 O ILE B 426 SHEET 1 AA9 4 GLY B 98 PHE B 101 0 SHEET 2 AA9 4 VAL B 112 GLY B 117 -1 O ALA B 114 N GLN B 100 SHEET 3 AA9 4 ARG B 120 CYS B 126 -1 O TYR B 124 N PHE B 113 SHEET 4 AA9 4 ILE B 132 VAL B 139 -1 O ARG B 133 N GLU B 125 SHEET 1 AB1 4 PHE B 147 TYR B 154 0 SHEET 2 AB1 4 PRO B 161 GLY B 167 -1 O LEU B 162 N THR B 153 SHEET 3 AB1 4 ILE B 172 ASN B 176 -1 O ILE B 175 N LEU B 163 SHEET 4 AB1 4 GLN B 181 TYR B 186 -1 O ILE B 183 N ILE B 174 SHEET 1 AB2 5 ILE B 193 PHE B 198 0 SHEET 2 AB2 5 LEU B 205 SER B 210 -1 O LEU B 207 N LYS B 197 SHEET 3 AB2 5 LEU B 215 ASN B 219 -1 O TRP B 218 N LEU B 206 SHEET 4 AB2 5 THR B 224 PHE B 229 -1 O PHE B 229 N LEU B 215 SHEET 5 AB2 5 GLN B 292 ILE B 294 1 O ILE B 294 N ILE B 228 SHEET 1 AB3 4 VAL B 239 TYR B 244 0 SHEET 2 AB3 4 LYS B 250 GLY B 255 -1 O CYS B 254 N SER B 241 SHEET 3 AB3 4 LEU B 260 ARG B 264 -1 O TRP B 263 N ILE B 251 SHEET 4 AB3 4 PHE B 299 THR B 301 -1 O PHE B 299 N LEU B 262 SHEET 1 AB4 4 CYS B 311 LEU B 315 0 SHEET 2 AB4 4 LEU B 318 LYS B 322 -1 O LEU B 318 N LEU B 315 SHEET 3 AB4 4 ALA B 327 PRO B 333 -1 O VAL B 329 N SER B 321 SHEET 4 AB4 4 VAL B 350 ASP B 357 -1 O GLY B 354 N CYS B 330 SHEET 1 AB5 4 PHE B 368 MET B 370 0 SHEET 2 AB5 4 MET B 376 GLY B 380 -1 O ALA B 378 N SER B 369 SHEET 3 AB5 4 LEU B 386 ASP B 390 -1 O TYR B 387 N LEU B 379 SHEET 4 AB5 4 CYS B 401 LEU B 404 -1 O THR B 402 N VAL B 388 SITE 1 AC1 15 LEU A 246 LEU A 315 GLY A 316 LEU A 318 SITE 2 AC1 15 MET A 336 PHE A 356 PHE A 372 TRP A 373 SITE 3 AC1 15 LEU A 391 VAL A 393 GLU A 394 PRO A 396 SITE 4 AC1 15 HIS A 397 GLU B 394 ASP B 395 SITE 1 AC2 14 LEU B 246 LEU B 315 GLY B 316 MET B 336 SITE 2 AC2 14 PHE B 356 PHE B 372 TRP B 373 GLN B 374 SITE 3 AC2 14 LEU B 391 VAL B 393 GLU B 394 PRO B 396 SITE 4 AC2 14 HIS B 397 HOH B 631 CRYST1 81.470 49.940 105.320 90.00 105.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012274 0.000000 0.003314 0.00000 SCALE2 0.000000 0.020024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009835 0.00000