data_7KZ1 # _entry.id 7KZ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7KZ1 pdb_00007kz1 10.2210/pdb7kz1/pdb WWPDB D_1000253298 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KZ1 _pdbx_database_status.recvd_initial_deposition_date 2020-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pidugu, L.S.' 1 0000-0002-3426-9003 'Bright, H.' 2 ? 'Pozharski, E.' 3 0000-0001-7012-5376 'Drohat, A.C.' 4 0000-0002-7458-8770 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 433 _citation.language ? _citation.page_first 167097 _citation.page_last 167097 _citation.title 'Structural Insights into the Mechanism of Base Excision by MBD4.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2021.167097 _citation.pdbx_database_id_PubMed 34107280 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pidugu, L.S.' 1 ? primary 'Bright, H.' 2 ? primary 'Lin, W.J.' 3 ? primary 'Majumdar, C.' 4 ? primary 'Van Ostrand, R.P.' 5 ? primary 'David, S.S.' 6 ? primary 'Pozharski, E.' 7 ? primary 'Drohat, A.C.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7KZ1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.669 _cell.length_a_esd ? _cell.length_b 54.292 _cell.length_b_esd ? _cell.length_c 98.767 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 18671.521 1 3.2.2.- ? 'glycosylase domain (UNP residues 426-580)' ? 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*CP*GP*(ORP)P*GP*CP*AP*GP*C)-3') ; 3540.283 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3') ; 3695.390 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 water nat water 18.015 152 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding endonuclease 1,Methyl-CpG-binding protein MBD4,Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELL KPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; ;GSALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELL KPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DG)(DC)(DG)(ORP)(DG)(DC)(DA)(DG)(DC)' CCAGCGXGCAGC C ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DG)' GCTGCGCGCTGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 LEU n 1 5 SER n 1 6 PRO n 1 7 PRO n 1 8 ARG n 1 9 ARG n 1 10 LYS n 1 11 ALA n 1 12 PHE n 1 13 LYS n 1 14 LYS n 1 15 TRP n 1 16 THR n 1 17 PRO n 1 18 PRO n 1 19 ARG n 1 20 SER n 1 21 PRO n 1 22 PHE n 1 23 ASN n 1 24 LEU n 1 25 VAL n 1 26 GLN n 1 27 GLU n 1 28 THR n 1 29 LEU n 1 30 PHE n 1 31 HIS n 1 32 ASP n 1 33 PRO n 1 34 TRP n 1 35 LYS n 1 36 LEU n 1 37 LEU n 1 38 ILE n 1 39 ALA n 1 40 THR n 1 41 ILE n 1 42 PHE n 1 43 LEU n 1 44 ASN n 1 45 ARG n 1 46 THR n 1 47 SER n 1 48 GLY n 1 49 LYS n 1 50 MET n 1 51 ALA n 1 52 ILE n 1 53 PRO n 1 54 VAL n 1 55 LEU n 1 56 TRP n 1 57 LYS n 1 58 PHE n 1 59 LEU n 1 60 GLU n 1 61 LYS n 1 62 TYR n 1 63 PRO n 1 64 SER n 1 65 ALA n 1 66 GLU n 1 67 VAL n 1 68 ALA n 1 69 ARG n 1 70 THR n 1 71 ALA n 1 72 ASP n 1 73 TRP n 1 74 ARG n 1 75 ASP n 1 76 VAL n 1 77 SER n 1 78 GLU n 1 79 LEU n 1 80 LEU n 1 81 LYS n 1 82 PRO n 1 83 LEU n 1 84 GLY n 1 85 LEU n 1 86 TYR n 1 87 ASP n 1 88 LEU n 1 89 ARG n 1 90 ALA n 1 91 LYS n 1 92 THR n 1 93 ILE n 1 94 VAL n 1 95 LYS n 1 96 PHE n 1 97 SER n 1 98 ASP n 1 99 GLU n 1 100 TYR n 1 101 LEU n 1 102 THR n 1 103 LYS n 1 104 GLN n 1 105 TRP n 1 106 LYS n 1 107 TYR n 1 108 PRO n 1 109 ILE n 1 110 GLU n 1 111 LEU n 1 112 HIS n 1 113 GLY n 1 114 ILE n 1 115 GLY n 1 116 LYS n 1 117 TYR n 1 118 GLY n 1 119 ASN n 1 120 ASP n 1 121 SER n 1 122 TYR n 1 123 ARG n 1 124 ILE n 1 125 PHE n 1 126 CYS n 1 127 VAL n 1 128 ASN n 1 129 GLU n 1 130 TRP n 1 131 LYS n 1 132 GLN n 1 133 VAL n 1 134 HIS n 1 135 PRO n 1 136 GLU n 1 137 ASP n 1 138 HIS n 1 139 LYS n 1 140 LEU n 1 141 ASN n 1 142 LYS n 1 143 TYR n 1 144 HIS n 1 145 ASP n 1 146 TRP n 1 147 LEU n 1 148 TRP n 1 149 GLU n 1 150 ASN n 1 151 HIS n 1 152 GLU n 1 153 LYS n 1 154 LEU n 1 155 SER n 1 156 LEU n 1 157 SER n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 ORP n 2 8 DG n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DC n 3 6 DG n 3 7 DC n 3 8 DG n 3 9 DC n 3 10 DT n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 157 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MBD4, MED1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MBD4_HUMAN O95243 ? 1 ;ALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP LGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; 426 2 PDB 7KZ1 7KZ1 ? 2 ? 1 3 PDB 7KZ1 7KZ1 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7KZ1 A 3 ? 157 ? O95243 426 ? 580 ? 426 580 2 2 7KZ1 C 1 ? 12 ? 7KZ1 1 ? 12 ? 1 12 3 3 7KZ1 D 1 ? 12 ? 7KZ1 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7KZ1 GLY A 1 ? UNP O95243 ? ? 'expression tag' 424 1 1 7KZ1 SER A 2 ? UNP O95243 ? ? 'expression tag' 425 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KZ1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG400, Tris-HCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Liquid nitrogen-cooled double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7KZ1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.620 _reflns.d_resolution_low 37.610 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28461 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.058 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.620 1.650 ? ? ? ? ? ? 1361 98.300 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.000 ? ? ? ? ? 1.537 ? 1 1 0.239 ? ? 8.880 37.610 ? ? ? ? ? ? 222 99.400 ? ? ? ? ? ? ? ? ? ? ? ? ? 11.500 ? ? ? ? ? 0.023 ? 2 1 0.998 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 118.520 _refine.B_iso_mean 37.2099 _refine.B_iso_min 12.760 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KZ1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6200 _refine.ls_d_res_low 37.6100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28206 _refine.ls_number_reflns_R_free 1376 _refine.ls_number_reflns_R_work 26830 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.2300 _refine.ls_percent_reflns_R_free 4.8800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1829 _refine.ls_R_factor_R_free 0.2054 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1818 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.330 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 4DK9' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.9600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.6200 _refine_hist.d_res_low 37.6100 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1839 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 167 _refine_hist.pdbx_B_iso_mean_ligand 61.00 _refine_hist.pdbx_B_iso_mean_solvent 45.96 _refine_hist.pdbx_number_atoms_protein 1191 _refine_hist.pdbx_number_atoms_nucleic_acid 479 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6200 1.6800 2612 . 124 2488 94.0000 . . . 0.3433 0.0000 0.3196 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.6800 1.7500 2785 . 123 2662 100.0000 . . . 0.3245 0.0000 0.2926 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.7500 1.8300 2791 . 140 2651 100.0000 . . . 0.2591 0.0000 0.2525 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.8300 1.9200 2796 . 139 2657 100.0000 . . . 0.2856 0.0000 0.2268 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.9200 2.0400 2802 . 129 2673 100.0000 . . . 0.2353 0.0000 0.2069 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.0400 2.2000 2807 . 142 2665 100.0000 . . . 0.2358 0.0000 0.1871 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.2000 2.4200 2841 . 146 2695 100.0000 . . . 0.2272 0.0000 0.1814 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.4200 2.7700 2847 . 145 2702 100.0000 . . . 0.2097 0.0000 0.1815 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.7700 3.4900 2890 . 133 2757 100.0000 . . . 0.2033 0.0000 0.1659 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4900 37.6100 3035 . 155 2880 100.0000 . . . 0.1583 0.0000 0.1548 . . . . . . . 10 . . . # _struct.entry_id 7KZ1 _struct.title 'Human MBD4 glycosylase domain bound to DNA containing an abasic site' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KZ1 _struct_keywords.text 'protein-DNA complex, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 25 ? PHE A 30 ? VAL A 448 PHE A 453 1 ? 6 HELX_P HELX_P2 AA2 ASP A 32 ? LEU A 43 ? ASP A 455 LEU A 466 1 ? 12 HELX_P HELX_P3 AA3 SER A 47 ? TYR A 62 ? SER A 470 TYR A 485 1 ? 16 HELX_P HELX_P4 AA4 SER A 64 ? ARG A 69 ? SER A 487 ARG A 492 1 ? 6 HELX_P HELX_P5 AA5 ASP A 72 ? LYS A 81 ? ASP A 495 LYS A 504 1 ? 10 HELX_P HELX_P6 AA6 PRO A 82 ? GLY A 84 ? PRO A 505 GLY A 507 5 ? 3 HELX_P HELX_P7 AA7 LEU A 85 ? LYS A 103 ? LEU A 508 LYS A 526 1 ? 19 HELX_P HELX_P8 AA8 TYR A 107 ? LEU A 111 ? TYR A 530 LEU A 534 5 ? 5 HELX_P HELX_P9 AA9 GLY A 115 ? CYS A 126 ? GLY A 538 CYS A 549 1 ? 12 HELX_P HELX_P10 AB1 GLU A 129 ? VAL A 133 ? GLU A 552 VAL A 556 5 ? 5 HELX_P HELX_P11 AB2 ASP A 137 ? SER A 155 ? ASP A 560 SER A 578 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B ORP 7 P ? ? C DG 6 C ORP 7 1_555 ? ? ? ? ? ? ? 1.553 ? ? covale2 covale one ? B ORP 7 O3 ? ? ? 1_555 B DG 8 P ? ? C ORP 7 C DG 8 1_555 ? ? ? ? ? ? ? 1.560 ? ? metalc1 metalc ? ? A ILE 109 O ? ? ? 1_555 F NA . NA ? ? A ILE 532 A NA 703 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc2 metalc ? ? A LEU 111 O ? ? ? 1_555 F NA . NA ? ? A LEU 534 A NA 703 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc3 metalc ? ? A ILE 114 O ? ? ? 1_555 F NA . NA ? ? A ILE 537 A NA 703 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 703 A HOH 866 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 B DA 10 OP1 ? ? A NA 703 C DA 10 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 703 C HOH 109 1_555 ? ? ? ? ? ? ? 2.563 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 7 N3 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 7 O2 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 7 N4 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 3 N3 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 3 O4 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7KZ1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024589 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010125 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 424 ? ? ? A . n A 1 2 SER 2 425 ? ? ? A . n A 1 3 ALA 3 426 ? ? ? A . n A 1 4 LEU 4 427 ? ? ? A . n A 1 5 SER 5 428 ? ? ? A . n A 1 6 PRO 6 429 ? ? ? A . n A 1 7 PRO 7 430 ? ? ? A . n A 1 8 ARG 8 431 ? ? ? A . n A 1 9 ARG 9 432 ? ? ? A . n A 1 10 LYS 10 433 ? ? ? A . n A 1 11 ALA 11 434 ? ? ? A . n A 1 12 PHE 12 435 ? ? ? A . n A 1 13 LYS 13 436 436 LYS LYS A . n A 1 14 LYS 14 437 437 LYS LYS A . n A 1 15 TRP 15 438 438 TRP TRP A . n A 1 16 THR 16 439 439 THR THR A . n A 1 17 PRO 17 440 440 PRO PRO A . n A 1 18 PRO 18 441 441 PRO PRO A . n A 1 19 ARG 19 442 442 ARG ARG A . n A 1 20 SER 20 443 443 SER SER A . n A 1 21 PRO 21 444 444 PRO PRO A . n A 1 22 PHE 22 445 445 PHE PHE A . n A 1 23 ASN 23 446 446 ASN ASN A . n A 1 24 LEU 24 447 447 LEU LEU A . n A 1 25 VAL 25 448 448 VAL VAL A . n A 1 26 GLN 26 449 449 GLN GLN A . n A 1 27 GLU 27 450 450 GLU GLU A . n A 1 28 THR 28 451 451 THR THR A . n A 1 29 LEU 29 452 452 LEU LEU A . n A 1 30 PHE 30 453 453 PHE PHE A . n A 1 31 HIS 31 454 454 HIS HIS A . n A 1 32 ASP 32 455 455 ASP ASP A . n A 1 33 PRO 33 456 456 PRO PRO A . n A 1 34 TRP 34 457 457 TRP TRP A . n A 1 35 LYS 35 458 458 LYS LYS A . n A 1 36 LEU 36 459 459 LEU LEU A . n A 1 37 LEU 37 460 460 LEU LEU A . n A 1 38 ILE 38 461 461 ILE ILE A . n A 1 39 ALA 39 462 462 ALA ALA A . n A 1 40 THR 40 463 463 THR THR A . n A 1 41 ILE 41 464 464 ILE ILE A . n A 1 42 PHE 42 465 465 PHE PHE A . n A 1 43 LEU 43 466 466 LEU LEU A . n A 1 44 ASN 44 467 467 ASN ASN A . n A 1 45 ARG 45 468 468 ARG ARG A . n A 1 46 THR 46 469 469 THR THR A . n A 1 47 SER 47 470 470 SER SER A . n A 1 48 GLY 48 471 471 GLY GLY A . n A 1 49 LYS 49 472 472 LYS LYS A . n A 1 50 MET 50 473 473 MET MET A . n A 1 51 ALA 51 474 474 ALA ALA A . n A 1 52 ILE 52 475 475 ILE ILE A . n A 1 53 PRO 53 476 476 PRO PRO A . n A 1 54 VAL 54 477 477 VAL VAL A . n A 1 55 LEU 55 478 478 LEU LEU A . n A 1 56 TRP 56 479 479 TRP TRP A . n A 1 57 LYS 57 480 480 LYS LYS A . n A 1 58 PHE 58 481 481 PHE PHE A . n A 1 59 LEU 59 482 482 LEU LEU A . n A 1 60 GLU 60 483 483 GLU GLU A . n A 1 61 LYS 61 484 484 LYS LYS A . n A 1 62 TYR 62 485 485 TYR TYR A . n A 1 63 PRO 63 486 486 PRO PRO A . n A 1 64 SER 64 487 487 SER SER A . n A 1 65 ALA 65 488 488 ALA ALA A . n A 1 66 GLU 66 489 489 GLU GLU A . n A 1 67 VAL 67 490 490 VAL VAL A . n A 1 68 ALA 68 491 491 ALA ALA A . n A 1 69 ARG 69 492 492 ARG ARG A . n A 1 70 THR 70 493 493 THR THR A . n A 1 71 ALA 71 494 494 ALA ALA A . n A 1 72 ASP 72 495 495 ASP ASP A . n A 1 73 TRP 73 496 496 TRP TRP A . n A 1 74 ARG 74 497 497 ARG ARG A . n A 1 75 ASP 75 498 498 ASP ASP A . n A 1 76 VAL 76 499 499 VAL VAL A . n A 1 77 SER 77 500 500 SER SER A . n A 1 78 GLU 78 501 501 GLU GLU A . n A 1 79 LEU 79 502 502 LEU LEU A . n A 1 80 LEU 80 503 503 LEU LEU A . n A 1 81 LYS 81 504 504 LYS LYS A . n A 1 82 PRO 82 505 505 PRO PRO A . n A 1 83 LEU 83 506 506 LEU LEU A . n A 1 84 GLY 84 507 507 GLY GLY A . n A 1 85 LEU 85 508 508 LEU LEU A . n A 1 86 TYR 86 509 509 TYR TYR A . n A 1 87 ASP 87 510 510 ASP ASP A . n A 1 88 LEU 88 511 511 LEU LEU A . n A 1 89 ARG 89 512 512 ARG ARG A . n A 1 90 ALA 90 513 513 ALA ALA A . n A 1 91 LYS 91 514 514 LYS LYS A . n A 1 92 THR 92 515 515 THR THR A . n A 1 93 ILE 93 516 516 ILE ILE A . n A 1 94 VAL 94 517 517 VAL VAL A . n A 1 95 LYS 95 518 518 LYS LYS A . n A 1 96 PHE 96 519 519 PHE PHE A . n A 1 97 SER 97 520 520 SER SER A . n A 1 98 ASP 98 521 521 ASP ASP A . n A 1 99 GLU 99 522 522 GLU GLU A . n A 1 100 TYR 100 523 523 TYR TYR A . n A 1 101 LEU 101 524 524 LEU LEU A . n A 1 102 THR 102 525 525 THR THR A . n A 1 103 LYS 103 526 526 LYS LYS A . n A 1 104 GLN 104 527 527 GLN GLN A . n A 1 105 TRP 105 528 528 TRP TRP A . n A 1 106 LYS 106 529 529 LYS LYS A . n A 1 107 TYR 107 530 530 TYR TYR A . n A 1 108 PRO 108 531 531 PRO PRO A . n A 1 109 ILE 109 532 532 ILE ILE A . n A 1 110 GLU 110 533 533 GLU GLU A . n A 1 111 LEU 111 534 534 LEU LEU A . n A 1 112 HIS 112 535 535 HIS HIS A . n A 1 113 GLY 113 536 536 GLY GLY A . n A 1 114 ILE 114 537 537 ILE ILE A . n A 1 115 GLY 115 538 538 GLY GLY A . n A 1 116 LYS 116 539 539 LYS LYS A . n A 1 117 TYR 117 540 540 TYR TYR A . n A 1 118 GLY 118 541 541 GLY GLY A . n A 1 119 ASN 119 542 542 ASN ASN A . n A 1 120 ASP 120 543 543 ASP ASP A . n A 1 121 SER 121 544 544 SER SER A . n A 1 122 TYR 122 545 545 TYR TYR A . n A 1 123 ARG 123 546 546 ARG ARG A . n A 1 124 ILE 124 547 547 ILE ILE A . n A 1 125 PHE 125 548 548 PHE PHE A . n A 1 126 CYS 126 549 549 CYS CYS A . n A 1 127 VAL 127 550 550 VAL VAL A . n A 1 128 ASN 128 551 551 ASN ASN A . n A 1 129 GLU 129 552 552 GLU GLU A . n A 1 130 TRP 130 553 553 TRP TRP A . n A 1 131 LYS 131 554 554 LYS LYS A . n A 1 132 GLN 132 555 555 GLN GLN A . n A 1 133 VAL 133 556 556 VAL VAL A . n A 1 134 HIS 134 557 557 HIS HIS A . n A 1 135 PRO 135 558 558 PRO PRO A . n A 1 136 GLU 136 559 559 GLU GLU A . n A 1 137 ASP 137 560 560 ASP ASP A . n A 1 138 HIS 138 561 561 HIS HIS A . n A 1 139 LYS 139 562 562 LYS LYS A . n A 1 140 LEU 140 563 563 LEU LEU A . n A 1 141 ASN 141 564 564 ASN ASN A . n A 1 142 LYS 142 565 565 LYS LYS A . n A 1 143 TYR 143 566 566 TYR TYR A . n A 1 144 HIS 144 567 567 HIS HIS A . n A 1 145 ASP 145 568 568 ASP ASP A . n A 1 146 TRP 146 569 569 TRP TRP A . n A 1 147 LEU 147 570 570 LEU LEU A . n A 1 148 TRP 148 571 571 TRP TRP A . n A 1 149 GLU 149 572 572 GLU GLU A . n A 1 150 ASN 150 573 573 ASN ASN A . n A 1 151 HIS 151 574 574 HIS HIS A . n A 1 152 GLU 152 575 575 GLU GLU A . n A 1 153 LYS 153 576 576 LYS LYS A . n A 1 154 LEU 154 577 577 LEU LEU A . n A 1 155 SER 155 578 578 SER SER A . n A 1 156 LEU 156 579 ? ? ? A . n A 1 157 SER 157 580 ? ? ? A . n B 2 1 DC 1 1 1 DC DC C . n B 2 2 DC 2 2 2 DC DC C . n B 2 3 DA 3 3 3 DA DA C . n B 2 4 DG 4 4 4 DG DG C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DG 6 6 6 DG DG C . n B 2 7 ORP 7 7 7 ORP ORP C . n B 2 8 DG 8 8 8 DG DG C . n B 2 9 DC 9 9 9 DC DC C . n B 2 10 DA 10 10 10 DA DA C . n B 2 11 DG 11 11 11 DG DG C . n B 2 12 DC 12 12 12 DC DC C . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DC 2 2 2 DC DC D . n C 3 3 DT 3 3 3 DT DT D . n C 3 4 DG 4 4 4 DG DG D . n C 3 5 DC 5 5 5 DC DC D . n C 3 6 DG 6 6 6 DG DG D . n C 3 7 DC 7 7 7 DC DC D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DC 9 9 9 DC DC D . n C 3 10 DT 10 10 10 DT DT D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 DG 12 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 701 701 GOL GOL A . E 5 EDO 1 702 801 EDO EDO A . F 6 NA 1 703 1 NA NA A . G 7 HOH 1 801 195 HOH HOH A . G 7 HOH 2 802 20 HOH HOH A . G 7 HOH 3 803 38 HOH HOH A . G 7 HOH 4 804 69 HOH HOH A . G 7 HOH 5 805 114 HOH HOH A . G 7 HOH 6 806 137 HOH HOH A . G 7 HOH 7 807 319 HOH HOH A . G 7 HOH 8 808 58 HOH HOH A . G 7 HOH 9 809 36 HOH HOH A . G 7 HOH 10 810 49 HOH HOH A . G 7 HOH 11 811 396 HOH HOH A . G 7 HOH 12 812 126 HOH HOH A . G 7 HOH 13 813 411 HOH HOH A . G 7 HOH 14 814 74 HOH HOH A . G 7 HOH 15 815 409 HOH HOH A . G 7 HOH 16 816 41 HOH HOH A . G 7 HOH 17 817 23 HOH HOH A . G 7 HOH 18 818 61 HOH HOH A . G 7 HOH 19 819 42 HOH HOH A . G 7 HOH 20 820 332 HOH HOH A . G 7 HOH 21 821 293 HOH HOH A . G 7 HOH 22 822 408 HOH HOH A . G 7 HOH 23 823 10 HOH HOH A . G 7 HOH 24 824 45 HOH HOH A . G 7 HOH 25 825 399 HOH HOH A . G 7 HOH 26 826 31 HOH HOH A . G 7 HOH 27 827 16 HOH HOH A . G 7 HOH 28 828 14 HOH HOH A . G 7 HOH 29 829 48 HOH HOH A . G 7 HOH 30 830 25 HOH HOH A . G 7 HOH 31 831 8 HOH HOH A . G 7 HOH 32 832 118 HOH HOH A . G 7 HOH 33 833 52 HOH HOH A . G 7 HOH 34 834 19 HOH HOH A . G 7 HOH 35 835 89 HOH HOH A . G 7 HOH 36 836 39 HOH HOH A . G 7 HOH 37 837 7 HOH HOH A . G 7 HOH 38 838 108 HOH HOH A . G 7 HOH 39 839 15 HOH HOH A . G 7 HOH 40 840 94 HOH HOH A . G 7 HOH 41 841 5 HOH HOH A . G 7 HOH 42 842 26 HOH HOH A . G 7 HOH 43 843 2 HOH HOH A . G 7 HOH 44 844 57 HOH HOH A . G 7 HOH 45 845 12 HOH HOH A . G 7 HOH 46 846 257 HOH HOH A . G 7 HOH 47 847 117 HOH HOH A . G 7 HOH 48 848 28 HOH HOH A . G 7 HOH 49 849 405 HOH HOH A . G 7 HOH 50 850 106 HOH HOH A . G 7 HOH 51 851 299 HOH HOH A . G 7 HOH 52 852 72 HOH HOH A . G 7 HOH 53 853 11 HOH HOH A . G 7 HOH 54 854 98 HOH HOH A . G 7 HOH 55 855 250 HOH HOH A . G 7 HOH 56 856 63 HOH HOH A . G 7 HOH 57 857 92 HOH HOH A . G 7 HOH 58 858 394 HOH HOH A . G 7 HOH 59 859 43 HOH HOH A . G 7 HOH 60 860 109 HOH HOH A . G 7 HOH 61 861 29 HOH HOH A . G 7 HOH 62 862 68 HOH HOH A . G 7 HOH 63 863 364 HOH HOH A . G 7 HOH 64 864 277 HOH HOH A . G 7 HOH 65 865 3 HOH HOH A . G 7 HOH 66 866 13 HOH HOH A . G 7 HOH 67 867 163 HOH HOH A . G 7 HOH 68 868 4 HOH HOH A . G 7 HOH 69 869 33 HOH HOH A . G 7 HOH 70 870 392 HOH HOH A . G 7 HOH 71 871 167 HOH HOH A . G 7 HOH 72 872 50 HOH HOH A . G 7 HOH 73 873 432 HOH HOH A . G 7 HOH 74 874 73 HOH HOH A . G 7 HOH 75 875 154 HOH HOH A . G 7 HOH 76 876 181 HOH HOH A . G 7 HOH 77 877 414 HOH HOH A . G 7 HOH 78 878 153 HOH HOH A . G 7 HOH 79 879 261 HOH HOH A . G 7 HOH 80 880 30 HOH HOH A . G 7 HOH 81 881 344 HOH HOH A . G 7 HOH 82 882 97 HOH HOH A . G 7 HOH 83 883 256 HOH HOH A . G 7 HOH 84 884 350 HOH HOH A . G 7 HOH 85 885 420 HOH HOH A . G 7 HOH 86 886 406 HOH HOH A . G 7 HOH 87 887 183 HOH HOH A . G 7 HOH 88 888 265 HOH HOH A . G 7 HOH 89 889 54 HOH HOH A . G 7 HOH 90 890 266 HOH HOH A . G 7 HOH 91 891 407 HOH HOH A . G 7 HOH 92 892 419 HOH HOH A . G 7 HOH 93 893 398 HOH HOH A . G 7 HOH 94 894 79 HOH HOH A . G 7 HOH 95 895 214 HOH HOH A . G 7 HOH 96 896 186 HOH HOH A . G 7 HOH 97 897 400 HOH HOH A . G 7 HOH 98 898 75 HOH HOH A . G 7 HOH 99 899 413 HOH HOH A . G 7 HOH 100 900 337 HOH HOH A . G 7 HOH 101 901 430 HOH HOH A . G 7 HOH 102 902 142 HOH HOH A . G 7 HOH 103 903 67 HOH HOH A . G 7 HOH 104 904 404 HOH HOH A . H 7 HOH 1 101 402 HOH HOH C . H 7 HOH 2 102 268 HOH HOH C . H 7 HOH 3 103 342 HOH HOH C . H 7 HOH 4 104 138 HOH HOH C . H 7 HOH 5 105 143 HOH HOH C . H 7 HOH 6 106 27 HOH HOH C . H 7 HOH 7 107 40 HOH HOH C . H 7 HOH 8 108 426 HOH HOH C . H 7 HOH 9 109 104 HOH HOH C . H 7 HOH 10 110 155 HOH HOH C . H 7 HOH 11 111 131 HOH HOH C . H 7 HOH 12 112 157 HOH HOH C . H 7 HOH 13 113 17 HOH HOH C . H 7 HOH 14 114 1 HOH HOH C . H 7 HOH 15 115 431 HOH HOH C . H 7 HOH 16 116 233 HOH HOH C . H 7 HOH 17 117 85 HOH HOH C . H 7 HOH 18 118 160 HOH HOH C . H 7 HOH 19 119 144 HOH HOH C . H 7 HOH 20 120 245 HOH HOH C . H 7 HOH 21 121 389 HOH HOH C . H 7 HOH 22 122 168 HOH HOH C . H 7 HOH 23 123 151 HOH HOH C . H 7 HOH 24 124 418 HOH HOH C . H 7 HOH 25 125 145 HOH HOH C . H 7 HOH 26 126 417 HOH HOH C . H 7 HOH 27 127 239 HOH HOH C . H 7 HOH 28 128 305 HOH HOH C . H 7 HOH 29 129 82 HOH HOH C . H 7 HOH 30 130 184 HOH HOH C . I 7 HOH 1 101 65 HOH HOH D . I 7 HOH 2 102 177 HOH HOH D . I 7 HOH 3 103 132 HOH HOH D . I 7 HOH 4 104 289 HOH HOH D . I 7 HOH 5 105 329 HOH HOH D . I 7 HOH 6 106 429 HOH HOH D . I 7 HOH 7 107 158 HOH HOH D . I 7 HOH 8 108 172 HOH HOH D . I 7 HOH 9 109 134 HOH HOH D . I 7 HOH 10 110 129 HOH HOH D . I 7 HOH 11 111 421 HOH HOH D . I 7 HOH 12 112 244 HOH HOH D . I 7 HOH 13 113 240 HOH HOH D . I 7 HOH 14 114 290 HOH HOH D . I 7 HOH 15 115 124 HOH HOH D . I 7 HOH 16 116 427 HOH HOH D . I 7 HOH 17 117 133 HOH HOH D . I 7 HOH 18 118 428 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4070 ? 1 MORE -24 ? 1 'SSA (A^2)' 10350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ILE 109 ? A ILE 532 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? A LEU 111 ? A LEU 534 ? 1_555 100.9 ? 2 O ? A ILE 109 ? A ILE 532 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? A ILE 114 ? A ILE 537 ? 1_555 91.8 ? 3 O ? A LEU 111 ? A LEU 534 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? A ILE 114 ? A ILE 537 ? 1_555 96.5 ? 4 O ? A ILE 109 ? A ILE 532 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 92.1 ? 5 O ? A LEU 111 ? A LEU 534 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 84.8 ? 6 O ? A ILE 114 ? A ILE 537 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 175.6 ? 7 O ? A ILE 109 ? A ILE 532 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 OP1 ? B DA 10 ? C DA 10 ? 1_555 171.1 ? 8 O ? A LEU 111 ? A LEU 534 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 OP1 ? B DA 10 ? C DA 10 ? 1_555 87.8 ? 9 O ? A ILE 114 ? A ILE 537 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 OP1 ? B DA 10 ? C DA 10 ? 1_555 88.9 ? 10 O ? G HOH . ? A HOH 866 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 OP1 ? B DA 10 ? C DA 10 ? 1_555 86.9 ? 11 O ? A ILE 109 ? A ILE 532 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? H HOH . ? C HOH 109 ? 1_555 86.3 ? 12 O ? A LEU 111 ? A LEU 534 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? H HOH . ? C HOH 109 ? 1_555 171.3 ? 13 O ? A ILE 114 ? A ILE 537 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? H HOH . ? C HOH 109 ? 1_555 88.1 ? 14 O ? G HOH . ? A HOH 866 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? H HOH . ? C HOH 109 ? 1_555 90.1 ? 15 OP1 ? B DA 10 ? C DA 10 ? 1_555 NA ? F NA . ? A NA 703 ? 1_555 O ? H HOH . ? C HOH 109 ? 1_555 84.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-10 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -5.2846 -16.4038 17.3377 0.1761 ? 0.0524 ? -0.0229 ? 0.2809 ? 0.0491 ? 0.2966 ? 4.4561 ? -1.1495 ? -3.0834 ? 3.4833 ? -1.6444 ? 3.9836 ? -0.0567 ? -0.3948 ? -0.6084 ? -0.0226 ? -0.1168 ? -0.2325 ? 0.4361 ? 0.6040 ? 0.0294 ? 2 'X-RAY DIFFRACTION' ? refined -18.8529 -1.6560 20.7562 0.1415 ? -0.0061 ? 0.0071 ? 0.1463 ? -0.0352 ? 0.1085 ? 2.7485 ? 0.7224 ? -0.2423 ? 3.1597 ? 0.1854 ? 2.1823 ? 0.1364 ? -0.2413 ? 0.2219 ? 0.3046 ? -0.1388 ? 0.1241 ? -0.1276 ? -0.0734 ? 0.0102 ? 3 'X-RAY DIFFRACTION' ? refined -21.5791 -10.3128 6.9859 0.2238 ? 0.0156 ? -0.0455 ? 0.2349 ? -0.0606 ? 0.2026 ? 5.4653 ? 0.2404 ? -2.0065 ? 7.3719 ? 1.1564 ? 2.4683 ? 0.1108 ? 0.5329 ? -0.2805 ? -0.2099 ? -0.1508 ? 0.5288 ? 0.1473 ? -0.4381 ? 0.0254 ? 4 'X-RAY DIFFRACTION' ? refined -8.6020 -12.7497 6.1080 0.1909 ? 0.0200 ? -0.0250 ? 0.1953 ? -0.0498 ? 0.1190 ? 6.0953 ? -0.9677 ? -2.3625 ? 4.3614 ? -1.6742 ? 4.7921 ? 0.1281 ? 0.2728 ? -0.2645 ? -0.4707 ? -0.1416 ? -0.0189 ? 0.1697 ? 0.0187 ? -0.0081 ? 5 'X-RAY DIFFRACTION' ? refined 1.7248 -12.6023 8.2031 0.1731 ? 0.0179 ? 0.0419 ? 0.3471 ? -0.0114 ? 0.3061 ? 7.2456 ? -4.0739 ? -0.8429 ? 3.8408 ? 3.4549 ? 8.0933 ? 0.1111 ? -0.2471 ? 0.0624 ? -0.5971 ? 0.2385 ? -0.9031 ? 0.0250 ? 0.7205 ? -0.3747 ? 6 'X-RAY DIFFRACTION' ? refined -2.0534 -22.2892 11.4891 0.5552 ? 0.1712 ? -0.2499 ? 0.5067 ? -0.2422 ? 0.7802 ? 6.3488 ? -0.7978 ? -4.2240 ? 2.3546 ? -1.4222 ? 6.9454 ? -0.5939 ? 0.4036 ? -2.5094 ? -0.1949 ? -0.8068 ? 0.5229 ? 1.5406 ? 0.9261 ? 1.5729 ? 7 'X-RAY DIFFRACTION' ? refined -9.0259 10.0425 11.5577 0.3424 ? -0.0246 ? -0.0963 ? 0.2389 ? -0.0019 ? 0.6179 ? 0.2594 ? 0.5974 ? -0.1690 ? 2.9954 ? 2.2725 ? 4.7808 ? -0.5724 ? 0.3505 ? 0.8903 ? -0.8488 ? 0.5193 ? -0.4933 ? -0.8918 ? 0.4474 ? 0.2190 ? 8 'X-RAY DIFFRACTION' ? refined -7.7223 11.8216 13.7187 0.3948 ? -0.0539 ? 0.0543 ? 0.1876 ? -0.1115 ? 0.5140 ? 8.2558 ? 1.6015 ? 1.6787 ? 2.8354 ? -1.3921 ? 4.8128 ? -0.1990 ? 0.2461 ? 0.1258 ? -0.6009 ? 0.2325 ? -0.6513 ? -0.3909 ? 0.4339 ? -0.1132 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 436 ? ? ? A 455 ? ? ;chain 'A' and (resid 436 through 455 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 456 ? ? ? A 525 ? ? ;chain 'A' and (resid 456 through 525 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 526 ? ? ? A 538 ? ? ;chain 'A' and (resid 526 through 538 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 539 ? ? ? A 560 ? ? ;chain 'A' and (resid 539 through 560 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 561 ? ? ? A 573 ? ? ;chain 'A' and (resid 561 through 573 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? A 574 ? ? ? A 580 ? ? ;chain 'A' and (resid 574 through 580 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? C 1 ? ? ? C 12 ? ? ;chain 'C' and (resid 1 through 12 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? D 1 ? ? ? D 12 ? ? ;chain 'D' and (resid 1 through 12 ) ; # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Phil Evans' ? 13/12/18 ? ? ? ? http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? Aimless ? ? program 0.7.4 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 5 # _pdbx_entry_details.entry_id 7KZ1 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 885 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 895 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 437 ? CD ? A LYS 14 CD 2 1 Y 1 A LYS 437 ? CE ? A LYS 14 CE 3 1 Y 1 A LYS 437 ? NZ ? A LYS 14 NZ 4 1 Y 1 A LYS 472 ? CE ? A LYS 49 CE 5 1 Y 1 A LYS 472 ? NZ ? A LYS 49 NZ 6 1 Y 1 A LYS 480 ? CE ? A LYS 57 CE 7 1 Y 1 A LYS 480 ? NZ ? A LYS 57 NZ 8 1 Y 1 A GLU 483 ? CD ? A GLU 60 CD 9 1 Y 1 A GLU 483 ? OE1 ? A GLU 60 OE1 10 1 Y 1 A GLU 483 ? OE2 ? A GLU 60 OE2 11 1 Y 1 A LYS 484 ? CD ? A LYS 61 CD 12 1 Y 1 A LYS 484 ? CE ? A LYS 61 CE 13 1 Y 1 A LYS 484 ? NZ ? A LYS 61 NZ 14 1 Y 1 A LYS 526 ? CE ? A LYS 103 CE 15 1 Y 1 A LYS 526 ? NZ ? A LYS 103 NZ 16 1 Y 1 A HIS 561 ? CG ? A HIS 138 CG 17 1 Y 1 A HIS 561 ? ND1 ? A HIS 138 ND1 18 1 Y 1 A HIS 561 ? CD2 ? A HIS 138 CD2 19 1 Y 1 A HIS 561 ? CE1 ? A HIS 138 CE1 20 1 Y 1 A HIS 561 ? NE2 ? A HIS 138 NE2 21 1 Y 1 A GLU 575 ? CG ? A GLU 152 CG 22 1 Y 1 A GLU 575 ? CD ? A GLU 152 CD 23 1 Y 1 A GLU 575 ? OE1 ? A GLU 152 OE1 24 1 Y 1 A GLU 575 ? OE2 ? A GLU 152 OE2 25 1 Y 1 A LYS 576 ? CG ? A LYS 153 CG 26 1 Y 1 A LYS 576 ? CD ? A LYS 153 CD 27 1 Y 1 A LYS 576 ? CE ? A LYS 153 CE 28 1 Y 1 A LYS 576 ? NZ ? A LYS 153 NZ 29 1 Y 1 A SER 578 ? OG ? A SER 155 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 424 ? A GLY 1 2 1 Y 1 A SER 425 ? A SER 2 3 1 Y 1 A ALA 426 ? A ALA 3 4 1 Y 1 A LEU 427 ? A LEU 4 5 1 Y 1 A SER 428 ? A SER 5 6 1 Y 1 A PRO 429 ? A PRO 6 7 1 Y 1 A PRO 430 ? A PRO 7 8 1 Y 1 A ARG 431 ? A ARG 8 9 1 Y 1 A ARG 432 ? A ARG 9 10 1 Y 1 A LYS 433 ? A LYS 10 11 1 Y 1 A ALA 434 ? A ALA 11 12 1 Y 1 A PHE 435 ? A PHE 12 13 1 Y 1 A LEU 579 ? A LEU 156 14 1 Y 1 A SER 580 ? A SER 157 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 GOL C1 C N N 290 GOL O1 O N N 291 GOL C2 C N N 292 GOL O2 O N N 293 GOL C3 C N N 294 GOL O3 O N N 295 GOL H11 H N N 296 GOL H12 H N N 297 GOL HO1 H N N 298 GOL H2 H N N 299 GOL HO2 H N N 300 GOL H31 H N N 301 GOL H32 H N N 302 GOL HO3 H N N 303 HIS N N N N 304 HIS CA C N S 305 HIS C C N N 306 HIS O O N N 307 HIS CB C N N 308 HIS CG C Y N 309 HIS ND1 N Y N 310 HIS CD2 C Y N 311 HIS CE1 C Y N 312 HIS NE2 N Y N 313 HIS OXT O N N 314 HIS H H N N 315 HIS H2 H N N 316 HIS HA H N N 317 HIS HB2 H N N 318 HIS HB3 H N N 319 HIS HD1 H N N 320 HIS HD2 H N N 321 HIS HE1 H N N 322 HIS HE2 H N N 323 HIS HXT H N N 324 HOH O O N N 325 HOH H1 H N N 326 HOH H2 H N N 327 ILE N N N N 328 ILE CA C N S 329 ILE C C N N 330 ILE O O N N 331 ILE CB C N S 332 ILE CG1 C N N 333 ILE CG2 C N N 334 ILE CD1 C N N 335 ILE OXT O N N 336 ILE H H N N 337 ILE H2 H N N 338 ILE HA H N N 339 ILE HB H N N 340 ILE HG12 H N N 341 ILE HG13 H N N 342 ILE HG21 H N N 343 ILE HG22 H N N 344 ILE HG23 H N N 345 ILE HD11 H N N 346 ILE HD12 H N N 347 ILE HD13 H N N 348 ILE HXT H N N 349 LEU N N N N 350 LEU CA C N S 351 LEU C C N N 352 LEU O O N N 353 LEU CB C N N 354 LEU CG C N N 355 LEU CD1 C N N 356 LEU CD2 C N N 357 LEU OXT O N N 358 LEU H H N N 359 LEU H2 H N N 360 LEU HA H N N 361 LEU HB2 H N N 362 LEU HB3 H N N 363 LEU HG H N N 364 LEU HD11 H N N 365 LEU HD12 H N N 366 LEU HD13 H N N 367 LEU HD21 H N N 368 LEU HD22 H N N 369 LEU HD23 H N N 370 LEU HXT H N N 371 LYS N N N N 372 LYS CA C N S 373 LYS C C N N 374 LYS O O N N 375 LYS CB C N N 376 LYS CG C N N 377 LYS CD C N N 378 LYS CE C N N 379 LYS NZ N N N 380 LYS OXT O N N 381 LYS H H N N 382 LYS H2 H N N 383 LYS HA H N N 384 LYS HB2 H N N 385 LYS HB3 H N N 386 LYS HG2 H N N 387 LYS HG3 H N N 388 LYS HD2 H N N 389 LYS HD3 H N N 390 LYS HE2 H N N 391 LYS HE3 H N N 392 LYS HZ1 H N N 393 LYS HZ2 H N N 394 LYS HZ3 H N N 395 LYS HXT H N N 396 MET N N N N 397 MET CA C N S 398 MET C C N N 399 MET O O N N 400 MET CB C N N 401 MET CG C N N 402 MET SD S N N 403 MET CE C N N 404 MET OXT O N N 405 MET H H N N 406 MET H2 H N N 407 MET HA H N N 408 MET HB2 H N N 409 MET HB3 H N N 410 MET HG2 H N N 411 MET HG3 H N N 412 MET HE1 H N N 413 MET HE2 H N N 414 MET HE3 H N N 415 MET HXT H N N 416 NA NA NA N N 417 ORP C1 C N S 418 ORP O1 O N N 419 ORP C2 C N N 420 ORP C3 C N S 421 ORP O3 O N N 422 ORP C4 C N R 423 ORP O4 O N N 424 ORP C5 C N N 425 ORP O5 O N N 426 ORP P P N N 427 ORP O1P O N N 428 ORP O2P O N N 429 ORP O3P O N N 430 ORP H1 H N N 431 ORP HO1 H N N 432 ORP H21 H N N 433 ORP H22 H N N 434 ORP H3 H N N 435 ORP HO3 H N N 436 ORP H4 H N N 437 ORP H51 H N N 438 ORP H52 H N N 439 ORP HOP2 H N N 440 ORP HOP3 H N N 441 PHE N N N N 442 PHE CA C N S 443 PHE C C N N 444 PHE O O N N 445 PHE CB C N N 446 PHE CG C Y N 447 PHE CD1 C Y N 448 PHE CD2 C Y N 449 PHE CE1 C Y N 450 PHE CE2 C Y N 451 PHE CZ C Y N 452 PHE OXT O N N 453 PHE H H N N 454 PHE H2 H N N 455 PHE HA H N N 456 PHE HB2 H N N 457 PHE HB3 H N N 458 PHE HD1 H N N 459 PHE HD2 H N N 460 PHE HE1 H N N 461 PHE HE2 H N N 462 PHE HZ H N N 463 PHE HXT H N N 464 PRO N N N N 465 PRO CA C N S 466 PRO C C N N 467 PRO O O N N 468 PRO CB C N N 469 PRO CG C N N 470 PRO CD C N N 471 PRO OXT O N N 472 PRO H H N N 473 PRO HA H N N 474 PRO HB2 H N N 475 PRO HB3 H N N 476 PRO HG2 H N N 477 PRO HG3 H N N 478 PRO HD2 H N N 479 PRO HD3 H N N 480 PRO HXT H N N 481 SER N N N N 482 SER CA C N S 483 SER C C N N 484 SER O O N N 485 SER CB C N N 486 SER OG O N N 487 SER OXT O N N 488 SER H H N N 489 SER H2 H N N 490 SER HA H N N 491 SER HB2 H N N 492 SER HB3 H N N 493 SER HG H N N 494 SER HXT H N N 495 THR N N N N 496 THR CA C N S 497 THR C C N N 498 THR O O N N 499 THR CB C N R 500 THR OG1 O N N 501 THR CG2 C N N 502 THR OXT O N N 503 THR H H N N 504 THR H2 H N N 505 THR HA H N N 506 THR HB H N N 507 THR HG1 H N N 508 THR HG21 H N N 509 THR HG22 H N N 510 THR HG23 H N N 511 THR HXT H N N 512 TRP N N N N 513 TRP CA C N S 514 TRP C C N N 515 TRP O O N N 516 TRP CB C N N 517 TRP CG C Y N 518 TRP CD1 C Y N 519 TRP CD2 C Y N 520 TRP NE1 N Y N 521 TRP CE2 C Y N 522 TRP CE3 C Y N 523 TRP CZ2 C Y N 524 TRP CZ3 C Y N 525 TRP CH2 C Y N 526 TRP OXT O N N 527 TRP H H N N 528 TRP H2 H N N 529 TRP HA H N N 530 TRP HB2 H N N 531 TRP HB3 H N N 532 TRP HD1 H N N 533 TRP HE1 H N N 534 TRP HE3 H N N 535 TRP HZ2 H N N 536 TRP HZ3 H N N 537 TRP HH2 H N N 538 TRP HXT H N N 539 TYR N N N N 540 TYR CA C N S 541 TYR C C N N 542 TYR O O N N 543 TYR CB C N N 544 TYR CG C Y N 545 TYR CD1 C Y N 546 TYR CD2 C Y N 547 TYR CE1 C Y N 548 TYR CE2 C Y N 549 TYR CZ C Y N 550 TYR OH O N N 551 TYR OXT O N N 552 TYR H H N N 553 TYR H2 H N N 554 TYR HA H N N 555 TYR HB2 H N N 556 TYR HB3 H N N 557 TYR HD1 H N N 558 TYR HD2 H N N 559 TYR HE1 H N N 560 TYR HE2 H N N 561 TYR HH H N N 562 TYR HXT H N N 563 VAL N N N N 564 VAL CA C N S 565 VAL C C N N 566 VAL O O N N 567 VAL CB C N N 568 VAL CG1 C N N 569 VAL CG2 C N N 570 VAL OXT O N N 571 VAL H H N N 572 VAL H2 H N N 573 VAL HA H N N 574 VAL HB H N N 575 VAL HG11 H N N 576 VAL HG12 H N N 577 VAL HG13 H N N 578 VAL HG21 H N N 579 VAL HG22 H N N 580 VAL HG23 H N N 581 VAL HXT H N N 582 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 GOL C1 O1 sing N N 287 GOL C1 C2 sing N N 288 GOL C1 H11 sing N N 289 GOL C1 H12 sing N N 290 GOL O1 HO1 sing N N 291 GOL C2 O2 sing N N 292 GOL C2 C3 sing N N 293 GOL C2 H2 sing N N 294 GOL O2 HO2 sing N N 295 GOL C3 O3 sing N N 296 GOL C3 H31 sing N N 297 GOL C3 H32 sing N N 298 GOL O3 HO3 sing N N 299 HIS N CA sing N N 300 HIS N H sing N N 301 HIS N H2 sing N N 302 HIS CA C sing N N 303 HIS CA CB sing N N 304 HIS CA HA sing N N 305 HIS C O doub N N 306 HIS C OXT sing N N 307 HIS CB CG sing N N 308 HIS CB HB2 sing N N 309 HIS CB HB3 sing N N 310 HIS CG ND1 sing Y N 311 HIS CG CD2 doub Y N 312 HIS ND1 CE1 doub Y N 313 HIS ND1 HD1 sing N N 314 HIS CD2 NE2 sing Y N 315 HIS CD2 HD2 sing N N 316 HIS CE1 NE2 sing Y N 317 HIS CE1 HE1 sing N N 318 HIS NE2 HE2 sing N N 319 HIS OXT HXT sing N N 320 HOH O H1 sing N N 321 HOH O H2 sing N N 322 ILE N CA sing N N 323 ILE N H sing N N 324 ILE N H2 sing N N 325 ILE CA C sing N N 326 ILE CA CB sing N N 327 ILE CA HA sing N N 328 ILE C O doub N N 329 ILE C OXT sing N N 330 ILE CB CG1 sing N N 331 ILE CB CG2 sing N N 332 ILE CB HB sing N N 333 ILE CG1 CD1 sing N N 334 ILE CG1 HG12 sing N N 335 ILE CG1 HG13 sing N N 336 ILE CG2 HG21 sing N N 337 ILE CG2 HG22 sing N N 338 ILE CG2 HG23 sing N N 339 ILE CD1 HD11 sing N N 340 ILE CD1 HD12 sing N N 341 ILE CD1 HD13 sing N N 342 ILE OXT HXT sing N N 343 LEU N CA sing N N 344 LEU N H sing N N 345 LEU N H2 sing N N 346 LEU CA C sing N N 347 LEU CA CB sing N N 348 LEU CA HA sing N N 349 LEU C O doub N N 350 LEU C OXT sing N N 351 LEU CB CG sing N N 352 LEU CB HB2 sing N N 353 LEU CB HB3 sing N N 354 LEU CG CD1 sing N N 355 LEU CG CD2 sing N N 356 LEU CG HG sing N N 357 LEU CD1 HD11 sing N N 358 LEU CD1 HD12 sing N N 359 LEU CD1 HD13 sing N N 360 LEU CD2 HD21 sing N N 361 LEU CD2 HD22 sing N N 362 LEU CD2 HD23 sing N N 363 LEU OXT HXT sing N N 364 LYS N CA sing N N 365 LYS N H sing N N 366 LYS N H2 sing N N 367 LYS CA C sing N N 368 LYS CA CB sing N N 369 LYS CA HA sing N N 370 LYS C O doub N N 371 LYS C OXT sing N N 372 LYS CB CG sing N N 373 LYS CB HB2 sing N N 374 LYS CB HB3 sing N N 375 LYS CG CD sing N N 376 LYS CG HG2 sing N N 377 LYS CG HG3 sing N N 378 LYS CD CE sing N N 379 LYS CD HD2 sing N N 380 LYS CD HD3 sing N N 381 LYS CE NZ sing N N 382 LYS CE HE2 sing N N 383 LYS CE HE3 sing N N 384 LYS NZ HZ1 sing N N 385 LYS NZ HZ2 sing N N 386 LYS NZ HZ3 sing N N 387 LYS OXT HXT sing N N 388 MET N CA sing N N 389 MET N H sing N N 390 MET N H2 sing N N 391 MET CA C sing N N 392 MET CA CB sing N N 393 MET CA HA sing N N 394 MET C O doub N N 395 MET C OXT sing N N 396 MET CB CG sing N N 397 MET CB HB2 sing N N 398 MET CB HB3 sing N N 399 MET CG SD sing N N 400 MET CG HG2 sing N N 401 MET CG HG3 sing N N 402 MET SD CE sing N N 403 MET CE HE1 sing N N 404 MET CE HE2 sing N N 405 MET CE HE3 sing N N 406 MET OXT HXT sing N N 407 ORP C1 O1 sing N N 408 ORP C1 C2 sing N N 409 ORP C1 O4 sing N N 410 ORP C1 H1 sing N N 411 ORP O1 HO1 sing N N 412 ORP C2 C3 sing N N 413 ORP C2 H21 sing N N 414 ORP C2 H22 sing N N 415 ORP C3 O3 sing N N 416 ORP C3 C4 sing N N 417 ORP C3 H3 sing N N 418 ORP O3 HO3 sing N N 419 ORP C4 O4 sing N N 420 ORP C4 C5 sing N N 421 ORP C4 H4 sing N N 422 ORP C5 O5 sing N N 423 ORP C5 H51 sing N N 424 ORP C5 H52 sing N N 425 ORP O5 P sing N N 426 ORP P O1P doub N N 427 ORP P O2P sing N N 428 ORP P O3P sing N N 429 ORP O2P HOP2 sing N N 430 ORP O3P HOP3 sing N N 431 PHE N CA sing N N 432 PHE N H sing N N 433 PHE N H2 sing N N 434 PHE CA C sing N N 435 PHE CA CB sing N N 436 PHE CA HA sing N N 437 PHE C O doub N N 438 PHE C OXT sing N N 439 PHE CB CG sing N N 440 PHE CB HB2 sing N N 441 PHE CB HB3 sing N N 442 PHE CG CD1 doub Y N 443 PHE CG CD2 sing Y N 444 PHE CD1 CE1 sing Y N 445 PHE CD1 HD1 sing N N 446 PHE CD2 CE2 doub Y N 447 PHE CD2 HD2 sing N N 448 PHE CE1 CZ doub Y N 449 PHE CE1 HE1 sing N N 450 PHE CE2 CZ sing Y N 451 PHE CE2 HE2 sing N N 452 PHE CZ HZ sing N N 453 PHE OXT HXT sing N N 454 PRO N CA sing N N 455 PRO N CD sing N N 456 PRO N H sing N N 457 PRO CA C sing N N 458 PRO CA CB sing N N 459 PRO CA HA sing N N 460 PRO C O doub N N 461 PRO C OXT sing N N 462 PRO CB CG sing N N 463 PRO CB HB2 sing N N 464 PRO CB HB3 sing N N 465 PRO CG CD sing N N 466 PRO CG HG2 sing N N 467 PRO CG HG3 sing N N 468 PRO CD HD2 sing N N 469 PRO CD HD3 sing N N 470 PRO OXT HXT sing N N 471 SER N CA sing N N 472 SER N H sing N N 473 SER N H2 sing N N 474 SER CA C sing N N 475 SER CA CB sing N N 476 SER CA HA sing N N 477 SER C O doub N N 478 SER C OXT sing N N 479 SER CB OG sing N N 480 SER CB HB2 sing N N 481 SER CB HB3 sing N N 482 SER OG HG sing N N 483 SER OXT HXT sing N N 484 THR N CA sing N N 485 THR N H sing N N 486 THR N H2 sing N N 487 THR CA C sing N N 488 THR CA CB sing N N 489 THR CA HA sing N N 490 THR C O doub N N 491 THR C OXT sing N N 492 THR CB OG1 sing N N 493 THR CB CG2 sing N N 494 THR CB HB sing N N 495 THR OG1 HG1 sing N N 496 THR CG2 HG21 sing N N 497 THR CG2 HG22 sing N N 498 THR CG2 HG23 sing N N 499 THR OXT HXT sing N N 500 TRP N CA sing N N 501 TRP N H sing N N 502 TRP N H2 sing N N 503 TRP CA C sing N N 504 TRP CA CB sing N N 505 TRP CA HA sing N N 506 TRP C O doub N N 507 TRP C OXT sing N N 508 TRP CB CG sing N N 509 TRP CB HB2 sing N N 510 TRP CB HB3 sing N N 511 TRP CG CD1 doub Y N 512 TRP CG CD2 sing Y N 513 TRP CD1 NE1 sing Y N 514 TRP CD1 HD1 sing N N 515 TRP CD2 CE2 doub Y N 516 TRP CD2 CE3 sing Y N 517 TRP NE1 CE2 sing Y N 518 TRP NE1 HE1 sing N N 519 TRP CE2 CZ2 sing Y N 520 TRP CE3 CZ3 doub Y N 521 TRP CE3 HE3 sing N N 522 TRP CZ2 CH2 doub Y N 523 TRP CZ2 HZ2 sing N N 524 TRP CZ3 CH2 sing Y N 525 TRP CZ3 HZ3 sing N N 526 TRP CH2 HH2 sing N N 527 TRP OXT HXT sing N N 528 TYR N CA sing N N 529 TYR N H sing N N 530 TYR N H2 sing N N 531 TYR CA C sing N N 532 TYR CA CB sing N N 533 TYR CA HA sing N N 534 TYR C O doub N N 535 TYR C OXT sing N N 536 TYR CB CG sing N N 537 TYR CB HB2 sing N N 538 TYR CB HB3 sing N N 539 TYR CG CD1 doub Y N 540 TYR CG CD2 sing Y N 541 TYR CD1 CE1 sing Y N 542 TYR CD1 HD1 sing N N 543 TYR CD2 CE2 doub Y N 544 TYR CD2 HD2 sing N N 545 TYR CE1 CZ doub Y N 546 TYR CE1 HE1 sing N N 547 TYR CE2 CZ sing Y N 548 TYR CE2 HE2 sing N N 549 TYR CZ OH sing N N 550 TYR OH HH sing N N 551 TYR OXT HXT sing N N 552 VAL N CA sing N N 553 VAL N H sing N N 554 VAL N H2 sing N N 555 VAL CA C sing N N 556 VAL CA CB sing N N 557 VAL CA HA sing N N 558 VAL C O doub N N 559 VAL C OXT sing N N 560 VAL CB CG1 sing N N 561 VAL CB CG2 sing N N 562 VAL CB HB sing N N 563 VAL CG1 HG11 sing N N 564 VAL CG1 HG12 sing N N 565 VAL CG1 HG13 sing N N 566 VAL CG2 HG21 sing N N 567 VAL CG2 HG22 sing N N 568 VAL CG2 HG23 sing N N 569 VAL OXT HXT sing N N 570 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7KZ1 'double helix' 7KZ1 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.035 -0.192 -0.010 -19.309 -5.754 3.507 1 C_DC1:DG12_D C 1 ? D 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.720 -0.371 0.185 -10.895 2.446 -0.356 2 C_DC2:DG11_D C 2 ? D 11 ? 19 1 1 B DA 3 1_555 C DT 10 1_555 -0.188 -0.150 0.260 1.417 -6.293 -2.459 3 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 B DG 4 1_555 C DC 9 1_555 0.238 -0.318 0.263 -1.521 -10.431 -2.834 4 C_DG4:DC9_D C 4 ? D 9 ? 19 1 1 B DC 5 1_555 C DG 8 1_555 0.202 -0.313 -0.312 2.567 -3.131 0.299 5 C_DC5:DG8_D C 5 ? D 8 ? 19 1 1 B DG 6 1_555 C DC 7 1_555 -0.358 -0.245 0.425 5.975 -14.142 1.697 6 C_DG6:DC7_D C 6 ? D 7 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.374 -0.087 -0.138 -12.341 -5.347 1.971 7 C_DG8:DC5_D C 8 ? D 5 ? 19 1 1 B DC 9 1_555 C DG 4 1_555 0.322 -0.113 0.261 0.084 -4.627 -0.632 8 C_DC9:DG4_D C 9 ? D 4 ? 19 1 1 B DA 10 1_555 C DT 3 1_555 0.026 -0.103 0.050 9.313 -10.869 -0.327 9 C_DA10:DT3_D C 10 ? D 3 ? 20 1 1 B DG 11 1_555 C DC 2 1_555 -0.048 -0.130 0.693 20.242 -9.234 4.503 10 C_DG11:DC2_D C 11 ? D 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.375 0.021 0.157 19.800 -22.086 -1.068 11 C_DC12:DG1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.479 -0.056 3.288 -0.792 7.457 31.963 -1.387 0.711 3.205 13.313 1.414 32.809 1 CC_DC1DC2:DG11DG12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DA 3 1_555 C DT 10 1_555 -0.187 0.915 3.072 -0.364 4.392 33.799 0.894 0.264 3.164 7.514 0.623 34.077 2 CC_DC2DA3:DT10DG11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 B DA 3 1_555 C DT 10 1_555 B DG 4 1_555 C DC 9 1_555 -0.482 -0.264 3.377 -0.967 1.352 36.425 -0.616 0.631 3.377 2.162 1.546 36.462 3 CC_DA3DG4:DC9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DC 5 1_555 C DG 8 1_555 1.020 -0.030 3.230 7.613 -1.254 34.540 0.140 -0.533 3.371 -2.080 -12.626 35.366 4 CC_DG4DC5:DG8DC9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DG 6 1_555 C DC 7 1_555 -0.638 0.820 3.344 -7.880 3.209 34.626 0.848 -0.167 3.461 5.293 12.998 35.625 5 CC_DC5DG6:DC7DG8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 B DG 8 1_555 C DC 5 1_555 B DC 9 1_555 C DG 4 1_555 -0.348 -0.107 3.058 -3.548 3.596 26.315 -1.106 -0.113 3.036 7.806 7.703 26.787 6 CC_DG8DC9:DG4DC5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 B DC 9 1_555 C DG 4 1_555 B DA 10 1_555 C DT 3 1_555 0.280 0.507 3.114 4.194 4.758 35.373 0.164 0.126 3.164 7.753 -6.834 35.920 7 CC_DC9DA10:DT3DG4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 B DA 10 1_555 C DT 3 1_555 B DG 11 1_555 C DC 2 1_555 0.838 -0.164 3.026 -5.142 5.768 30.659 -1.264 -2.398 2.777 10.696 9.537 31.595 8 CC_DA10DG11:DC2DT3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 -0.538 -0.478 3.240 0.931 2.871 36.226 -1.160 0.990 3.179 4.607 -1.494 36.348 9 CC_DG11DC12:DG1DC2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01-GM072711, R35-GM136225' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ORP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ORP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 1,2-ETHANEDIOL EDO 6 'SODIUM ION' NA 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DK9 _pdbx_initial_refinement_model.details 'PDB entry 4DK9' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #