HEADER TOXIN 10-DEC-20 7KZ7 TITLE CRYSTALS STRUCTURE OF THE MUTATED PROTEASE DOMAIN OF BOTULINUM TITLE 2 NEUROTOXIN X (X4130B1). COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE X; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BONT/X,BONTOXILYSIN-X; COMPND 5 EC: 3.4.24.69; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: CBB2_0680; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NEUROTOXIN X, PROTEASE DOMAIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.R.BLUM,H.LIU,M.S.PACKER,X.XIONG,P.G.LEE,S.ZHANG,M.RICHTER, AUTHOR 2 G.MINASOV,K.J.F.SATCHELL,M.DONG,D.R.LIU,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 18-OCT-23 7KZ7 1 REMARK REVDAT 2 15-DEC-21 7KZ7 1 JRNL REVDAT 1 23-DEC-20 7KZ7 0 JRNL AUTH T.R.BLUM,H.LIU,M.S.PACKER,X.XIONG,P.G.LEE,S.ZHANG,M.RICHTER, JRNL AUTH 2 G.MINASOV,K.J.F.SATCHELL,M.DONG,D.R.LIU JRNL TITL PHAGE-ASSISTED EVOLUTION OF BOTULINUM NEUROTOXIN PROTEASES JRNL TITL 2 WITH REPROGRAMMED SPECIFICITY. JRNL REF SCIENCE V. 371 803 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33602850 JRNL DOI 10.1126/SCIENCE.ABF5972 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.97000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3578 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3433 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4849 ; 1.353 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7931 ; 0.356 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 3.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;28.166 ;24.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 634 ; 9.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4081 ; 0.054 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 807 ; 0.048 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4667 -15.4590 -26.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.0322 REMARK 3 T33: 0.0337 T12: 0.0050 REMARK 3 T13: 0.0001 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.7493 L22: 1.2188 REMARK 3 L33: 1.1347 L12: 0.4395 REMARK 3 L13: -0.4554 L23: -0.1953 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0297 S13: -0.0537 REMARK 3 S21: 0.0268 S22: -0.0142 S23: -0.0916 REMARK 3 S31: 0.0106 S32: 0.1218 S33: -0.0243 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1929 -7.6762 -22.5592 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.0051 REMARK 3 T33: 0.0191 T12: -0.0025 REMARK 3 T13: 0.0065 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3348 L22: 0.3942 REMARK 3 L33: 0.4365 L12: 0.2177 REMARK 3 L13: 0.2621 L23: 0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0091 S13: -0.0456 REMARK 3 S21: 0.0585 S22: -0.0061 S23: -0.0307 REMARK 3 S31: 0.0299 S32: 0.0281 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8746 5.8458 -28.3558 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0096 REMARK 3 T33: 0.0199 T12: 0.0080 REMARK 3 T13: 0.0120 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2844 L22: 0.7950 REMARK 3 L33: 0.6669 L12: -0.0480 REMARK 3 L13: 0.1225 L23: 0.2305 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0255 S13: 0.0306 REMARK 3 S21: -0.0003 S22: -0.0396 S23: 0.0602 REMARK 3 S31: -0.0598 S32: -0.0666 S33: 0.0443 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 366 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1564 -0.1560 -7.7709 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0639 REMARK 3 T33: 0.0419 T12: -0.0163 REMARK 3 T13: -0.0639 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.7004 L22: 1.8949 REMARK 3 L33: 1.6464 L12: 0.2506 REMARK 3 L13: -0.1215 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.0509 S13: -0.0398 REMARK 3 S21: 0.3712 S22: -0.0175 S23: -0.2638 REMARK 3 S31: 0.0046 S32: 0.1586 S33: -0.0540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7KZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : 0.77900 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10MG/ML, 20 MM TRIS, PH 7.5, REMARK 280 200 MM NACL; SCREEN: 0.1 M BIS-TRIS, PH 6.5, 20% PEG 5000; CRYO: REMARK 280 10% GLYCEROL, 0.1 M BIS-TRIS, PH 6.5, 20% PEG 5000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.96750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.77850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.38750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.77850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.96750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.38750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 425 REMARK 465 ASN A 426 REMARK 465 GLY A 427 REMARK 465 LEU A 428 REMARK 465 LEU A 429 REMARK 465 TYR A 430 REMARK 465 ASN A 431 REMARK 465 ALA A 432 REMARK 465 ILE A 433 REMARK 465 TYR A 434 REMARK 465 ARG A 435 REMARK 465 ASN A 436 REMARK 465 SER A 437 REMARK 465 LYS A 438 REMARK 465 ASN A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 51 66.22 -68.49 REMARK 500 ASN A 55 39.56 -147.19 REMARK 500 ASN A 55 30.21 -144.37 REMARK 500 ASN A 78 94.31 -167.39 REMARK 500 ASN A 142 -122.86 65.32 REMARK 500 ASN A 201 75.19 -109.85 REMARK 500 ASN A 260 75.91 -111.19 REMARK 500 ASN A 327 39.77 -143.73 REMARK 500 ASN A 327 44.68 -141.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 HIS A 231 NE2 100.1 REMARK 620 3 GLU A 266 OE1 98.6 97.9 REMARK 620 4 GLU A 266 OE2 153.1 87.2 54.6 REMARK 620 5 HOH A 624 O 96.7 156.0 96.3 85.5 REMARK 620 6 HOH A 869 O 114.1 91.9 143.5 91.3 65.5 REMARK 620 N 1 2 3 4 5 DBREF 7KZ7 A 1 439 UNP P0DPK1 BXX_CLOBO 1 439 SEQADV 7KZ7 ASP A 143 UNP P0DPK1 ASN 143 ENGINEERED MUTATION SEQADV 7KZ7 THR A 148 UNP P0DPK1 ASN 148 ENGINEERED MUTATION SEQADV 7KZ7 GLU A 166 UNP P0DPK1 ALA 166 ENGINEERED MUTATION SEQADV 7KZ7 ILE A 167 UNP P0DPK1 THR 167 ENGINEERED MUTATION SEQADV 7KZ7 ASN A 314 UNP P0DPK1 TYR 314 ENGINEERED MUTATION SEQADV 7KZ7 ILE A 364 UNP P0DPK1 LEU 364 ENGINEERED MUTATION SEQADV 7KZ7 HIS A 440 UNP P0DPK1 EXPRESSION TAG SEQADV 7KZ7 HIS A 441 UNP P0DPK1 EXPRESSION TAG SEQADV 7KZ7 HIS A 442 UNP P0DPK1 EXPRESSION TAG SEQADV 7KZ7 HIS A 443 UNP P0DPK1 EXPRESSION TAG SEQADV 7KZ7 HIS A 444 UNP P0DPK1 EXPRESSION TAG SEQADV 7KZ7 HIS A 445 UNP P0DPK1 EXPRESSION TAG SEQRES 1 A 445 MET LYS LEU GLU ILE ASN LYS PHE ASN TYR ASN ASP PRO SEQRES 2 A 445 ILE ASP GLY ILE ASN VAL ILE THR MET ARG PRO PRO ARG SEQRES 3 A 445 HIS SER ASP LYS ILE ASN LYS GLY LYS GLY PRO PHE LYS SEQRES 4 A 445 ALA PHE GLN VAL ILE LYS ASN ILE TRP ILE VAL PRO GLU SEQRES 5 A 445 ARG TYR ASN PHE THR ASN ASN THR ASN ASP LEU ASN ILE SEQRES 6 A 445 PRO SER GLU PRO ILE MET GLU ALA ASP ALA ILE TYR ASN SEQRES 7 A 445 PRO ASN TYR LEU ASN THR PRO SER GLU LYS ASP GLU PHE SEQRES 8 A 445 LEU GLN GLY VAL ILE LYS VAL LEU GLU ARG ILE LYS SER SEQRES 9 A 445 LYS PRO GLU GLY GLU LYS LEU LEU GLU LEU ILE SER SER SEQRES 10 A 445 SER ILE PRO LEU PRO LEU VAL SER ASN GLY ALA LEU THR SEQRES 11 A 445 LEU SER ASP ASN GLU THR ILE ALA TYR GLN GLU ASN ASP SEQRES 12 A 445 ASN ILE VAL SER THR LEU GLN ALA ASN LEU VAL ILE TYR SEQRES 13 A 445 GLY PRO GLY PRO ASP ILE ALA ASN ASN GLU ILE TYR GLY SEQRES 14 A 445 LEU TYR SER THR PRO ILE SER ASN GLY GLU GLY THR LEU SEQRES 15 A 445 SER GLU VAL SER PHE SER PRO PHE TYR LEU LYS PRO PHE SEQRES 16 A 445 ASP GLU SER TYR GLY ASN TYR ARG SER LEU VAL ASN ILE SEQRES 17 A 445 VAL ASN LYS PHE VAL LYS ARG GLU PHE ALA PRO ASP PRO SEQRES 18 A 445 ALA SER THR LEU MET HIS GLU LEU VAL HIS VAL THR HIS SEQRES 19 A 445 ASN LEU TYR GLY ILE SER ASN ARG ASN PHE TYR TYR ASN SEQRES 20 A 445 PHE ASP THR GLY LYS ILE GLU THR SER ARG GLN GLN ASN SEQRES 21 A 445 SER LEU ILE PHE GLU GLU LEU LEU THR PHE GLY GLY ILE SEQRES 22 A 445 ASP SER LYS ALA ILE SER SER LEU ILE ILE LYS LYS ILE SEQRES 23 A 445 ILE GLU THR ALA LYS ASN ASN TYR THR THR LEU ILE SER SEQRES 24 A 445 GLU ARG LEU ASN THR VAL THR VAL GLU ASN ASP LEU LEU SEQRES 25 A 445 LYS ASN ILE LYS ASN LYS ILE PRO VAL GLN GLY ARG LEU SEQRES 26 A 445 GLY ASN PHE LYS LEU ASP THR ALA GLU PHE GLU LYS LYS SEQRES 27 A 445 LEU ASN THR ILE LEU PHE VAL LEU ASN GLU SER ASN LEU SEQRES 28 A 445 ALA GLN ARG PHE SER ILE LEU VAL ARG LYS HIS TYR ILE SEQRES 29 A 445 LYS GLU ARG PRO ILE ASP PRO ILE TYR VAL ASN ILE LEU SEQRES 30 A 445 ASP ASP ASN SER TYR SER THR LEU GLU GLY PHE ASN ILE SEQRES 31 A 445 SER SER GLN GLY SER ASN ASP PHE GLN GLY GLN LEU LEU SEQRES 32 A 445 GLU SER SER TYR PHE GLU LYS ILE GLU SER ASN ALA LEU SEQRES 33 A 445 ARG ALA PHE ILE LYS ILE CYS PRO ARG ASN GLY LEU LEU SEQRES 34 A 445 TYR ASN ALA ILE TYR ARG ASN SER LYS ASN HIS HIS HIS SEQRES 35 A 445 HIS HIS HIS HET ZN A 501 1 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET GOL A 509 6 HET GOL A 510 6 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *407(H2 O) HELIX 1 AA1 ASP A 29 LYS A 33 5 5 HELIX 2 AA2 THR A 57 ASN A 61 5 5 HELIX 3 AA3 THR A 84 SER A 104 1 21 HELIX 4 AA4 LYS A 105 SER A 118 1 14 HELIX 5 AA5 ASP A 220 TYR A 237 1 18 HELIX 6 AA6 PHE A 264 GLY A 271 1 8 HELIX 7 AA7 GLY A 272 LYS A 276 5 5 HELIX 8 AA8 SER A 279 ARG A 301 1 23 HELIX 9 AA9 LEU A 302 VAL A 305 5 4 HELIX 10 AB1 ASN A 309 ILE A 319 1 11 HELIX 11 AB2 ASP A 331 VAL A 345 1 15 HELIX 12 AB3 ASN A 347 PHE A 355 1 9 HELIX 13 AB4 ILE A 390 GLY A 394 5 5 HELIX 14 AB5 PHE A 398 LEU A 402 5 5 SHEET 1 AA1 8 ASN A 144 GLN A 150 0 SHEET 2 AA1 8 THR A 136 GLU A 141 -1 N TYR A 139 O SER A 147 SHEET 3 AA1 8 VAL A 19 ARG A 23 -1 N THR A 21 O GLN A 140 SHEET 4 AA1 8 PHE A 38 ILE A 44 -1 O PHE A 38 N MET A 22 SHEET 5 AA1 8 ILE A 47 ARG A 53 -1 O ILE A 47 N ILE A 44 SHEET 6 AA1 8 LEU A 153 GLY A 157 1 O ILE A 155 N TRP A 48 SHEET 7 AA1 8 SER A 183 SER A 186 1 O VAL A 185 N TYR A 156 SHEET 8 AA1 8 GLU A 166 GLY A 169 -1 N GLU A 166 O SER A 186 SHEET 1 AA2 2 LEU A 123 SER A 125 0 SHEET 2 AA2 2 ALA A 128 THR A 130 -1 O ALA A 128 N SER A 125 SHEET 1 AA3 4 TYR A 191 LEU A 192 0 SHEET 2 AA3 4 ILE A 372 TYR A 373 -1 O ILE A 372 N LEU A 192 SHEET 3 AA3 4 GLU A 409 SER A 413 -1 O GLU A 409 N TYR A 373 SHEET 4 AA3 4 PHE A 419 CYS A 423 -1 O CYS A 423 N LYS A 410 SHEET 1 AA4 2 PHE A 195 TYR A 199 0 SHEET 2 AA4 2 VAL A 213 PHE A 217 -1 O PHE A 217 N PHE A 195 SHEET 1 AA5 3 ILE A 253 GLU A 254 0 SHEET 2 AA5 3 TYR A 245 ASN A 247 -1 N TYR A 245 O GLU A 254 SHEET 3 AA5 3 SER A 261 ILE A 263 -1 O LEU A 262 N TYR A 246 SHEET 1 AA6 2 VAL A 321 GLN A 322 0 SHEET 2 AA6 2 LYS A 329 LEU A 330 -1 O LYS A 329 N GLN A 322 LINK NE2 HIS A 227 ZN ZN A 501 1555 1555 2.09 LINK NE2 HIS A 231 ZN ZN A 501 1555 1555 2.12 LINK OE1 GLU A 266 ZN ZN A 501 1555 1555 2.03 LINK OE2 GLU A 266 ZN ZN A 501 1555 1555 2.60 LINK ZN ZN A 501 O HOH A 624 1555 1555 2.19 LINK ZN ZN A 501 O HOH A 869 1555 1555 2.43 CISPEP 1 GLY A 36 PRO A 37 0 1.95 CRYST1 59.935 86.775 93.557 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010689 0.00000