HEADER PEPTIDE NUCLEIC ACID/DNA 10-DEC-20 7KZL TITLE CYCLOPENTANE PEPTIDE NUCLEIC ACID IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*TP*CP*AP*CP*AP*TP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: XDJ-XDD-XDY-XDJ-XDY-XDJ-XDD-XDY-XDD-XDV; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS PEPTIDE NUCLEIC ACID, PNA, PEPTIDE NUCLEIC ACID-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.BOTOS,D.H.APPELLA REVDAT 5 03-APR-24 7KZL 1 REMARK REVDAT 4 15-NOV-23 7KZL 1 LINK ATOM REVDAT 3 03-FEB-21 7KZL 1 JRNL REVDAT 2 20-JAN-21 7KZL 1 JRNL REVDAT 1 23-DEC-20 7KZL 0 JRNL AUTH H.ZHENG,I.BOTOS,V.CLAUSSE,H.NIKOLAYEVSKIY,E.E.RASTEDE, JRNL AUTH 2 M.F.FOUZ,S.J.MAZUR,D.H.APPELLA JRNL TITL CONFORMATIONAL CONSTRAINTS OF CYCLOPENTANE PEPTIDE NUCLEIC JRNL TITL 2 ACIDS FACILITATE TUNABLE BINDING TO DNA. JRNL REF NUCLEIC ACIDS RES. V. 49 713 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33406227 JRNL DOI 10.1093/NAR/GKAA1249 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0900 - 2.8000 0.98 2667 123 0.1687 0.1530 REMARK 3 2 2.8000 - 2.2200 1.00 2674 167 0.1797 0.2285 REMARK 3 3 2.2200 - 1.9400 1.00 2700 142 0.1756 0.1922 REMARK 3 4 1.9400 - 1.7600 1.00 2687 151 0.1634 0.1984 REMARK 3 5 1.7600 - 1.6400 1.00 2710 124 0.1577 0.1554 REMARK 3 6 1.6400 - 1.5400 1.00 2722 120 0.1592 0.1852 REMARK 3 7 1.5400 - 1.4600 1.00 2699 134 0.1738 0.2096 REMARK 3 8 1.4600 - 1.4000 1.00 2660 161 0.1866 0.2264 REMARK 3 9 1.4000 - 1.3400 1.00 2733 134 0.1936 0.2353 REMARK 3 10 1.3400 - 1.3000 0.98 2597 164 0.1996 0.2106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.096 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 443 REMARK 3 ANGLE : 2.358 623 REMARK 3 CHIRALITY : 0.062 53 REMARK 3 PLANARITY : 0.019 28 REMARK 3 DIHEDRAL : 38.568 143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000245291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 32.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: I-SAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 15% ETHANOL, 200MM ZINC REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.81650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.35200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.35200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.72475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.35200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.35200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.90825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.35200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.35200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.72475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.35200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.35200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.90825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.81650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT A 1 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 C6 DT A 1 N1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 C4 - C5 - C6 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT A 1 N3 - C4 - O4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 XDJ B 1 CA - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 XDD B 2 CA - C - N ANGL. DEV. = -21.2 DEGREES REMARK 500 XDY B 3 CA - C - N ANGL. DEV. = -18.1 DEGREES REMARK 500 XDJ B 4 CA - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 XDY B 5 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 XDJ B 6 CA - C - N ANGL. DEV. = -19.2 DEGREES REMARK 500 XDD B 7 CA - C - N ANGL. DEV. = -20.1 DEGREES REMARK 500 XDY B 8 CA - C - N ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 XDJ B 6 XDD B 7 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 XDY B 3 11.05 REMARK 500 XDJ B 4 13.74 REMARK 500 XDJ B 6 15.29 REMARK 500 XDY B 8 10.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 5 N7 REMARK 620 2 HOH A 228 O 94.4 REMARK 620 3 HOH A 232 O 113.4 109.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 6 OP1 REMARK 620 2 HOH A 234 O 46.9 REMARK 620 3 XDJ B 6 N15 42.5 9.6 REMARK 620 4 HOH B 211 O 49.3 10.9 6.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 238 O REMARK 620 2 HOH B 235 O 99.9 REMARK 620 3 HOH B 238 O 132.8 105.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 223 O REMARK 620 2 XDJ B 1 N15 99.1 REMARK 620 3 HOH B 202 O 82.6 93.7 REMARK 620 4 HOH B 247 O 130.0 127.9 78.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 XDJ B 1 N15 REMARK 620 2 HOH B 202 O 93.7 REMARK 620 3 HOH B 204 O 93.4 80.8 REMARK 620 4 HOH B 229 O 96.7 168.1 92.8 REMARK 620 5 HOH B 247 O 173.0 83.8 92.7 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MOH B 101 O REMARK 620 2 MOH B 102 O 99.2 REMARK 620 3 MOH B 103 O 111.1 113.3 REMARK 620 4 EDO B 104 O2 79.7 129.4 113.9 REMARK 620 N 1 2 3 DBREF 7KZL A 1 9 PDB 7KZL 7KZL 1 9 DBREF 7KZL B 1 10 PDB 7KZL 7KZL 1 10 SEQRES 1 A 9 DT DA DT DC DA DC DA DT DC SEQRES 1 B 10 XDJ XDD XDY XDJ XDY XDJ XDD XDY XDD XDV HET XDJ B 1 41 HET XDD B 2 40 HET XDY B 3 40 HET XDJ B 4 41 HET XDY B 5 39 HET XDJ B 6 41 HET XDD B 7 40 HET XDY B 8 40 HET XDD B 9 39 HET XDV B 10 24 HET IOD A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET MOH B 101 2 HET MOH B 102 2 HET MOH B 103 2 HET EDO B 104 4 HET ZN B 105 1 HET ZN B 106 1 HET ZN B 107 1 HET ZN B 108 1 HETNAM XDJ N-[(1S,2S)-2-AMINOCYCLOPENTYL]-N-[(2-AMINO-6-OXO-1,6- HETNAM 2 XDJ DIHYDRO-9H-PURIN-9-YL)ACETYL]GLYCINE HETNAM XDD N-[(1S,2S)-2-AMINOCYCLOPENTYL]-N-[(6-AMINO-9H-PURIN-9- HETNAM 2 XDD YL)ACETYL]GLYCINE HETNAM XDY N-[(1S,2S)-2-AMINOCYCLOPENTYL]-N-[(5-METHYL-2,4-DIOXO- HETNAM 2 XDY 3,4-DIHYDROPYRIMIDIN-1(2H)-YL)ACETYL]GLYCINE HETNAM XDV 2-[2-(2-AMINOETHOXY)ETHOXY]ACETAMIDE HETNAM IOD IODIDE ION HETNAM ZN ZINC ION HETNAM MOH METHANOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 XDJ 3(C14 H19 N7 O4) FORMUL 2 XDD 3(C14 H19 N7 O3) FORMUL 2 XDY 3(C14 H20 N4 O5) FORMUL 2 XDV C6 H14 N2 O3 FORMUL 3 IOD I 1- FORMUL 4 ZN 6(ZN 2+) FORMUL 6 MOH 3(C H4 O) FORMUL 9 EDO C2 H6 O2 FORMUL 14 HOH *97(H2 O) LINK C XDJ B 1 N XDD B 2 1555 1555 1.40 LINK C XDD B 2 N XDY B 3 1555 1555 1.43 LINK C XDY B 3 N XDJ B 4 1555 1555 1.43 LINK C XDJ B 4 N XDY B 5 1555 1555 1.43 LINK C XDY B 5 N XDJ B 6 1555 1555 1.43 LINK C XDJ B 6 N XDD B 7 1555 1555 1.41 LINK C XDD B 7 N XDY B 8 1555 1555 1.40 LINK C XDY B 8 N XDD B 9 1555 1555 1.43 LINK C XDD B 9 N01 XDV B 10 1555 1555 1.43 LINK N7 DA A 5 ZN ZN A 102 1555 1555 2.32 LINK OP1 DC A 6 ZN ZN B 105 1555 4445 1.97 LINK ZN ZN A 102 O HOH A 228 1555 1555 1.92 LINK ZN ZN A 102 O HOH A 232 1555 1555 2.15 LINK ZN ZN A 103 O HOH A 238 1555 1555 2.21 LINK ZN ZN A 103 O HOH B 235 1555 4444 2.58 LINK ZN ZN A 103 O HOH B 238 1555 4444 2.30 LINK O HOH A 223 ZN ZN B 108 5354 1555 2.33 LINK O HOH A 234 ZN ZN B 105 3454 1555 2.12 LINK N15 XDJ B 1 ZN ZN B 106 1555 1555 2.13 LINK N15 XDJ B 1 ZN ZN B 108 1555 1555 2.26 LINK N15 XDJ B 6 ZN ZN B 105 1555 1555 2.06 LINK O MOH B 101 ZN ZN B 107 1555 1555 2.42 LINK O MOH B 102 ZN ZN B 107 1555 1555 2.07 LINK O MOH B 103 ZN ZN B 107 1555 1555 2.10 LINK O2 EDO B 104 ZN ZN B 107 1555 1555 2.16 LINK ZN ZN B 105 O HOH B 211 1555 1555 2.06 LINK ZN ZN B 106 O HOH B 202 1555 1555 2.07 LINK ZN ZN B 106 O HOH B 204 1555 1555 2.09 LINK ZN ZN B 106 O HOH B 229 1555 1555 1.96 LINK ZN ZN B 106 O HOH B 247 1555 1555 2.07 LINK ZN ZN B 108 O HOH B 202 1555 1555 1.92 LINK ZN ZN B 108 O HOH B 247 1555 1555 2.40 CRYST1 54.704 54.704 39.633 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025231 0.00000