data_7L0Z # _entry.id 7L0Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7L0Z pdb_00007l0z 10.2210/pdb7l0z/pdb WWPDB D_1000253536 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7L0Z _pdbx_database_status.recvd_initial_deposition_date 2020-12-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Truong, L.' 1 ? 'Trachman, R.J.' 2 ? ;Ferre-D'Amare, A.R. ; 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 433 _citation.page_last 444 _citation.title 'Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.078220.120 _citation.pdbx_database_id_PubMed 33376189 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeng, S.C.Y.' 1 ? primary 'Trachman III, R.J.' 2 ? primary 'Weissenboeck, F.' 3 ? primary 'Truong, L.' 4 ? primary 'Link, K.A.' 5 ? primary 'Jepsen, M.D.E.' 6 ? primary 'Knutson, J.R.' 7 ? primary 'Andersen, E.S.' 8 ? primary ;Ferre-D'Amare, A.R. ; 9 ? primary 'Unrau, P.J.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 91.364 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7L0Z _cell.details ? _cell.formula_units_Z ? _cell.length_a 150.564 _cell.length_a_esd ? _cell.length_b 48.692 _cell.length_b_esd ? _cell.length_c 30.612 _cell.length_c_esd ? _cell.volume 224361.009 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (69-MER)' 22373.242 1 ? ? ? ? 2 non-polymer syn '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 320.215 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 3 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 7 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 8 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAGUACGGUGAGGGUCGGGUCCAGUAGGUACGCCUACUGUUGAGUAGAGUGUGGGCUCCGUACUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAGUACGGUGAGGGUCGGGUCCAGUAGGUACGCCUACUGUUGAGUAGAGUGUGGGCUCCGUACUCCC _entity_poly.pdbx_strand_id G _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 C n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 A n 1 14 G n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 G n 1 20 G n 1 21 G n 1 22 U n 1 23 C n 1 24 C n 1 25 A n 1 26 G n 1 27 U n 1 28 A n 1 29 G n 1 30 G n 1 31 U n 1 32 A n 1 33 C n 1 34 G n 1 35 C n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 U n 1 43 U n 1 44 G n 1 45 A n 1 46 G n 1 47 U n 1 48 A n 1 49 G n 1 50 A n 1 51 G n 1 52 U n 1 53 G n 1 54 U n 1 55 G n 1 56 G n 1 57 G n 1 58 C n 1 59 U n 1 60 C n 1 61 C n 1 62 G n 1 63 U n 1 64 A n 1 65 C n 1 66 U n 1 67 C n 1 68 C n 1 69 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 69 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7L0Z _struct_ref.pdbx_db_accession 7L0Z _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7L0Z _struct_ref_seq.pdbx_strand_id G _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 69 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7L0Z _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 69 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 69 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2ZY non-polymer . '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' ? 'C13 H9 F5 N2 O2' 320.215 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7L0Z _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40 mM Tris-HCl pH 7.5, 100 mM KCl, 1 mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.105 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 46.31 _reflns.entry_id 7L0Z _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.01 _reflns.d_resolution_low 75.26 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14648 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1167 _reflns_shell.percent_possible_all 92.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.627 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 66.07 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7L0Z _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.10 _refine.ls_d_res_low 75.26 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11686 _refine.ls_number_reflns_R_free 1293 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.76 _refine.ls_percent_reflns_R_free 9.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1996 _refine.ls_R_factor_R_free 0.2324 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1959 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5OB3 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.8783 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2582 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 75.26 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1612 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1483 _refine_hist.pdbx_number_atoms_ligand 75 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0061 ? 1724 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1182 ? 2665 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0506 ? 345 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0068 ? 71 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.2425 ? 858 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.10 2.18 . . 146 1308 98.91 . . . 0.3300 . 0.2990 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.18 2.28 . . 145 1259 99.29 . . . 0.2831 . 0.2669 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.28 2.40 . . 141 1302 99.18 . . . 0.3028 . 0.2584 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.40 2.55 . . 147 1309 98.91 . . . 0.2505 . 0.2374 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.55 2.75 . . 139 1267 98.53 . . . 0.2850 . 0.2490 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.75 3.03 . . 140 1298 98.97 . . . 0.3223 . 0.2642 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.03 3.47 . . 138 1276 97.79 . . . 0.2656 . 0.2104 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.47 4.37 . . 150 1322 99.26 . . . 0.2066 . 0.1784 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.37 75.26 . . 147 1321 98.19 . . . 0.1720 . 0.1391 . . . . . . . . . . . # _struct.entry_id 7L0Z _struct.title 'Spinach variant bound to DFHBI-1T' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7L0Z _struct_keywords.text 'fluorescent, aptamer, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 7 ? L N N 7 ? M N N 8 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 15 O6 ? ? ? 1_555 K K . K ? ? G G 15 G K 110 1_555 ? ? ? ? ? ? ? 3.245 ? ? metalc2 metalc ? ? A G 15 O6 ? ? ? 1_555 L K . K ? ? G G 15 G K 111 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc3 metalc ? ? A G 16 O6 ? ? ? 1_555 K K . K ? ? G G 16 G K 110 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc4 metalc ? ? A G 19 OP2 ? ? ? 1_555 I NA . NA ? ? G G 19 G NA 108 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc5 metalc ? ? A G 19 O6 ? ? ? 1_555 K K . K ? ? G G 19 G K 110 1_555 ? ? ? ? ? ? ? 3.275 ? ? metalc6 metalc ? ? A G 19 O6 ? ? ? 1_555 L K . K ? ? G G 19 G K 111 1_555 ? ? ? ? ? ? ? 2.988 ? ? metalc7 metalc ? ? A G 20 O6 ? ? ? 1_555 K K . K ? ? G G 20 G K 110 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc8 metalc ? ? A A 32 "O2'" ? ? ? 1_555 J NA . NA ? ? G A 32 G NA 109 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc9 metalc ? ? A A 32 "O2'" ? ? ? 1_555 J NA . NA ? ? G A 32 G NA 109 2_555 ? ? ? ? ? ? ? 2.446 ? ? metalc10 metalc ? ? A G 46 O6 ? ? ? 1_555 K K . K ? ? G G 46 G K 110 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc11 metalc ? ? A G 49 O6 ? ? ? 1_555 K K . K ? ? G G 49 G K 110 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc12 metalc ? ? A G 49 O6 ? ? ? 1_555 L K . K ? ? G G 49 G K 111 1_555 ? ? ? ? ? ? ? 2.925 ? ? metalc13 metalc ? ? A G 51 O6 ? ? ? 1_555 K K . K ? ? G G 51 G K 110 1_555 ? ? ? ? ? ? ? 2.708 ? ? metalc14 metalc ? ? A G 53 O6 ? ? ? 1_555 K K . K ? ? G G 53 G K 110 1_555 ? ? ? ? ? ? ? 3.370 ? ? metalc15 metalc ? ? A G 53 O6 ? ? ? 1_555 L K . K ? ? G G 53 G K 111 1_555 ? ? ? ? ? ? ? 3.005 ? ? metalc16 metalc ? ? A U 54 "O2'" ? ? ? 1_555 L K . K ? ? G U 54 G K 111 1_555 ? ? ? ? ? ? ? 3.106 ? ? metalc17 metalc ? ? A U 54 O2 ? ? ? 1_555 L K . K ? ? G U 54 G K 111 1_555 ? ? ? ? ? ? ? 2.828 ? ? metalc18 metalc ? ? A G 55 O6 ? ? ? 1_555 L K . K ? ? G G 55 G K 111 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 G PO4 . O1 ? ? G MG 105 G PO4 106 1_555 ? ? ? ? ? ? ? 2.955 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 G PO4 . O1 ? ? G MG 105 G PO4 106 2_456 ? ? ? ? ? ? ? 2.955 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H PO4 . O1 ? ? G MG 105 G PO4 107 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 H PO4 . O4 ? ? G MG 105 G PO4 107 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H PO4 . O1 ? ? G MG 105 G PO4 107 2_456 ? ? ? ? ? ? ? 2.484 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 H PO4 . O4 ? ? G MG 105 G PO4 107 2_456 ? ? ? ? ? ? ? 2.622 ? ? metalc25 metalc ? ? I NA . NA ? ? ? 1_555 M HOH . O ? ? G NA 108 G HOH 211 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc26 metalc ? ? I NA . NA ? ? ? 1_555 M HOH . O ? ? G NA 108 G HOH 235 1_555 ? ? ? ? ? ? ? 3.092 ? ? metalc27 metalc ? ? L K . K ? ? ? 1_555 M HOH . O ? ? G K 111 G HOH 234 1_555 ? ? ? ? ? ? ? 2.980 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 69 N3 ? ? G G 1 G C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 69 O2 ? ? G G 1 G C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 69 N4 ? ? G G 1 G C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 68 N3 ? ? G G 2 G C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 68 O2 ? ? G G 2 G C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 68 N4 ? ? G G 2 G C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 67 N3 ? ? G G 3 G C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 67 O2 ? ? G G 3 G C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 67 N4 ? ? G G 3 G C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 66 N3 ? ? G A 4 G U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 66 O4 ? ? G A 4 G U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 65 N3 ? ? G G 5 G C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 65 O2 ? ? G G 5 G C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 65 N4 ? ? G G 5 G C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 64 N1 ? ? G U 6 G A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 64 N6 ? ? G U 6 G A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 63 N3 ? ? G A 7 G U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 63 O4 ? ? G A 7 G U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 62 N1 ? ? G C 8 G G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 62 O6 ? ? G C 8 G G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 62 N2 ? ? G C 8 G G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 61 N3 ? ? G G 9 G C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 61 O2 ? ? G G 9 G C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 61 N4 ? ? G G 9 G C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 60 N3 ? ? G G 10 G C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 60 O2 ? ? G G 10 G C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 60 N4 ? ? G G 10 G C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 59 O4 ? ? G U 11 G U 59 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog29 hydrog ? ? A U 11 O2 ? ? ? 1_555 A U 59 N3 ? ? G U 11 G U 59 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog30 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 58 N3 ? ? G G 12 G C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 58 O2 ? ? G G 12 G C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 58 N4 ? ? G G 12 G C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 13 N1 ? ? ? 1_555 A G 57 N1 ? ? G A 13 G G 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A A 13 N6 ? ? ? 1_555 A G 57 O6 ? ? G A 13 G G 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? A G 14 N2 ? ? ? 1_555 A G 56 O6 ? ? G G 14 G G 56 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 15 N1 ? ? ? 1_555 A G 19 O6 ? ? G G 15 G G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 19 N7 ? ? G G 15 G G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 15 N7 ? ? ? 1_555 A G 49 N2 ? ? G G 15 G G 49 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 15 O6 ? ? ? 1_555 A G 49 N1 ? ? G G 15 G G 49 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 16 N1 ? ? ? 1_555 A G 20 O6 ? ? G G 16 G G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 16 N2 ? ? ? 1_555 A G 20 N7 ? ? G G 16 G G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A G 16 N7 ? ? ? 1_555 A G 46 N2 ? ? G G 16 G G 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? A G 16 O6 ? ? ? 1_555 A G 46 N1 ? ? G G 16 G G 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? A C 18 N4 ? ? ? 1_555 A U 47 O4 ? ? G C 18 G U 47 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog45 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 55 N1 ? ? G C 18 G G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 55 O6 ? ? G C 18 G G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 55 N2 ? ? G C 18 G G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 53 O6 ? ? G G 19 G G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 53 N7 ? ? G G 19 G G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? A G 20 N1 ? ? ? 1_555 A G 51 O6 ? ? G G 20 G G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? A G 20 N2 ? ? ? 1_555 A G 51 N7 ? ? G G 20 G G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 45 N1 ? ? G U 22 G A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 45 N6 ? ? G U 22 G A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 44 N1 ? ? G C 23 G G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 44 O6 ? ? G C 23 G G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 44 N2 ? ? G C 23 G G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 41 N1 ? ? G C 24 G G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 41 O6 ? ? G C 24 G G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 41 N2 ? ? G C 24 G G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 40 N3 ? ? G A 25 G U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 40 O4 ? ? G A 25 G U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 39 N3 ? ? G G 26 G C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 39 O2 ? ? G G 26 G C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 39 N4 ? ? G G 26 G C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 38 N1 ? ? G U 27 G A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 38 N6 ? ? G U 27 G A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 37 N3 ? ? G A 28 G U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 37 O4 ? ? G A 28 G U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 36 N3 ? ? G G 29 G C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 36 O2 ? ? G G 29 G C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 36 N4 ? ? G G 29 G C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 35 N3 ? ? G G 30 G C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 35 O2 ? ? G G 30 G C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 35 N4 ? ? G G 30 G C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 31 O2 ? ? ? 1_555 A G 34 N1 ? ? G U 31 G G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog76 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 45 N7 ? ? G U 42 G A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog77 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 45 N6 ? ? G U 42 G A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? A G 46 N7 ? ? ? 1_555 A G 51 N2 ? ? G G 46 G G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? A G 46 O6 ? ? ? 1_555 A G 51 N1 ? ? G G 46 G G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? A U 47 O2 ? ? ? 1_555 A U 54 N3 ? ? G U 47 G U 54 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog81 hydrog ? ? A G 49 N7 ? ? ? 1_555 A G 53 N2 ? ? G G 49 G G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? A G 49 O6 ? ? ? 1_555 A G 53 N1 ? ? G G 49 G G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7L0Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006642 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000158 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020537 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032676 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? F ? ? 4.90428 4.07044 ? ? 12.99538 1.63651 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G G . n A 1 2 G 2 2 2 G G G . n A 1 3 G 3 3 3 G G G . n A 1 4 A 4 4 4 A A G . n A 1 5 G 5 5 5 G G G . n A 1 6 U 6 6 6 U U G . n A 1 7 A 7 7 7 A A G . n A 1 8 C 8 8 8 C C G . n A 1 9 G 9 9 9 G G G . n A 1 10 G 10 10 10 G G G . n A 1 11 U 11 11 11 U U G . n A 1 12 G 12 12 12 G G G . n A 1 13 A 13 13 13 A A G . n A 1 14 G 14 14 14 G G G . n A 1 15 G 15 15 15 G G G . n A 1 16 G 16 16 16 G G G . n A 1 17 U 17 17 17 U U G . n A 1 18 C 18 18 18 C C G . n A 1 19 G 19 19 19 G G G . n A 1 20 G 20 20 20 G G G . n A 1 21 G 21 21 21 G G G . n A 1 22 U 22 22 22 U U G . n A 1 23 C 23 23 23 C C G . n A 1 24 C 24 24 24 C C G . n A 1 25 A 25 25 25 A A G . n A 1 26 G 26 26 26 G G G . n A 1 27 U 27 27 27 U U G . n A 1 28 A 28 28 28 A A G . n A 1 29 G 29 29 29 G G G . n A 1 30 G 30 30 30 G G G . n A 1 31 U 31 31 31 U U G . n A 1 32 A 32 32 32 A A G . n A 1 33 C 33 33 33 C C G . n A 1 34 G 34 34 34 G G G . n A 1 35 C 35 35 35 C C G . n A 1 36 C 36 36 36 C C G . n A 1 37 U 37 37 37 U U G . n A 1 38 A 38 38 38 A A G . n A 1 39 C 39 39 39 C C G . n A 1 40 U 40 40 40 U U G . n A 1 41 G 41 41 41 G G G . n A 1 42 U 42 42 42 U U G . n A 1 43 U 43 43 43 U U G . n A 1 44 G 44 44 44 G G G . n A 1 45 A 45 45 45 A A G . n A 1 46 G 46 46 46 G G G . n A 1 47 U 47 47 47 U U G . n A 1 48 A 48 48 48 A A G . n A 1 49 G 49 49 49 G G G . n A 1 50 A 50 50 50 A A G . n A 1 51 G 51 51 51 G G G . n A 1 52 U 52 52 52 U U G . n A 1 53 G 53 53 53 G G G . n A 1 54 U 54 54 54 U U G . n A 1 55 G 55 55 55 G G G . n A 1 56 G 56 56 56 G G G . n A 1 57 G 57 57 57 G G G . n A 1 58 C 58 58 58 C C G . n A 1 59 U 59 59 59 U U G . n A 1 60 C 60 60 60 C C G . n A 1 61 C 61 61 61 C C G . n A 1 62 G 62 62 62 G G G . n A 1 63 U 63 63 63 U U G . n A 1 64 A 64 64 64 A A G . n A 1 65 C 65 65 65 C C G . n A 1 66 U 66 66 66 U U G . n A 1 67 C 67 67 67 C C G . n A 1 68 C 68 68 68 C C G . n A 1 69 C 69 69 69 C C G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2ZY 1 101 101 2ZY 2ZY G . C 3 SPM 1 102 102 SPM SPM G . D 3 SPM 1 103 103 SPM SPM G . E 3 SPM 1 104 104 SPM SPM G . F 4 MG 1 105 105 MG MG G . G 5 PO4 1 106 106 PO4 PO4 G . H 5 PO4 1 107 107 PO4 PO4 G . I 6 NA 1 108 108 NA NA G . J 6 NA 1 109 109 NA NA G . K 7 K 1 110 110 K K G . L 7 K 1 111 111 K K G . M 8 HOH 1 201 201 HOH HOH G . M 8 HOH 2 202 202 HOH HOH G . M 8 HOH 3 203 203 HOH HOH G . M 8 HOH 4 204 204 HOH HOH G . M 8 HOH 5 205 205 HOH HOH G . M 8 HOH 6 206 206 HOH HOH G . M 8 HOH 7 207 207 HOH HOH G . M 8 HOH 8 208 208 HOH HOH G . M 8 HOH 9 209 209 HOH HOH G . M 8 HOH 10 210 210 HOH HOH G . M 8 HOH 11 211 211 HOH HOH G . M 8 HOH 12 212 212 HOH HOH G . M 8 HOH 13 213 213 HOH HOH G . M 8 HOH 14 214 214 HOH HOH G . M 8 HOH 15 215 215 HOH HOH G . M 8 HOH 16 216 216 HOH HOH G . M 8 HOH 17 217 217 HOH HOH G . M 8 HOH 18 218 218 HOH HOH G . M 8 HOH 19 219 219 HOH HOH G . M 8 HOH 20 220 220 HOH HOH G . M 8 HOH 21 221 221 HOH HOH G . M 8 HOH 22 222 222 HOH HOH G . M 8 HOH 23 223 223 HOH HOH G . M 8 HOH 24 224 224 HOH HOH G . M 8 HOH 25 225 225 HOH HOH G . M 8 HOH 26 226 226 HOH HOH G . M 8 HOH 27 227 227 HOH HOH G . M 8 HOH 28 228 228 HOH HOH G . M 8 HOH 29 229 229 HOH HOH G . M 8 HOH 30 230 230 HOH HOH G . M 8 HOH 31 231 231 HOH HOH G . M 8 HOH 32 232 232 HOH HOH G . M 8 HOH 33 233 233 HOH HOH G . M 8 HOH 34 234 234 HOH HOH G . M 8 HOH 35 235 235 HOH HOH G . M 8 HOH 36 236 236 HOH HOH G . M 8 HOH 37 237 237 HOH HOH G . M 8 HOH 38 238 238 HOH HOH G . M 8 HOH 39 239 239 HOH HOH G . M 8 HOH 40 240 240 HOH HOH G . M 8 HOH 41 241 241 HOH HOH G . M 8 HOH 42 242 242 HOH HOH G . M 8 HOH 43 243 243 HOH HOH G . M 8 HOH 44 244 244 HOH HOH G . M 8 HOH 45 245 245 HOH HOH G . M 8 HOH 46 246 246 HOH HOH G . M 8 HOH 47 247 247 HOH HOH G . M 8 HOH 48 248 248 HOH HOH G . M 8 HOH 49 249 249 HOH HOH G . M 8 HOH 50 250 250 HOH HOH G . M 8 HOH 51 251 251 HOH HOH G . M 8 HOH 52 252 252 HOH HOH G . M 8 HOH 53 253 253 HOH HOH G . M 8 HOH 54 254 254 HOH HOH G . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2160 ? 1 MORE -44 ? 1 'SSA (A^2)' 12330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 G MG 105 ? F MG . 2 1 G NA 109 ? J NA . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 16 ? G G 16 ? 1_555 77.3 ? 2 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 19 ? G G 19 ? 1_555 61.6 ? 3 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 19 ? G G 19 ? 1_555 89.2 ? 4 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 20 ? G G 20 ? 1_555 128.5 ? 5 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 20 ? G G 20 ? 1_555 81.3 ? 6 O6 ? A G 19 ? G G 19 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 20 ? G G 20 ? 1_555 71.8 ? 7 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 46 ? G G 46 ? 1_555 95.7 ? 8 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 46 ? G G 46 ? 1_555 79.0 ? 9 O6 ? A G 19 ? G G 19 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 46 ? G G 46 ? 1_555 156.4 ? 10 O6 ? A G 20 ? G G 20 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 46 ? G G 46 ? 1_555 125.4 ? 11 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 64.8 ? 12 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 132.5 ? 13 O6 ? A G 19 ? G G 19 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 96.5 ? 14 O6 ? A G 20 ? G G 20 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 145.0 ? 15 O6 ? A G 46 ? G G 46 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 77.5 ? 16 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 147.0 ? 17 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 129.9 ? 18 O6 ? A G 19 ? G G 19 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 126.7 ? 19 O6 ? A G 20 ? G G 20 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 79.5 ? 20 O6 ? A G 46 ? G G 46 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 75.5 ? 21 O6 ? A G 49 ? G G 49 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 51 ? G G 51 ? 1_555 82.2 ? 22 O6 ? A G 15 ? G G 15 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 91.6 ? 23 O6 ? A G 16 ? G G 16 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 144.8 ? 24 O6 ? A G 19 ? G G 19 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 56.7 ? 25 O6 ? A G 20 ? G G 20 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 79.9 ? 26 O6 ? A G 46 ? G G 46 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 135.9 ? 27 O6 ? A G 49 ? G G 49 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 66.6 ? 28 O6 ? A G 51 ? G G 51 ? 1_555 K ? K K . ? G K 110 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 75.0 ? 29 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 19 ? G G 19 ? 1_555 71.1 ? 30 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 68.6 ? 31 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 49 ? G G 49 ? 1_555 97.4 ? 32 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 111.1 ? 33 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 63.6 ? 34 O6 ? A G 49 ? G G 49 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 53 ? G G 53 ? 1_555 69.0 ? 35 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 "O2'" ? A U 54 ? G U 54 ? 1_555 145.8 ? 36 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 "O2'" ? A U 54 ? G U 54 ? 1_555 135.2 ? 37 O6 ? A G 49 ? G G 49 ? 1_555 K ? L K . ? G K 111 ? 1_555 "O2'" ? A U 54 ? G U 54 ? 1_555 84.3 ? 38 O6 ? A G 53 ? G G 53 ? 1_555 K ? L K . ? G K 111 ? 1_555 "O2'" ? A U 54 ? G U 54 ? 1_555 75.8 ? 39 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O2 ? A U 54 ? G U 54 ? 1_555 83.6 ? 40 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 O2 ? A U 54 ? G U 54 ? 1_555 154.3 ? 41 O6 ? A G 49 ? G G 49 ? 1_555 K ? L K . ? G K 111 ? 1_555 O2 ? A U 54 ? G U 54 ? 1_555 68.5 ? 42 O6 ? A G 53 ? G G 53 ? 1_555 K ? L K . ? G K 111 ? 1_555 O2 ? A U 54 ? G U 54 ? 1_555 125.0 ? 43 "O2'" ? A U 54 ? G U 54 ? 1_555 K ? L K . ? G K 111 ? 1_555 O2 ? A U 54 ? G U 54 ? 1_555 66.8 ? 44 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 108.5 ? 45 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 70.1 ? 46 O6 ? A G 49 ? G G 49 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 167.1 ? 47 O6 ? A G 53 ? G G 53 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 101.7 ? 48 "O2'" ? A U 54 ? G U 54 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 102.3 ? 49 O2 ? A U 54 ? G U 54 ? 1_555 K ? L K . ? G K 111 ? 1_555 O6 ? A G 55 ? G G 55 ? 1_555 124.2 ? 50 O6 ? A G 15 ? G G 15 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 83.6 ? 51 O6 ? A G 19 ? G G 19 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 120.3 ? 52 O6 ? A G 49 ? G G 49 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 122.6 ? 53 O6 ? A G 53 ? G G 53 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 164.7 ? 54 "O2'" ? A U 54 ? G U 54 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 94.5 ? 55 O2 ? A U 54 ? G U 54 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 59.0 ? 56 O6 ? A G 55 ? G G 55 ? 1_555 K ? L K . ? G K 111 ? 1_555 O ? M HOH . ? G HOH 234 ? 1_555 68.3 ? 57 OP2 ? A G 19 ? G G 19 ? 1_555 NA ? I NA . ? G NA 108 ? 1_555 O ? M HOH . ? G HOH 211 ? 1_555 131.3 ? 58 OP2 ? A G 19 ? G G 19 ? 1_555 NA ? I NA . ? G NA 108 ? 1_555 O ? M HOH . ? G HOH 235 ? 1_555 90.6 ? 59 O ? M HOH . ? G HOH 211 ? 1_555 NA ? I NA . ? G NA 108 ? 1_555 O ? M HOH . ? G HOH 235 ? 1_555 123.2 ? 60 "O2'" ? A A 32 ? G A 32 ? 1_555 NA ? J NA . ? G NA 109 ? 1_555 "O2'" ? A A 32 ? G A 32 ? 1_555 0.0 ? 61 O1 ? G PO4 . ? G PO4 106 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O1 ? G PO4 . ? G PO4 106 ? 2_456 178.5 ? 62 O1 ? G PO4 . ? G PO4 106 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 1_555 63.7 ? 63 O1 ? G PO4 . ? G PO4 106 ? 2_456 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 1_555 117.4 ? 64 O1 ? G PO4 . ? G PO4 106 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 1_555 60.8 ? 65 O1 ? G PO4 . ? G PO4 106 ? 2_456 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 1_555 118.8 ? 66 O1 ? H PO4 . ? G PO4 107 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 1_555 57.5 ? 67 O1 ? G PO4 . ? G PO4 106 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 2_456 117.4 ? 68 O1 ? G PO4 . ? G PO4 106 ? 2_456 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 2_456 63.7 ? 69 O1 ? H PO4 . ? G PO4 107 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 2_456 97.2 ? 70 O4 ? H PO4 . ? G PO4 107 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O1 ? H PO4 . ? G PO4 107 ? 2_456 153.8 ? 71 O1 ? G PO4 . ? G PO4 106 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 2_456 118.8 ? 72 O1 ? G PO4 . ? G PO4 106 ? 2_456 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 2_456 60.8 ? 73 O1 ? H PO4 . ? G PO4 107 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 2_456 153.8 ? 74 O4 ? H PO4 . ? G PO4 107 ? 1_555 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 2_456 148.4 ? 75 O1 ? H PO4 . ? G PO4 107 ? 2_456 MG ? F MG . ? G MG 105 ? 1_555 O4 ? H PO4 . ? G PO4 107 ? 2_456 57.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-26 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -36.8152928881 _pdbx_refine_tls.origin_y 12.3705808217 _pdbx_refine_tls.origin_z -0.479627498632 _pdbx_refine_tls.T[1][1] 0.420948081066 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0260468795674 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0545975283894 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.236482955583 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0149382859037 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.244261938933 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 5.01072173497 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.150228286574 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.598431720792 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 2.42095497899 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.280314402507 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.1857530096 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0722560140963 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.179569026511 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0709574158993 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.290368139125 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0897809830997 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.139898891319 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.016607284078 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.149997906571 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.00115005845845 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7L0Z _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 G A 13 ? ? O G HOH 201 ? ? 2.01 2 1 O G HOH 222 ? ? O G HOH 225 ? ? 2.13 3 1 O G HOH 246 ? ? O G HOH 251 ? ? 2.17 4 1 OP1 G A 7 ? ? O G HOH 202 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 G G 44 ? ? C6 G G 44 ? ? O6 G G 44 ? ? 124.86 128.60 -3.74 0.60 N 2 1 C6 G G 49 ? ? N1 G G 49 ? ? C2 G G 49 ? ? 121.08 125.10 -4.02 0.60 N 3 1 N7 G G 49 ? ? C8 G G 49 ? ? N9 G G 49 ? ? 110.05 113.10 -3.05 0.50 N 4 1 C5 G G 51 ? ? C6 G G 51 ? ? O6 G G 51 ? ? 124.71 128.60 -3.89 0.60 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 G SPM 103 ? N1 ? D SPM 1 N1 2 1 N 1 G SPM 103 ? C2 ? D SPM 1 C2 3 1 N 1 G SPM 103 ? C3 ? D SPM 1 C3 4 1 N 1 G SPM 103 ? C4 ? D SPM 1 C4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2ZY O18 O N N 1 2ZY C15 C N N 2 2ZY N14 N N N 3 2ZY C16 C N N 4 2ZY C19 C N N 5 2ZY C13 C N N 6 2ZY C17 C N N 7 2ZY C11 C N N 8 2ZY N12 N N N 9 2ZY C10 C N N 10 2ZY C2 C Y N 11 2ZY C1 C Y N 12 2ZY C6 C Y N 13 2ZY F8 F N N 14 2ZY C5 C Y N 15 2ZY O9 O N N 16 2ZY C4 C Y N 17 2ZY F7 F N N 18 2ZY C3 C Y N 19 2ZY F20 F N N 20 2ZY F21 F N N 21 2ZY F22 F N N 22 2ZY H1 H N N 23 2ZY H2 H N N 24 2ZY H4 H N N 25 2ZY H5 H N N 26 2ZY H6 H N N 27 2ZY H7 H N N 28 2ZY H9 H N N 29 2ZY H10 H N N 30 2ZY H11 H N N 31 A OP3 O N N 32 A P P N N 33 A OP1 O N N 34 A OP2 O N N 35 A "O5'" O N N 36 A "C5'" C N N 37 A "C4'" C N R 38 A "O4'" O N N 39 A "C3'" C N S 40 A "O3'" O N N 41 A "C2'" C N R 42 A "O2'" O N N 43 A "C1'" C N R 44 A N9 N Y N 45 A C8 C Y N 46 A N7 N Y N 47 A C5 C Y N 48 A C6 C Y N 49 A N6 N N N 50 A N1 N Y N 51 A C2 C Y N 52 A N3 N Y N 53 A C4 C Y N 54 A HOP3 H N N 55 A HOP2 H N N 56 A "H5'" H N N 57 A "H5''" H N N 58 A "H4'" H N N 59 A "H3'" H N N 60 A "HO3'" H N N 61 A "H2'" H N N 62 A "HO2'" H N N 63 A "H1'" H N N 64 A H8 H N N 65 A H61 H N N 66 A H62 H N N 67 A H2 H N N 68 C OP3 O N N 69 C P P N N 70 C OP1 O N N 71 C OP2 O N N 72 C "O5'" O N N 73 C "C5'" C N N 74 C "C4'" C N R 75 C "O4'" O N N 76 C "C3'" C N S 77 C "O3'" O N N 78 C "C2'" C N R 79 C "O2'" O N N 80 C "C1'" C N R 81 C N1 N N N 82 C C2 C N N 83 C O2 O N N 84 C N3 N N N 85 C C4 C N N 86 C N4 N N N 87 C C5 C N N 88 C C6 C N N 89 C HOP3 H N N 90 C HOP2 H N N 91 C "H5'" H N N 92 C "H5''" H N N 93 C "H4'" H N N 94 C "H3'" H N N 95 C "HO3'" H N N 96 C "H2'" H N N 97 C "HO2'" H N N 98 C "H1'" H N N 99 C H41 H N N 100 C H42 H N N 101 C H5 H N N 102 C H6 H N N 103 G OP3 O N N 104 G P P N N 105 G OP1 O N N 106 G OP2 O N N 107 G "O5'" O N N 108 G "C5'" C N N 109 G "C4'" C N R 110 G "O4'" O N N 111 G "C3'" C N S 112 G "O3'" O N N 113 G "C2'" C N R 114 G "O2'" O N N 115 G "C1'" C N R 116 G N9 N Y N 117 G C8 C Y N 118 G N7 N Y N 119 G C5 C Y N 120 G C6 C N N 121 G O6 O N N 122 G N1 N N N 123 G C2 C N N 124 G N2 N N N 125 G N3 N N N 126 G C4 C Y N 127 G HOP3 H N N 128 G HOP2 H N N 129 G "H5'" H N N 130 G "H5''" H N N 131 G "H4'" H N N 132 G "H3'" H N N 133 G "HO3'" H N N 134 G "H2'" H N N 135 G "HO2'" H N N 136 G "H1'" H N N 137 G H8 H N N 138 G H1 H N N 139 G H21 H N N 140 G H22 H N N 141 HOH O O N N 142 HOH H1 H N N 143 HOH H2 H N N 144 K K K N N 145 MG MG MG N N 146 NA NA NA N N 147 PO4 P P N N 148 PO4 O1 O N N 149 PO4 O2 O N N 150 PO4 O3 O N N 151 PO4 O4 O N N 152 SPM N1 N N N 153 SPM C2 C N N 154 SPM C3 C N N 155 SPM C4 C N N 156 SPM N5 N N N 157 SPM C6 C N N 158 SPM C7 C N N 159 SPM C8 C N N 160 SPM C9 C N N 161 SPM N10 N N N 162 SPM C11 C N N 163 SPM C12 C N N 164 SPM C13 C N N 165 SPM N14 N N N 166 SPM HN11 H N N 167 SPM HN12 H N N 168 SPM H21 H N N 169 SPM H22 H N N 170 SPM H31 H N N 171 SPM H32 H N N 172 SPM H41 H N N 173 SPM H42 H N N 174 SPM HN5 H N N 175 SPM H61 H N N 176 SPM H62 H N N 177 SPM H71 H N N 178 SPM H72 H N N 179 SPM H81 H N N 180 SPM H82 H N N 181 SPM H91 H N N 182 SPM H92 H N N 183 SPM HN0 H N N 184 SPM H111 H N N 185 SPM H112 H N N 186 SPM H121 H N N 187 SPM H122 H N N 188 SPM H131 H N N 189 SPM H132 H N N 190 SPM HN41 H N N 191 SPM HN42 H N N 192 U OP3 O N N 193 U P P N N 194 U OP1 O N N 195 U OP2 O N N 196 U "O5'" O N N 197 U "C5'" C N N 198 U "C4'" C N R 199 U "O4'" O N N 200 U "C3'" C N S 201 U "O3'" O N N 202 U "C2'" C N R 203 U "O2'" O N N 204 U "C1'" C N R 205 U N1 N N N 206 U C2 C N N 207 U O2 O N N 208 U N3 N N N 209 U C4 C N N 210 U O4 O N N 211 U C5 C N N 212 U C6 C N N 213 U HOP3 H N N 214 U HOP2 H N N 215 U "H5'" H N N 216 U "H5''" H N N 217 U "H4'" H N N 218 U "H3'" H N N 219 U "HO3'" H N N 220 U "H2'" H N N 221 U "HO2'" H N N 222 U "H1'" H N N 223 U H3 H N N 224 U H5 H N N 225 U H6 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ZY F20 C19 sing N N 1 2ZY F22 C19 sing N N 2 2ZY C19 F21 sing N N 3 2ZY C19 C16 sing N N 4 2ZY C16 N14 sing N N 5 2ZY O18 C15 doub N N 6 2ZY C15 N14 sing N N 7 2ZY C15 C11 sing N N 8 2ZY N14 C13 sing N N 9 2ZY C10 C11 doub N Z 10 2ZY C10 C2 sing N N 11 2ZY C11 N12 sing N N 12 2ZY C13 C17 sing N N 13 2ZY C13 N12 doub N N 14 2ZY C1 C2 doub Y N 15 2ZY C1 C6 sing Y N 16 2ZY C2 C3 sing Y N 17 2ZY F8 C6 sing N N 18 2ZY C6 C5 doub Y N 19 2ZY C3 C4 doub Y N 20 2ZY C5 C4 sing Y N 21 2ZY C5 O9 sing N N 22 2ZY C4 F7 sing N N 23 2ZY C16 H1 sing N N 24 2ZY C16 H2 sing N N 25 2ZY C17 H4 sing N N 26 2ZY C17 H5 sing N N 27 2ZY C17 H6 sing N N 28 2ZY C10 H7 sing N N 29 2ZY C1 H9 sing N N 30 2ZY O9 H10 sing N N 31 2ZY C3 H11 sing N N 32 A OP3 P sing N N 33 A OP3 HOP3 sing N N 34 A P OP1 doub N N 35 A P OP2 sing N N 36 A P "O5'" sing N N 37 A OP2 HOP2 sing N N 38 A "O5'" "C5'" sing N N 39 A "C5'" "C4'" sing N N 40 A "C5'" "H5'" sing N N 41 A "C5'" "H5''" sing N N 42 A "C4'" "O4'" sing N N 43 A "C4'" "C3'" sing N N 44 A "C4'" "H4'" sing N N 45 A "O4'" "C1'" sing N N 46 A "C3'" "O3'" sing N N 47 A "C3'" "C2'" sing N N 48 A "C3'" "H3'" sing N N 49 A "O3'" "HO3'" sing N N 50 A "C2'" "O2'" sing N N 51 A "C2'" "C1'" sing N N 52 A "C2'" "H2'" sing N N 53 A "O2'" "HO2'" sing N N 54 A "C1'" N9 sing N N 55 A "C1'" "H1'" sing N N 56 A N9 C8 sing Y N 57 A N9 C4 sing Y N 58 A C8 N7 doub Y N 59 A C8 H8 sing N N 60 A N7 C5 sing Y N 61 A C5 C6 sing Y N 62 A C5 C4 doub Y N 63 A C6 N6 sing N N 64 A C6 N1 doub Y N 65 A N6 H61 sing N N 66 A N6 H62 sing N N 67 A N1 C2 sing Y N 68 A C2 N3 doub Y N 69 A C2 H2 sing N N 70 A N3 C4 sing Y N 71 C OP3 P sing N N 72 C OP3 HOP3 sing N N 73 C P OP1 doub N N 74 C P OP2 sing N N 75 C P "O5'" sing N N 76 C OP2 HOP2 sing N N 77 C "O5'" "C5'" sing N N 78 C "C5'" "C4'" sing N N 79 C "C5'" "H5'" sing N N 80 C "C5'" "H5''" sing N N 81 C "C4'" "O4'" sing N N 82 C "C4'" "C3'" sing N N 83 C "C4'" "H4'" sing N N 84 C "O4'" "C1'" sing N N 85 C "C3'" "O3'" sing N N 86 C "C3'" "C2'" sing N N 87 C "C3'" "H3'" sing N N 88 C "O3'" "HO3'" sing N N 89 C "C2'" "O2'" sing N N 90 C "C2'" "C1'" sing N N 91 C "C2'" "H2'" sing N N 92 C "O2'" "HO2'" sing N N 93 C "C1'" N1 sing N N 94 C "C1'" "H1'" sing N N 95 C N1 C2 sing N N 96 C N1 C6 sing N N 97 C C2 O2 doub N N 98 C C2 N3 sing N N 99 C N3 C4 doub N N 100 C C4 N4 sing N N 101 C C4 C5 sing N N 102 C N4 H41 sing N N 103 C N4 H42 sing N N 104 C C5 C6 doub N N 105 C C5 H5 sing N N 106 C C6 H6 sing N N 107 G OP3 P sing N N 108 G OP3 HOP3 sing N N 109 G P OP1 doub N N 110 G P OP2 sing N N 111 G P "O5'" sing N N 112 G OP2 HOP2 sing N N 113 G "O5'" "C5'" sing N N 114 G "C5'" "C4'" sing N N 115 G "C5'" "H5'" sing N N 116 G "C5'" "H5''" sing N N 117 G "C4'" "O4'" sing N N 118 G "C4'" "C3'" sing N N 119 G "C4'" "H4'" sing N N 120 G "O4'" "C1'" sing N N 121 G "C3'" "O3'" sing N N 122 G "C3'" "C2'" sing N N 123 G "C3'" "H3'" sing N N 124 G "O3'" "HO3'" sing N N 125 G "C2'" "O2'" sing N N 126 G "C2'" "C1'" sing N N 127 G "C2'" "H2'" sing N N 128 G "O2'" "HO2'" sing N N 129 G "C1'" N9 sing N N 130 G "C1'" "H1'" sing N N 131 G N9 C8 sing Y N 132 G N9 C4 sing Y N 133 G C8 N7 doub Y N 134 G C8 H8 sing N N 135 G N7 C5 sing Y N 136 G C5 C6 sing N N 137 G C5 C4 doub Y N 138 G C6 O6 doub N N 139 G C6 N1 sing N N 140 G N1 C2 sing N N 141 G N1 H1 sing N N 142 G C2 N2 sing N N 143 G C2 N3 doub N N 144 G N2 H21 sing N N 145 G N2 H22 sing N N 146 G N3 C4 sing N N 147 HOH O H1 sing N N 148 HOH O H2 sing N N 149 PO4 P O1 doub N N 150 PO4 P O2 sing N N 151 PO4 P O3 sing N N 152 PO4 P O4 sing N N 153 SPM N1 C2 sing N N 154 SPM N1 HN11 sing N N 155 SPM N1 HN12 sing N N 156 SPM C2 C3 sing N N 157 SPM C2 H21 sing N N 158 SPM C2 H22 sing N N 159 SPM C3 C4 sing N N 160 SPM C3 H31 sing N N 161 SPM C3 H32 sing N N 162 SPM C4 N5 sing N N 163 SPM C4 H41 sing N N 164 SPM C4 H42 sing N N 165 SPM N5 C6 sing N N 166 SPM N5 HN5 sing N N 167 SPM C6 C7 sing N N 168 SPM C6 H61 sing N N 169 SPM C6 H62 sing N N 170 SPM C7 C8 sing N N 171 SPM C7 H71 sing N N 172 SPM C7 H72 sing N N 173 SPM C8 C9 sing N N 174 SPM C8 H81 sing N N 175 SPM C8 H82 sing N N 176 SPM C9 N10 sing N N 177 SPM C9 H91 sing N N 178 SPM C9 H92 sing N N 179 SPM N10 C11 sing N N 180 SPM N10 HN0 sing N N 181 SPM C11 C12 sing N N 182 SPM C11 H111 sing N N 183 SPM C11 H112 sing N N 184 SPM C12 C13 sing N N 185 SPM C12 H121 sing N N 186 SPM C12 H122 sing N N 187 SPM C13 N14 sing N N 188 SPM C13 H131 sing N N 189 SPM C13 H132 sing N N 190 SPM N14 HN41 sing N N 191 SPM N14 HN42 sing N N 192 U OP3 P sing N N 193 U OP3 HOP3 sing N N 194 U P OP1 doub N N 195 U P OP2 sing N N 196 U P "O5'" sing N N 197 U OP2 HOP2 sing N N 198 U "O5'" "C5'" sing N N 199 U "C5'" "C4'" sing N N 200 U "C5'" "H5'" sing N N 201 U "C5'" "H5''" sing N N 202 U "C4'" "O4'" sing N N 203 U "C4'" "C3'" sing N N 204 U "C4'" "H4'" sing N N 205 U "O4'" "C1'" sing N N 206 U "C3'" "O3'" sing N N 207 U "C3'" "C2'" sing N N 208 U "C3'" "H3'" sing N N 209 U "O3'" "HO3'" sing N N 210 U "C2'" "O2'" sing N N 211 U "C2'" "C1'" sing N N 212 U "C2'" "H2'" sing N N 213 U "O2'" "HO2'" sing N N 214 U "C1'" N1 sing N N 215 U "C1'" "H1'" sing N N 216 U N1 C2 sing N N 217 U N1 C6 sing N N 218 U C2 O2 doub N N 219 U C2 N3 sing N N 220 U N3 C4 sing N N 221 U N3 H3 sing N N 222 U C4 O4 doub N N 223 U C4 C5 sing N N 224 U C5 C6 doub N N 225 U C5 H5 sing N N 226 U C6 H6 sing N N 227 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7L0Z 'double helix' 7L0Z 'a-form double helix' 7L0Z 'parallel strands' 7L0Z tetraloop 7L0Z 'bulge loop' 7L0Z 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 69 1_555 0.405 0.099 -0.404 -6.776 -14.498 3.394 1 G_G1:C69_G G 1 ? G 69 ? 19 1 1 A G 2 1_555 A C 68 1_555 -0.904 -0.199 -0.716 -7.690 -12.827 1.846 2 G_G2:C68_G G 2 ? G 68 ? 19 1 1 A G 3 1_555 A C 67 1_555 -1.110 -0.086 0.235 -1.584 -14.826 9.475 3 G_G3:C67_G G 3 ? G 67 ? 19 1 1 A A 4 1_555 A U 66 1_555 0.433 -0.322 -0.128 -0.245 -13.621 -4.605 4 G_A4:U66_G G 4 ? G 66 ? 20 1 1 A G 5 1_555 A C 65 1_555 1.033 -0.113 -0.020 -0.471 -19.037 5.141 5 G_G5:C65_G G 5 ? G 65 ? 19 1 1 A U 6 1_555 A A 64 1_555 -0.423 0.161 -0.100 5.583 -4.201 0.462 6 G_U6:A64_G G 6 ? G 64 ? 20 1 1 A A 7 1_555 A U 63 1_555 0.113 -0.078 0.421 5.220 -9.279 -3.704 7 G_A7:U63_G G 7 ? G 63 ? 20 1 1 A C 8 1_555 A G 62 1_555 0.114 -0.135 -0.261 10.085 -12.730 -2.665 8 G_C8:G62_G G 8 ? G 62 ? 19 1 1 A G 9 1_555 A C 61 1_555 -0.032 -0.252 0.187 -1.438 -4.441 -0.437 9 G_G9:C61_G G 9 ? G 61 ? 19 1 1 A G 10 1_555 A C 60 1_555 0.097 -0.252 -0.138 -9.157 -13.228 2.918 10 G_G10:C60_G G 10 ? G 60 ? 19 1 1 A U 11 1_555 A U 59 1_555 1.874 -1.728 0.528 -15.608 -14.226 4.483 11 G_U11:U59_G G 11 ? G 59 ? 16 1 1 A G 12 1_555 A C 58 1_555 -0.471 0.091 -0.407 -27.882 -23.782 3.259 12 G_G12:C58_G G 12 ? G 58 ? 19 1 1 A A 13 1_555 A G 57 1_555 0.231 1.542 -0.381 -23.073 0.218 -25.910 13 G_A13:G57_G G 13 ? G 57 ? 8 1 1 A G 14 1_555 A G 56 1_555 4.698 1.224 0.130 -7.932 5.884 -44.701 14 G_G14:G56_G G 14 ? G 56 ? ? 1 1 A U 47 1_555 A U 54 1_555 -1.604 -4.040 1.097 -16.780 15.636 -138.999 15 G_U47:U54_G G 47 ? G 54 ? ? ? 1 A G 49 1_555 A G 53 1_555 -1.609 -3.482 -0.622 23.791 -13.484 87.679 16 G_G49:G53_G G 49 ? G 53 ? 6 3 1 A G 34 1_555 A U 31 1_555 -1.197 5.522 -0.316 18.824 -9.557 102.065 17 G_G34:U31_G G 34 ? G 31 ? ? 6 1 A C 35 1_555 A G 30 1_555 -0.039 -0.234 -0.067 9.449 -7.817 -0.829 18 G_C35:G30_G G 35 ? G 30 ? 19 1 1 A C 36 1_555 A G 29 1_555 0.255 -0.146 -0.019 -0.901 -7.010 1.120 19 G_C36:G29_G G 36 ? G 29 ? 19 1 1 A U 37 1_555 A A 28 1_555 -0.135 -0.156 0.220 2.501 -6.641 -1.322 20 G_U37:A28_G G 37 ? G 28 ? 20 1 1 A A 38 1_555 A U 27 1_555 -0.326 -0.014 0.256 3.113 -16.697 2.307 21 G_A38:U27_G G 38 ? G 27 ? 20 1 1 A C 39 1_555 A G 26 1_555 0.448 -0.302 0.285 -1.366 -18.559 2.255 22 G_C39:G26_G G 39 ? G 26 ? 19 1 1 A U 40 1_555 A A 25 1_555 0.015 -0.158 0.338 -9.759 -17.672 3.088 23 G_U40:A25_G G 40 ? G 25 ? 20 1 1 A G 41 1_555 A C 24 1_555 -0.207 -0.087 0.249 -3.158 -6.889 0.100 24 G_G41:C24_G G 41 ? G 24 ? 19 1 1 A G 44 1_555 A C 23 1_555 -0.165 -0.130 -0.290 -8.124 -9.177 1.773 25 G_G44:C23_G G 44 ? G 23 ? 19 1 1 A A 45 1_555 A U 22 1_555 0.039 -0.153 -0.177 4.245 4.881 -1.142 26 G_A45:U22_G G 45 ? G 22 ? 20 1 1 A G 46 1_555 A G 51 1_555 -1.713 -3.358 -0.314 -0.738 -8.777 91.872 27 G_G46:G51_G G 46 ? G 51 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 69 1_555 A G 2 1_555 A C 68 1_555 -0.366 -1.348 3.385 -4.201 7.423 23.284 -5.353 -0.398 2.847 17.650 9.989 24.776 1 GG_G1G2:C68C69_GG G 1 ? G 69 ? G 2 ? G 68 ? 1 A G 2 1_555 A C 68 1_555 A G 3 1_555 A C 67 1_555 0.840 -1.642 3.060 -7.005 6.245 28.403 -4.291 -2.870 2.383 12.310 13.807 29.883 2 GG_G2G3:C67C68_GG G 2 ? G 68 ? G 3 ? G 67 ? 1 A G 3 1_555 A C 67 1_555 A A 4 1_555 A U 66 1_555 -1.085 -1.803 3.294 -2.125 5.508 40.519 -3.169 1.324 3.084 7.902 3.049 40.929 3 GG_G3A4:U66C67_GG G 3 ? G 67 ? G 4 ? G 66 ? 1 A A 4 1_555 A U 66 1_555 A G 5 1_555 A C 65 1_555 0.137 -0.696 3.340 0.406 8.978 34.644 -2.424 -0.165 3.071 14.770 -0.668 35.756 4 GG_A4G5:C65U66_GG G 4 ? G 66 ? G 5 ? G 65 ? 1 A G 5 1_555 A C 65 1_555 A U 6 1_555 A A 64 1_555 -0.357 -1.724 3.138 -0.184 1.781 23.153 -4.861 0.828 3.001 4.429 0.457 23.221 5 GG_G5U6:A64C65_GG G 5 ? G 65 ? G 6 ? G 64 ? 1 A U 6 1_555 A A 64 1_555 A A 7 1_555 A U 63 1_555 0.205 -1.460 3.072 -1.693 10.650 35.785 -3.516 -0.516 2.538 16.866 2.680 37.324 6 GG_U6A7:U63A64_GG G 6 ? G 64 ? G 7 ? G 63 ? 1 A A 7 1_555 A U 63 1_555 A C 8 1_555 A G 62 1_555 0.430 -1.805 3.079 8.291 5.102 33.340 -3.745 0.447 2.804 8.665 -14.083 34.693 7 GG_A7C8:G62U63_GG G 7 ? G 63 ? G 8 ? G 62 ? 1 A C 8 1_555 A G 62 1_555 A G 9 1_555 A C 61 1_555 -0.047 -1.836 3.457 -2.506 12.146 28.563 -5.633 -0.367 2.483 23.280 4.803 31.088 8 GG_C8G9:C61G62_GG G 8 ? G 62 ? G 9 ? G 61 ? 1 A G 9 1_555 A C 61 1_555 A G 10 1_555 A C 60 1_555 0.784 -1.505 3.411 3.172 10.088 29.938 -4.580 -0.860 2.834 18.805 -5.913 31.711 9 GG_G9G10:C60C61_GG G 9 ? G 61 ? G 10 ? G 60 ? 1 A G 10 1_555 A C 60 1_555 A U 11 1_555 A U 59 1_555 0.195 -0.982 3.507 -4.464 4.608 45.102 -1.696 -0.666 3.363 5.972 5.785 45.532 10 GG_G10U11:U59C60_GG G 10 ? G 60 ? G 11 ? G 59 ? 1 A U 11 1_555 A U 59 1_555 A G 12 1_555 A C 58 1_555 -0.239 -1.965 3.309 11.333 7.046 28.606 -4.844 2.412 2.497 13.379 -21.519 31.507 11 GG_U11G12:C58U59_GG G 11 ? G 59 ? G 12 ? G 58 ? 1 A G 12 1_555 A C 58 1_555 A A 13 1_555 A G 57 1_555 -1.121 -1.614 3.131 3.679 3.177 29.654 -3.708 2.851 2.790 6.156 -7.128 30.041 12 GG_G12A13:G57C58_GG G 12 ? G 58 ? G 13 ? G 57 ? 1 A A 13 1_555 A G 57 1_555 A G 14 1_555 A G 56 1_555 -0.680 -1.710 3.056 3.937 2.410 41.262 -2.646 1.341 2.882 3.407 -5.566 41.508 13 GG_A13G14:G56G57_GG G 13 ? G 57 ? G 14 ? G 56 ? 1 A G 14 1_555 A G 56 1_555 A U 47 1_555 A U 54 1_555 3.462 -1.006 -5.286 -110.104 -132.595 75.596 -2.325 -0.221 -4.379 -67.435 55.996 173.956 14 GG_G14U47:U54G56_GG G 14 ? G 56 ? G 47 ? G 54 ? 1 A U 47 1_555 A U 54 1_555 A G 49 1_555 A G 53 1_555 -5.168 -0.219 0.614 106.374 -131.594 94.653 -0.264 2.465 -1.630 -66.904 -54.081 172.693 15 GG_U47G49:G53U54_GG G 47 ? G 54 ? G 49 ? G 53 ? 1 A G 34 1_555 A U 31 1_555 A C 35 1_555 A G 30 1_555 -1.570 -3.455 0.505 111.084 -126.955 62.957 -1.290 1.176 1.599 -65.505 -57.316 170.361 16 GG_G34C35:G30U31_GG G 34 ? G 31 ? G 35 ? G 30 ? 1 A C 35 1_555 A G 30 1_555 A C 36 1_555 A G 29 1_555 -0.463 -2.106 3.425 -0.948 7.316 32.121 -4.936 0.658 2.900 13.009 1.685 32.936 17 GG_C35C36:G29G30_GG G 35 ? G 30 ? G 36 ? G 29 ? 1 A C 36 1_555 A G 29 1_555 A U 37 1_555 A A 28 1_555 -0.381 -1.965 3.183 -2.466 3.095 27.102 -4.874 0.228 2.966 6.561 5.227 27.384 18 GG_C36U37:A28G29_GG G 36 ? G 29 ? G 37 ? G 28 ? 1 A U 37 1_555 A A 28 1_555 A A 38 1_555 A U 27 1_555 -0.002 -1.571 3.063 -1.156 9.698 31.605 -4.186 -0.166 2.484 17.296 2.061 33.043 19 GG_U37A38:U27A28_GG G 37 ? G 28 ? G 38 ? G 27 ? 1 A A 38 1_555 A U 27 1_555 A C 39 1_555 A G 26 1_555 -0.293 -1.208 3.291 0.276 8.218 36.679 -2.914 0.490 2.960 12.861 -0.432 37.558 20 GG_A38C39:G26U27_GG G 38 ? G 27 ? G 39 ? G 26 ? 1 A C 39 1_555 A G 26 1_555 A U 40 1_555 A A 25 1_555 0.334 -1.316 3.360 1.919 8.730 30.572 -3.958 -0.266 2.898 16.129 -3.546 31.822 21 GG_C39U40:A25G26_GG G 39 ? G 26 ? G 40 ? G 25 ? 1 A U 40 1_555 A A 25 1_555 A G 41 1_555 A C 24 1_555 0.386 -1.401 2.920 2.759 11.341 31.368 -3.988 -0.294 2.313 20.124 -4.895 33.418 22 GG_U40G41:C24A25_GG G 40 ? G 25 ? G 41 ? G 24 ? 1 A G 41 1_555 A C 24 1_555 A G 44 1_555 A C 23 1_555 -0.822 -1.957 3.407 3.234 4.883 38.912 -3.485 1.603 3.074 7.280 -4.821 39.333 23 GG_G41G44:C23C24_GG G 41 ? G 24 ? G 44 ? G 23 ? 1 A G 44 1_555 A C 23 1_555 A A 45 1_555 A U 22 1_555 -0.946 -1.696 3.057 -0.494 3.027 33.645 -3.366 1.554 2.911 5.217 0.851 33.781 24 GG_G44A45:U22C23_GG G 44 ? G 23 ? G 45 ? G 22 ? 1 A A 45 1_555 A U 22 1_555 A G 46 1_555 A G 51 1_555 0.769 6.818 -0.964 153.922 -82.085 101.408 3.133 -0.906 -2.348 -41.338 -77.515 176.481 25 GG_A45G46:G51U22_GG G 45 ? G 22 ? G 46 ? G 51 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 2ZY 3 SPERMINE SPM 4 'MAGNESIUM ION' MG 5 'PHOSPHATE ION' PO4 6 'SODIUM ION' NA 7 'POTASSIUM ION' K 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5OB3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 #