HEADER HYDROLASE 15-DEC-20 7L1Z TITLE UNLOCKING THE STRUCTURAL FEATURES FOR THE EXO-XYLOBIOSIDASE ACTIVITY TITLE 2 OF AN UNUSUAL GH11 MEMBER IDENTIFIED IN A COMPOST-DERIVED CONSORTIUM TITLE 3 - NT-TRUNCATED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXO-B-1,4-BETA-XYLANASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THIS PROTEIN FORM IS A NT TRUNCATED VERSION. THE COMPND 6 REFERRED MISMATCH IS A METHIONINE REPLACEMENT OF E27 TO REMOVE THE COMPND 7 FIRST 27 RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETM11/LIC KEYWDS GLYCOSIDE HYDROLASE FAMILY 11, GH11, EXO-B-1, 4-XYLOBIOSIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.S.KADOWAKI,I.POLIKARPOV,L.BRIGANTI,D.E.EVANGELISTA REVDAT 4 18-OCT-23 7L1Z 1 REMARK REVDAT 3 22-SEP-21 7L1Z 1 JRNL REVDAT 2 11-AUG-21 7L1Z 1 JRNL REVDAT 1 04-AUG-21 7L1Z 0 JRNL AUTH M.A.S.KADOWAKI,L.BRIGANTI,D.E.EVANGELISTA,A.ECHEVARRIA-POZA, JRNL AUTH 2 T.TRYFONA,V.O.A.PELLEGRINI,D.G.NAKAYAMA,P.DUPREE, JRNL AUTH 3 I.POLIKARPOV JRNL TITL UNLOCKING THE STRUCTURAL FEATURES FOR THE XYLOBIOHYDROLASE JRNL TITL 2 ACTIVITY OF AN UNUSUAL GH11 MEMBER IDENTIFIED IN A JRNL TITL 3 COMPOST-DERIVED CONSORTIUM. JRNL REF BIOTECHNOL.BIOENG. V. 118 4052 2021 JRNL REFN ESSN 1097-0290 JRNL PMID 34232504 JRNL DOI 10.1002/BIT.27880 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC2_3794 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6200 - 5.2700 1.00 2980 141 0.2133 0.2389 REMARK 3 2 5.2700 - 4.1800 1.00 2837 168 0.1369 0.1863 REMARK 3 3 4.1800 - 3.6500 1.00 2829 147 0.1477 0.1709 REMARK 3 4 3.6500 - 3.3200 1.00 2793 157 0.1515 0.1885 REMARK 3 5 3.3200 - 3.0800 1.00 2827 131 0.1738 0.2299 REMARK 3 6 3.0800 - 2.9000 1.00 2795 157 0.2011 0.2690 REMARK 3 7 2.9000 - 2.7500 1.00 2794 135 0.2021 0.2483 REMARK 3 8 2.7500 - 2.6300 1.00 2813 122 0.1973 0.2166 REMARK 3 9 2.6300 - 2.5300 1.00 2775 138 0.2150 0.2790 REMARK 3 10 2.5300 - 2.4500 1.00 2760 163 0.2165 0.2544 REMARK 3 11 2.4500 - 2.3700 1.00 2797 118 0.2071 0.2719 REMARK 3 12 2.3700 - 2.3000 1.00 2797 142 0.2096 0.2512 REMARK 3 13 2.3000 - 2.2400 1.00 2763 135 0.2089 0.2691 REMARK 3 14 2.2400 - 2.1900 1.00 2772 149 0.2132 0.2446 REMARK 3 15 2.1900 - 2.1400 1.00 2765 130 0.2283 0.2716 REMARK 3 16 2.1400 - 2.0900 1.00 2754 141 0.2437 0.2720 REMARK 3 17 2.0900 - 2.0500 1.00 2789 137 0.2499 0.2909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 27:247) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4579 -29.0225 4.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1534 REMARK 3 T33: 0.2046 T12: 0.0014 REMARK 3 T13: -0.0337 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.9734 L22: 0.8066 REMARK 3 L33: 1.4278 L12: -1.0257 REMARK 3 L13: 1.0548 L23: -0.4438 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: 0.0844 S13: 0.0140 REMARK 3 S21: 0.0067 S22: 0.0305 S23: -0.2084 REMARK 3 S31: -0.1237 S32: 0.0770 S33: -0.0156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 27:247) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5088 -52.0599 1.6936 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1178 REMARK 3 T33: 0.1223 T12: -0.0035 REMARK 3 T13: 0.0094 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.7253 L22: 0.9298 REMARK 3 L33: 0.9618 L12: -0.1746 REMARK 3 L13: 0.2031 L23: -0.0586 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.2734 S13: 0.0165 REMARK 3 S21: -0.1649 S22: -0.0240 S23: 0.0614 REMARK 3 S31: -0.0010 S32: 0.0229 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 27:247) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5760 -4.1101 -17.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1525 REMARK 3 T33: 0.0864 T12: -0.0076 REMARK 3 T13: -0.0177 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.7774 L22: 1.6705 REMARK 3 L33: 1.2778 L12: -0.6379 REMARK 3 L13: -0.6724 L23: 1.0868 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: 0.0292 S13: 0.0892 REMARK 3 S21: 0.0133 S22: -0.0521 S23: -0.0825 REMARK 3 S31: -0.2279 S32: -0.0323 S33: -0.0478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7L1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE TRIHYDRATE PH REMARK 280 6.5 AND 30% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.80750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.80750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.28100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.84300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.28100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.84300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.80750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 66.28100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.84300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.80750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 66.28100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.84300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 487 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 510 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 549 O HOH C 615 2.08 REMARK 500 O HOH C 610 O HOH C 629 2.10 REMARK 500 O HOH C 501 O HOH C 631 2.11 REMARK 500 O HOH A 402 O HOH A 529 2.11 REMARK 500 O HOH C 604 O HOH C 647 2.12 REMARK 500 O HOH B 490 O HOH B 528 2.12 REMARK 500 OD2 ASP A 139 O HOH A 401 2.14 REMARK 500 O HOH A 506 O HOH A 550 2.14 REMARK 500 O HOH A 540 O HOH A 557 2.15 REMARK 500 O HOH A 517 O HOH A 534 2.15 REMARK 500 O2 SO4 B 306 O HOH B 401 2.17 REMARK 500 ND2 ASN C 96 O HOH C 501 2.17 REMARK 500 O HOH C 626 O HOH C 657 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 130 -38.29 -130.93 REMARK 500 ASN A 230 61.23 39.66 REMARK 500 GLU B 28 59.56 31.44 REMARK 500 LYS B 161 -166.82 -103.98 REMARK 500 VAL B 162 77.40 -41.53 REMARK 500 ASN B 167 -59.53 -131.08 REMARK 500 THR B 170 -101.93 0.05 REMARK 500 VAL C 162 71.25 -40.55 REMARK 500 ILE C 166 33.12 81.73 REMARK 500 THR C 170 -162.36 178.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 164 SER B 165 147.81 REMARK 500 PRO C 169 THR C 170 148.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 406 DBREF 7L1Z A 27 247 PDB 7L1Z 7L1Z 27 247 DBREF 7L1Z B 27 247 PDB 7L1Z 7L1Z 27 247 DBREF 7L1Z C 27 247 PDB 7L1Z 7L1Z 27 247 SEQRES 1 A 221 MET GLU ALA THR LEU ILE THR GLN PRO HIS ALA THR GLY SEQRES 2 A 221 HIS VAL GLY ASN PHE PHE PHE THR HIS TRP LYS ASP GLY SEQRES 3 A 221 GLY SER ALA ALA LEU ASP LEU ASP ALA LYS GLY ASN PHE SEQRES 4 A 221 SER VAL SER TRP GLN GLY GLY GLY TYR ASN TYR VAL GLY SEQRES 5 A 221 GLY PRO GLY TRP HIS PHE GLY ASP LYS ASN ARG VAL ILE SEQRES 6 A 221 GLY TYR ARG PHE ASN GLN ASP SER GLY ALA SER TYR ILE SEQRES 7 A 221 THR LEU TYR GLY TRP GLY TYR ASP LYS SER MET PRO ALA SEQRES 8 A 221 THR ASP PRO ALA HIS LEU VAL GLU TYR TYR ILE LEU GLN SEQRES 9 A 221 ARG TRP THR TYR ASP PRO SER GLN ASP GLY ILE TYR GLY SEQRES 10 A 221 LYS THR PHE VAL SER ASN GLY ILE GLU TYR SER THR TYR SEQRES 11 A 221 ARG SER ILE ARG LYS VAL LYS PRO SER ILE ASN GLY PRO SEQRES 12 A 221 THR THR PHE TYR GLN TYR TRP SER LYS PRO SER ALA GLN SEQRES 13 A 221 GLN GLU LEU GLY LYS ASP HIS LYS ILE ILE PHE ALA ASP SEQRES 14 A 221 HIS VAL LYS ALA TRP ALA ASP THR GLY TRP ILE LEU PRO SEQRES 15 A 221 ASP MET ASN ASN PHE ASP ALA SER ASP ASP PRO THR TYR SEQRES 16 A 221 GLN VAL LEU ALA VAL GLU VAL PHE ASN PRO GLN LYS ASN SEQRES 17 A 221 GLY THR ALA SER GLY GLN VAL TRP ASP GLU THR PRO ARG SEQRES 1 B 221 MET GLU ALA THR LEU ILE THR GLN PRO HIS ALA THR GLY SEQRES 2 B 221 HIS VAL GLY ASN PHE PHE PHE THR HIS TRP LYS ASP GLY SEQRES 3 B 221 GLY SER ALA ALA LEU ASP LEU ASP ALA LYS GLY ASN PHE SEQRES 4 B 221 SER VAL SER TRP GLN GLY GLY GLY TYR ASN TYR VAL GLY SEQRES 5 B 221 GLY PRO GLY TRP HIS PHE GLY ASP LYS ASN ARG VAL ILE SEQRES 6 B 221 GLY TYR ARG PHE ASN GLN ASP SER GLY ALA SER TYR ILE SEQRES 7 B 221 THR LEU TYR GLY TRP GLY TYR ASP LYS SER MET PRO ALA SEQRES 8 B 221 THR ASP PRO ALA HIS LEU VAL GLU TYR TYR ILE LEU GLN SEQRES 9 B 221 ARG TRP THR TYR ASP PRO SER GLN ASP GLY ILE TYR GLY SEQRES 10 B 221 LYS THR PHE VAL SER ASN GLY ILE GLU TYR SER THR TYR SEQRES 11 B 221 ARG SER ILE ARG LYS VAL LYS PRO SER ILE ASN GLY PRO SEQRES 12 B 221 THR THR PHE TYR GLN TYR TRP SER LYS PRO SER ALA GLN SEQRES 13 B 221 GLN GLU LEU GLY LYS ASP HIS LYS ILE ILE PHE ALA ASP SEQRES 14 B 221 HIS VAL LYS ALA TRP ALA ASP THR GLY TRP ILE LEU PRO SEQRES 15 B 221 ASP MET ASN ASN PHE ASP ALA SER ASP ASP PRO THR TYR SEQRES 16 B 221 GLN VAL LEU ALA VAL GLU VAL PHE ASN PRO GLN LYS ASN SEQRES 17 B 221 GLY THR ALA SER GLY GLN VAL TRP ASP GLU THR PRO ARG SEQRES 1 C 221 MET GLU ALA THR LEU ILE THR GLN PRO HIS ALA THR GLY SEQRES 2 C 221 HIS VAL GLY ASN PHE PHE PHE THR HIS TRP LYS ASP GLY SEQRES 3 C 221 GLY SER ALA ALA LEU ASP LEU ASP ALA LYS GLY ASN PHE SEQRES 4 C 221 SER VAL SER TRP GLN GLY GLY GLY TYR ASN TYR VAL GLY SEQRES 5 C 221 GLY PRO GLY TRP HIS PHE GLY ASP LYS ASN ARG VAL ILE SEQRES 6 C 221 GLY TYR ARG PHE ASN GLN ASP SER GLY ALA SER TYR ILE SEQRES 7 C 221 THR LEU TYR GLY TRP GLY TYR ASP LYS SER MET PRO ALA SEQRES 8 C 221 THR ASP PRO ALA HIS LEU VAL GLU TYR TYR ILE LEU GLN SEQRES 9 C 221 ARG TRP THR TYR ASP PRO SER GLN ASP GLY ILE TYR GLY SEQRES 10 C 221 LYS THR PHE VAL SER ASN GLY ILE GLU TYR SER THR TYR SEQRES 11 C 221 ARG SER ILE ARG LYS VAL LYS PRO SER ILE ASN GLY PRO SEQRES 12 C 221 THR THR PHE TYR GLN TYR TRP SER LYS PRO SER ALA GLN SEQRES 13 C 221 GLN GLU LEU GLY LYS ASP HIS LYS ILE ILE PHE ALA ASP SEQRES 14 C 221 HIS VAL LYS ALA TRP ALA ASP THR GLY TRP ILE LEU PRO SEQRES 15 C 221 ASP MET ASN ASN PHE ASP ALA SER ASP ASP PRO THR TYR SEQRES 16 C 221 GLN VAL LEU ALA VAL GLU VAL PHE ASN PRO GLN LYS ASN SEQRES 17 C 221 GLY THR ALA SER GLY GLN VAL TRP ASP GLU THR PRO ARG HET EDO A 301 4 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET EDO B 301 4 HET EDO B 302 4 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET EDO C 401 4 HET EDO C 402 4 HET SO4 C 403 5 HET SO4 C 404 5 HET SO4 C 405 5 HET SO4 C 406 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 5(C2 H6 O2) FORMUL 5 SO4 15(O4 S 2-) FORMUL 24 HOH *506(H2 O) HELIX 1 AA1 ASP A 119 ALA A 121 5 3 HELIX 2 AA2 ASP A 135 GLY A 140 5 6 HELIX 3 AA3 PHE A 193 ASP A 202 1 10 HELIX 4 AA4 ASP B 119 ALA B 121 5 3 HELIX 5 AA5 ASP B 135 GLY B 140 5 6 HELIX 6 AA6 PHE B 193 THR B 203 1 11 HELIX 7 AA7 ASP C 119 ALA C 121 5 3 HELIX 8 AA8 ASP C 135 GLY C 140 5 6 HELIX 9 AA9 PHE C 193 THR C 203 1 11 SHEET 1 AA1 6 ALA A 29 ILE A 32 0 SHEET 2 AA1 6 ALA A 56 ASP A 60 -1 O LEU A 57 N ILE A 32 SHEET 3 AA1 6 ASN A 64 TRP A 69 -1 O SER A 66 N ASP A 58 SHEET 4 AA1 6 GLY A 235 ASP A 243 -1 O ALA A 237 N VAL A 67 SHEET 5 AA1 6 VAL A 90 ASP A 98 -1 N GLY A 92 O TRP A 242 SHEET 6 AA1 6 HIS A 189 ILE A 192 -1 O HIS A 189 N TYR A 93 SHEET 1 AA2 9 HIS A 36 VAL A 41 0 SHEET 2 AA2 9 PHE A 44 LYS A 50 -1 O PHE A 44 N VAL A 41 SHEET 3 AA2 9 ASN A 75 TRP A 82 -1 O GLY A 81 N PHE A 45 SHEET 4 AA2 9 GLN A 222 PHE A 229 -1 O VAL A 226 N GLY A 78 SHEET 5 AA2 9 TYR A 103 TYR A 111 -1 N TYR A 107 O VAL A 223 SHEET 6 AA2 9 LEU A 123 TRP A 132 -1 O ARG A 131 N ILE A 104 SHEET 7 AA2 9 THR A 170 PRO A 179 1 O TYR A 175 N GLU A 125 SHEET 8 AA2 9 ILE A 151 LYS A 163 -1 N TYR A 156 O TRP A 176 SHEET 9 AA2 9 ILE A 141 SER A 148 -1 N PHE A 146 O TYR A 153 SHEET 1 AA3 6 THR B 30 ILE B 32 0 SHEET 2 AA3 6 ALA B 56 LEU B 59 -1 O LEU B 57 N ILE B 32 SHEET 3 AA3 6 ASN B 64 TRP B 69 -1 O SER B 66 N ASP B 58 SHEET 4 AA3 6 GLY B 235 ASP B 243 -1 O ALA B 237 N VAL B 67 SHEET 5 AA3 6 VAL B 90 ASP B 98 -1 N ARG B 94 O GLN B 240 SHEET 6 AA3 6 HIS B 189 ILE B 192 -1 O HIS B 189 N TYR B 93 SHEET 1 AA4 9 HIS B 36 VAL B 41 0 SHEET 2 AA4 9 PHE B 44 LYS B 50 -1 O PHE B 44 N VAL B 41 SHEET 3 AA4 9 ASN B 75 TRP B 82 -1 O GLY B 81 N PHE B 45 SHEET 4 AA4 9 GLN B 222 PHE B 229 -1 O LEU B 224 N PRO B 80 SHEET 5 AA4 9 TYR B 103 TYR B 111 -1 N TYR B 107 O VAL B 223 SHEET 6 AA4 9 LEU B 123 TRP B 132 -1 O ARG B 131 N ILE B 104 SHEET 7 AA4 9 PHE B 172 PRO B 179 1 O TYR B 175 N GLU B 125 SHEET 8 AA4 9 ILE B 151 ARG B 160 -1 N TYR B 156 O TRP B 176 SHEET 9 AA4 9 ILE B 141 SER B 148 -1 N PHE B 146 O TYR B 153 SHEET 1 AA5 6 THR C 30 ILE C 32 0 SHEET 2 AA5 6 ALA C 56 LEU C 59 -1 O LEU C 57 N ILE C 32 SHEET 3 AA5 6 ASN C 64 TRP C 69 -1 O SER C 66 N ASP C 58 SHEET 4 AA5 6 GLY C 235 ASP C 243 -1 O ALA C 237 N VAL C 67 SHEET 5 AA5 6 VAL C 90 ASP C 98 -1 N GLY C 92 O TRP C 242 SHEET 6 AA5 6 HIS C 189 ILE C 192 -1 O HIS C 189 N TYR C 93 SHEET 1 AA6 9 HIS C 36 VAL C 41 0 SHEET 2 AA6 9 PHE C 44 LYS C 50 -1 O PHE C 44 N VAL C 41 SHEET 3 AA6 9 ASN C 75 TRP C 82 -1 O GLY C 81 N PHE C 45 SHEET 4 AA6 9 GLN C 222 PHE C 229 -1 O VAL C 226 N GLY C 78 SHEET 5 AA6 9 TYR C 103 TYR C 111 -1 N TYR C 107 O VAL C 223 SHEET 6 AA6 9 LEU C 123 TRP C 132 -1 O ARG C 131 N ILE C 104 SHEET 7 AA6 9 THR C 170 PRO C 179 1 O TYR C 175 N GLU C 125 SHEET 8 AA6 9 ILE C 151 LYS C 163 -1 N TYR C 156 O TRP C 176 SHEET 9 AA6 9 ILE C 141 SER C 148 -1 N PHE C 146 O TYR C 153 SITE 1 AC1 8 ASN A 149 ILE A 151 LYS A 187 HIS A 189 SITE 2 AC1 8 LYS A 190 HOH A 402 HOH A 455 HOH A 542 SITE 1 AC2 3 ARG A 131 GLU A 184 LEU A 185 SITE 1 AC3 2 ALA A 181 GLN A 182 SITE 1 AC4 6 TRP A 132 LYS A 178 HOH A 403 HOH A 476 SITE 2 AC4 6 HOH A 490 HOH B 427 SITE 1 AC5 4 ARG A 160 GLY C 52 GLY C 53 TYR C 74 SITE 1 AC6 3 ARG A 94 LYS A 187 ASP A 188 SITE 1 AC7 3 HIS A 36 ALA A 37 THR A 38 SITE 1 AC8 2 GLN B 70 ASN B 234 SITE 1 AC9 5 LYS B 62 ASN B 64 HOH B 413 HOH B 479 SITE 2 AC9 5 HOH B 485 SITE 1 AD1 3 ARG B 131 GLU B 184 LEU B 185 SITE 1 AD2 6 LYS A 62 ASN A 64 LYS B 187 HOH B 413 SITE 2 AD2 6 HOH B 479 HOH B 485 SITE 1 AD3 7 MET A 27 ASN B 149 ASP B 188 LYS B 190 SITE 2 AD3 7 HOH B 401 HOH B 426 HOH B 490 SITE 1 AD4 7 MET A 27 HOH A 410 ARG B 94 LYS B 187 SITE 2 AD4 7 ASP B 188 HOH B 405 HOH B 426 SITE 1 AD5 2 TYR C 134 PHE C 229 SITE 1 AD6 6 ASN C 149 ILE C 151 ASP C 188 HIS C 189 SITE 2 AD6 6 LYS C 190 HOH C 526 SITE 1 AD7 5 ARG C 131 GLU C 184 LEU C 185 HOH C 528 SITE 2 AD7 5 HOH C 586 SITE 1 AD8 4 LYS C 62 ASN C 64 HOH C 510 HOH C 574 SITE 1 AD9 3 ARG C 94 LYS C 187 ASP C 188 SITE 1 AE1 2 ARG C 160 LYS C 161 CRYST1 132.562 149.686 79.615 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012560 0.00000