HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-DEC-20 7L25 TITLE HPK1 IN COMPLEX WITH COMPOUND 18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 6 KINASE 1,MEKKK 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS HPK1 HEMATOPOIETIC PROGENITOR KINASE, INHIBITOR COMPLEX, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.LESBURG REVDAT 3 03-APR-24 7L25 1 REMARK REVDAT 2 31-MAR-21 7L25 1 JRNL REVDAT 1 17-MAR-21 7L25 0 JRNL AUTH E.C.YU,J.L.METHOT,X.FRADERA,C.A.LESBURG,B.M.LACEY, JRNL AUTH 2 P.SILIPHAIVANH,P.LIU,D.M.SMITH,Z.XU,J.A.PIESVAUX,S.KAWAMURA, JRNL AUTH 3 H.XU,J.R.MILLER,M.BITTINGER,A.PASTERNAK JRNL TITL IDENTIFICATION OF POTENT REVERSE INDAZOLE INHIBITORS FOR JRNL TITL 2 HPK1. JRNL REF ACS MED.CHEM.LETT. V. 12 459 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33738073 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00672 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 48669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.439 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4667 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4527 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.613 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10362 ; 1.287 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;33.798 ;23.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 792 ;11.932 ;15.076 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5237 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1059 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 292 B 7 292 6842 0.030 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -18.032 5.040 -27.229 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.1131 REMARK 3 T33: 0.2665 T12: 0.0017 REMARK 3 T13: -0.0049 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.1533 L22: 1.2325 REMARK 3 L33: 3.5422 L12: -0.7414 REMARK 3 L13: 1.7167 L23: -0.6281 REMARK 3 S TENSOR REMARK 3 S11: 0.2259 S12: -0.0414 S13: -0.7184 REMARK 3 S21: -0.0344 S22: -0.0565 S23: 0.1744 REMARK 3 S31: 0.6748 S32: -0.1280 S33: -0.1695 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): -40.937 4.399 -34.063 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.1506 REMARK 3 T33: 0.2110 T12: -0.0953 REMARK 3 T13: -0.0529 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.4492 L22: 3.4830 REMARK 3 L33: 0.4565 L12: -2.1547 REMARK 3 L13: -0.9323 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: 0.0008 S13: -0.5992 REMARK 3 S21: 0.1172 S22: -0.0485 S23: 0.2918 REMARK 3 S31: 0.0551 S32: -0.0052 S33: 0.1686 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 155 REMARK 3 RESIDUE RANGE : A 192 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -38.338 21.183 -37.897 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0199 REMARK 3 T33: 0.0404 T12: 0.0014 REMARK 3 T13: -0.0041 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.3913 L22: 1.7633 REMARK 3 L33: 2.7460 L12: -0.2560 REMARK 3 L13: 0.0809 L23: 0.3436 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0096 S13: 0.1287 REMARK 3 S21: 0.0786 S22: -0.0080 S23: 0.1683 REMARK 3 S31: -0.1072 S32: -0.1909 S33: 0.0643 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -39.740 26.790 -8.343 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.1344 REMARK 3 T33: 0.1977 T12: 0.0007 REMARK 3 T13: 0.0095 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 2.2968 L22: 1.5381 REMARK 3 L33: 3.5934 L12: -0.5357 REMARK 3 L13: 0.5518 L23: -1.7668 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0232 S13: -0.0326 REMARK 3 S21: 0.0959 S22: 0.0987 S23: 0.3400 REMARK 3 S31: -0.1459 S32: -0.4302 S33: -0.1446 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): -40.873 4.268 -1.196 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.3783 REMARK 3 T33: 0.2481 T12: -0.1058 REMARK 3 T13: -0.0080 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.8642 L22: 3.7058 REMARK 3 L33: 0.0979 L12: -2.0970 REMARK 3 L13: -0.0106 L23: 0.3549 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.3644 S13: -0.2805 REMARK 3 S21: -0.2338 S22: -0.1253 S23: 0.7432 REMARK 3 S31: -0.0382 S32: 0.0208 S33: 0.1108 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 155 REMARK 3 RESIDUE RANGE : B 192 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): -23.903 6.316 2.623 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0545 REMARK 3 T33: 0.0409 T12: -0.0047 REMARK 3 T13: -0.0078 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.7570 L22: 1.3427 REMARK 3 L33: 2.2138 L12: -0.1521 REMARK 3 L13: -0.3218 L23: 0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.1402 S13: -0.1875 REMARK 3 S21: -0.0476 S22: -0.0407 S23: -0.1086 REMARK 3 S31: 0.1828 S32: 0.1345 S33: 0.0677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7L25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 71.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED STUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NO DISCLOSED, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.19850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.86450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.19850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.86450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 6 REMARK 465 PRO B 294 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 8 CD1 REMARK 480 THR A 27 OG1 CG2 REMARK 480 LYS A 49 CG CD CE NZ REMARK 480 ASP A 55 CG OD1 OD2 REMARK 480 VAL A 56 CG1 CG2 REMARK 480 SER A 57 OG REMARK 480 GLN A 60 CG CD OE1 NE2 REMARK 480 LYS A 61 CE NZ REMARK 480 GLU A 62 CD OE1 OE2 REMARK 480 ILE A 65 CD1 REMARK 480 LYS A 86 CE NZ REMARK 480 ILE A 162 CD1 REMARK 480 LYS A 189 CG CD CE NZ REMARK 480 LYS A 229 NZ REMARK 480 ARG A 236 CZ NH1 NH2 REMARK 480 LYS A 238 CE NZ REMARK 480 LYS A 240 CG CD CE NZ REMARK 480 LYS A 260 CD CE NZ REMARK 480 LYS A 261 NZ REMARK 480 LYS A 292 CE NZ REMARK 480 ASP B 7 CG OD1 OD2 REMARK 480 THR B 27 OG1 CG2 REMARK 480 LYS B 49 CD CE NZ REMARK 480 LYS B 61 CD CE NZ REMARK 480 LEU B 64 CD1 CD2 REMARK 480 ILE B 65 CD1 REMARK 480 LYS B 67 CD CE NZ REMARK 480 GLN B 85 CD OE1 NE2 REMARK 480 LYS B 86 NZ REMARK 480 ILE B 173 CD1 REMARK 480 LYS B 229 CE NZ REMARK 480 LYS B 238 CE NZ REMARK 480 LYS B 240 CD CE NZ REMARK 480 LYS B 257 CE NZ REMARK 480 LYS B 260 CD CE NZ REMARK 480 LYS B 261 CE NZ REMARK 480 LYS B 290 CE NZ REMARK 480 LYS B 292 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 182 CG GLU A 182 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 236 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 12 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 169 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET B 179 CG - SD - CE ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 38 -61.97 -91.12 REMARK 500 LEU A 255 33.11 -96.20 REMARK 500 VAL B 38 -60.43 -97.51 REMARK 500 ARG B 136 -2.09 74.75 REMARK 500 LEU B 255 32.59 -94.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 604 DISTANCE = 6.85 ANGSTROMS DBREF 7L25 A 6 294 UNP Q92918 M4K1_HUMAN 6 294 DBREF 7L25 B 6 294 UNP Q92918 M4K1_HUMAN 6 294 SEQADV 7L25 ALA A 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L25 CYS A 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQADV 7L25 ALA B 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L25 CYS B 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQRES 1 A 289 PRO ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP SEQRES 2 A 289 LEU LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL SEQRES 3 A 289 PHE LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA SEQRES 4 A 289 LEU LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER SEQRES 5 A 289 THR LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG SEQRES 6 A 289 HIS ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP SEQRES 7 A 289 LEU GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA SEQRES 8 A 289 GLY SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SEQRES 9 A 289 SER GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU SEQRES 10 A 289 GLN GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS SEQRES 11 A 289 ARG ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA SEQRES 12 A 289 GLY GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN SEQRES 13 A 289 ILE GLY ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY SEQRES 14 A 289 THR PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA SEQRES 15 A 289 LEU LYS GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER SEQRES 16 A 289 LEU GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO SEQRES 17 A 289 PRO LEU PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU SEQRES 18 A 289 MET THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU SEQRES 19 A 289 LYS GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS SEQRES 20 A 289 VAL THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA SEQRES 21 A 289 THR LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY SEQRES 22 A 289 LEU ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU SEQRES 23 A 289 LYS ASN PRO SEQRES 1 B 289 PRO ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP SEQRES 2 B 289 LEU LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL SEQRES 3 B 289 PHE LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA SEQRES 4 B 289 LEU LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER SEQRES 5 B 289 THR LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG SEQRES 6 B 289 HIS ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP SEQRES 7 B 289 LEU GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA SEQRES 8 B 289 GLY SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SEQRES 9 B 289 SER GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU SEQRES 10 B 289 GLN GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS SEQRES 11 B 289 ARG ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA SEQRES 12 B 289 GLY GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN SEQRES 13 B 289 ILE GLY ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY SEQRES 14 B 289 THR PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA SEQRES 15 B 289 LEU LYS GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER SEQRES 16 B 289 LEU GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO SEQRES 17 B 289 PRO LEU PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU SEQRES 18 B 289 MET THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU SEQRES 19 B 289 LYS GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS SEQRES 20 B 289 VAL THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA SEQRES 21 B 289 THR LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY SEQRES 22 B 289 LEU ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU SEQRES 23 B 289 LYS ASN PRO HET XHS A 301 31 HET EDO A 302 4 HET EDO A 303 4 HET XHS B 301 31 HET EDO B 302 4 HET EDO B 303 8 HETNAM XHS 6-(2-FLUORO-6-METHOXYPHENYL)-1-[6-(4-METHYLPIPERAZIN-1- HETNAM 2 XHS YL)PYRIDIN-2-YL]-1H-PYRAZOLO[4,3-C]PYRIDINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 XHS 2(C23 H23 F N6 O) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *394(H2 O) HELIX 1 AA1 ASP A 12 ASP A 15 5 4 HELIX 2 AA2 ASP A 55 CYS A 69 1 15 HELIX 3 AA3 SER A 98 GLY A 107 1 10 HELIX 4 AA4 SER A 110 GLN A 131 1 22 HELIX 5 AA5 LYS A 139 ALA A 141 5 3 HELIX 6 AA6 GLY A 157 GLN A 161 5 5 HELIX 7 AA7 ILE A 162 PHE A 172 1 11 HELIX 8 AA8 ALA A 180 ALA A 185 1 6 HELIX 9 AA9 LEU A 195 LEU A 211 1 17 HELIX 10 AB1 HIS A 219 LYS A 229 1 11 HELIX 11 AB2 SER A 244 LEU A 255 1 12 HELIX 12 AB3 SER A 258 ARG A 262 5 5 HELIX 13 AB4 SER A 264 LEU A 269 1 6 HELIX 14 AB5 HIS A 271 GLN A 276 1 6 HELIX 15 AB6 ARG A 281 ASN A 293 1 13 HELIX 16 AB7 ASP B 12 ASP B 15 5 4 HELIX 17 AB8 ASP B 55 SER B 57 5 3 HELIX 18 AB9 THR B 58 CYS B 69 1 12 HELIX 19 AC1 LEU B 99 GLY B 107 1 9 HELIX 20 AC2 SER B 110 GLN B 131 1 22 HELIX 21 AC3 LYS B 139 ALA B 141 5 3 HELIX 22 AC4 GLY B 157 GLN B 161 5 5 HELIX 23 AC5 ILE B 162 PHE B 172 1 11 HELIX 24 AC6 ALA B 180 ALA B 185 1 6 HELIX 25 AC7 ALA B 185 GLY B 190 1 6 HELIX 26 AC8 LEU B 195 LEU B 211 1 17 HELIX 27 AC9 HIS B 219 LYS B 229 1 11 HELIX 28 AD1 SER B 244 LEU B 255 1 12 HELIX 29 AD2 SER B 258 ARG B 262 5 5 HELIX 30 AD3 SER B 264 LEU B 269 1 6 HELIX 31 AD4 HIS B 271 GLN B 276 1 6 HELIX 32 AD5 ARG B 281 ASN B 293 1 13 SHEET 1 AA1 6 ILE A 8 PHE A 9 0 SHEET 2 AA1 6 TYR A 77 TRP A 83 1 O SER A 80 N PHE A 9 SHEET 3 AA1 6 LYS A 86 GLU A 92 -1 O CYS A 90 N GLY A 79 SHEET 4 AA1 6 LEU A 42 LYS A 49 -1 N VAL A 48 O LEU A 87 SHEET 5 AA1 6 GLU A 30 ASP A 36 -1 N GLU A 30 O MET A 47 SHEET 6 AA1 6 TYR A 17 GLY A 24 -1 N LEU A 20 O LYS A 33 SHEET 1 AA2 2 ILE A 143 ILE A 145 0 SHEET 2 AA2 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 6 ILE B 8 PHE B 9 0 SHEET 2 AA3 6 TYR B 77 TRP B 83 1 O LEU B 82 N PHE B 9 SHEET 3 AA3 6 LYS B 86 GLU B 92 -1 O CYS B 90 N GLY B 79 SHEET 4 AA3 6 LEU B 42 LYS B 49 -1 N VAL B 48 O LEU B 87 SHEET 5 AA3 6 GLU B 30 ASP B 36 -1 N GLU B 30 O MET B 47 SHEET 6 AA3 6 TYR B 17 GLY B 25 -1 N LEU B 20 O LYS B 33 SHEET 1 AA4 3 GLY B 97 SER B 98 0 SHEET 2 AA4 3 ILE B 143 ILE B 145 -1 O ILE B 145 N GLY B 97 SHEET 3 AA4 3 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 SSBOND 1 CYS A 191 CYS A 191 1555 2455 2.31 SSBOND 2 CYS B 191 CYS B 191 1555 2455 2.93 CRYST1 90.397 97.729 71.397 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014006 0.00000