HEADER TRANSFERASE 16-DEC-20 7L26 TITLE HPK1 IN COMPLEX WITH COMPOUND 38 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 6 KINASE 1,MEKKK 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HPK1 HEMATOPOIETIC PROGENITOR KINASE, INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.LESBURG REVDAT 4 03-APR-24 7L26 1 REMARK REVDAT 3 06-MAR-24 7L26 1 REMARK REVDAT 2 31-MAR-21 7L26 1 JRNL REVDAT 1 17-MAR-21 7L26 0 JRNL AUTH E.C.YU,J.L.METHOT,X.FRADERA,C.A.LESBURG,B.M.LACEY, JRNL AUTH 2 P.SILIPHAIVANH,P.LIU,D.M.SMITH,Z.XU,J.A.PIESVAUX,S.KAWAMURA, JRNL AUTH 3 H.XU,J.R.MILLER,M.BITTINGER,A.PASTERNAK JRNL TITL IDENTIFICATION OF POTENT REVERSE INDAZOLE INHIBITORS FOR JRNL TITL 2 HPK1. JRNL REF ACS MED.CHEM.LETT. V. 12 459 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33738073 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00672 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 98.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 53146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.47000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -4.07000 REMARK 3 B12 (A**2) : -0.43000 REMARK 3 B13 (A**2) : 1.81000 REMARK 3 B23 (A**2) : -3.30000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.436 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8833 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8484 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11998 ; 1.666 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19392 ; 1.262 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1106 ; 7.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 341 ;34.446 ;23.871 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1470 ;13.936 ;15.082 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1346 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9891 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1967 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 294 B 8 294 6354 0.010 0.050 REMARK 3 2 A 8 294 C 8 294 6694 0.010 0.050 REMARK 3 3 A 8 294 D 8 294 6408 0.020 0.050 REMARK 3 4 B 8 294 C 8 294 6326 0.010 0.050 REMARK 3 5 B 8 294 D 8 294 6396 0.010 0.050 REMARK 3 6 C 8 294 D 8 294 6358 0.020 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -6.700 5.045 -61.417 REMARK 3 T TENSOR REMARK 3 T11: 0.8564 T22: 0.9439 REMARK 3 T33: 0.4058 T12: -0.4408 REMARK 3 T13: -0.1475 T23: 0.1474 REMARK 3 L TENSOR REMARK 3 L11: 2.7061 L22: 7.6825 REMARK 3 L33: 12.3407 L12: -2.1229 REMARK 3 L13: 4.4103 L23: -8.3361 REMARK 3 S TENSOR REMARK 3 S11: 0.4507 S12: -0.1429 S13: 0.0066 REMARK 3 S21: -0.6721 S22: -0.2061 S23: 0.0915 REMARK 3 S31: 0.4781 S32: -0.3929 S33: -0.2447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 16.380 12.968 -67.987 REMARK 3 T TENSOR REMARK 3 T11: 0.5699 T22: 0.5776 REMARK 3 T33: 0.3419 T12: -0.3242 REMARK 3 T13: -0.1637 T23: 0.2287 REMARK 3 L TENSOR REMARK 3 L11: 2.8968 L22: 7.9660 REMARK 3 L33: 9.9763 L12: -1.2159 REMARK 3 L13: 1.4107 L23: -6.9615 REMARK 3 S TENSOR REMARK 3 S11: -0.0743 S12: -0.8210 S13: -0.2813 REMARK 3 S21: 1.4091 S22: 0.1143 S23: 0.4832 REMARK 3 S31: -1.1165 S32: -0.5180 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 160 REMARK 3 RESIDUE RANGE : A 195 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 12.125 5.218 -42.289 REMARK 3 T TENSOR REMARK 3 T11: 0.4138 T22: 0.4419 REMARK 3 T33: 0.1417 T12: -0.3964 REMARK 3 T13: -0.2245 T23: 0.2469 REMARK 3 L TENSOR REMARK 3 L11: 3.2757 L22: 3.3278 REMARK 3 L33: 3.3037 L12: 1.2769 REMARK 3 L13: -1.1182 L23: -0.4806 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: 0.0563 S13: -0.0655 REMARK 3 S21: -0.1539 S22: 0.0435 S23: 0.0281 REMARK 3 S31: 0.2911 S32: 0.1446 S33: 0.0838 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 23.860 39.944 -64.179 REMARK 3 T TENSOR REMARK 3 T11: 0.7459 T22: 0.7065 REMARK 3 T33: 0.4535 T12: -0.3845 REMARK 3 T13: -0.2338 T23: 0.1730 REMARK 3 L TENSOR REMARK 3 L11: 5.7691 L22: 0.8283 REMARK 3 L33: 12.9218 L12: -1.0343 REMARK 3 L13: -6.4722 L23: 2.9988 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.6712 S13: 0.2241 REMARK 3 S21: -0.2103 S22: 0.1756 S23: -0.0193 REMARK 3 S31: -0.6047 S32: 0.4734 S33: -0.2431 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 21.310 13.004 -56.120 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.2202 REMARK 3 T33: 0.2945 T12: -0.0559 REMARK 3 T13: -0.0402 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.2333 L22: 0.6705 REMARK 3 L33: 9.5774 L12: -0.9810 REMARK 3 L13: -4.7766 L23: 0.7266 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.1964 S13: -0.0596 REMARK 3 S21: -0.1967 S22: -0.1678 S23: -0.2241 REMARK 3 S31: 0.0256 S32: 0.0461 S33: 0.0846 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 160 REMARK 3 RESIDUE RANGE : B 195 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): 26.359 21.111 -83.548 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.4917 REMARK 3 T33: 0.1346 T12: -0.3997 REMARK 3 T13: -0.2129 T23: 0.2567 REMARK 3 L TENSOR REMARK 3 L11: 3.0701 L22: 3.9469 REMARK 3 L33: 4.0677 L12: 1.4849 REMARK 3 L13: -0.5151 L23: -1.6973 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.0876 S13: -0.0284 REMARK 3 S21: 0.0988 S22: -0.1816 S23: -0.0838 REMARK 3 S31: 0.0599 S32: 0.3494 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 93 REMARK 3 ORIGIN FOR THE GROUP (A): -18.205 -35.823 -14.622 REMARK 3 T TENSOR REMARK 3 T11: 0.7937 T22: 0.6299 REMARK 3 T33: 0.3996 T12: -0.4412 REMARK 3 T13: -0.0845 T23: 0.2514 REMARK 3 L TENSOR REMARK 3 L11: 7.0597 L22: 3.0927 REMARK 3 L33: 8.1042 L12: -1.7311 REMARK 3 L13: 5.2314 L23: -2.8488 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: -0.7722 S13: -0.0723 REMARK 3 S21: 0.0944 S22: 0.2381 S23: -0.0855 REMARK 3 S31: 0.6769 S32: -0.4114 S33: -0.1704 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 161 C 193 REMARK 3 ORIGIN FOR THE GROUP (A): -13.364 -11.889 -8.109 REMARK 3 T TENSOR REMARK 3 T11: 0.5327 T22: 0.7483 REMARK 3 T33: 0.4917 T12: -0.1179 REMARK 3 T13: -0.2810 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 5.1204 L22: 1.0495 REMARK 3 L33: 13.8209 L12: 2.0352 REMARK 3 L13: 5.1733 L23: 1.2553 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: 1.0900 S13: -0.5536 REMARK 3 S21: -0.3511 S22: 0.2697 S23: -0.1261 REMARK 3 S31: 0.3031 S32: 1.5556 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 94 C 160 REMARK 3 RESIDUE RANGE : C 195 C 294 REMARK 3 ORIGIN FOR THE GROUP (A): -20.526 -17.010 -34.103 REMARK 3 T TENSOR REMARK 3 T11: 0.3286 T22: 0.4655 REMARK 3 T33: 0.1521 T12: -0.3605 REMARK 3 T13: -0.2209 T23: 0.2503 REMARK 3 L TENSOR REMARK 3 L11: 2.6913 L22: 3.1204 REMARK 3 L33: 3.9251 L12: 1.3557 REMARK 3 L13: 0.3452 L23: 1.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.0685 S13: -0.0007 REMARK 3 S21: -0.0077 S22: -0.1184 S23: 0.0793 REMARK 3 S31: -0.1713 S32: -0.3256 S33: 0.0697 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 8 D 93 REMARK 3 ORIGIN FOR THE GROUP (A): 12.348 -0.848 -11.924 REMARK 3 T TENSOR REMARK 3 T11: 0.8045 T22: 0.8291 REMARK 3 T33: 0.4365 T12: -0.4233 REMARK 3 T13: -0.2041 T23: 0.2620 REMARK 3 L TENSOR REMARK 3 L11: 1.7721 L22: 6.8532 REMARK 3 L33: 11.7044 L12: -2.0306 REMARK 3 L13: -4.3143 L23: 6.6159 REMARK 3 S TENSOR REMARK 3 S11: 0.4202 S12: -0.2323 S13: 0.0463 REMARK 3 S21: -0.8861 S22: -0.1544 S23: -0.2369 REMARK 3 S31: -0.6865 S32: 0.4631 S33: -0.2658 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 161 D 193 REMARK 3 ORIGIN FOR THE GROUP (A): -13.495 -7.525 -19.778 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.3846 REMARK 3 T33: 0.2842 T12: -0.0339 REMARK 3 T13: -0.0740 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1476 L22: 3.1535 REMARK 3 L33: 8.5321 L12: -0.0167 REMARK 3 L13: -0.7533 L23: 3.5590 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.0705 S13: 0.0690 REMARK 3 S21: 0.1289 S22: 0.1181 S23: 0.0198 REMARK 3 S31: 0.0749 S32: 0.0511 S33: -0.1093 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 94 D 160 REMARK 3 RESIDUE RANGE : D 195 D 294 REMARK 3 ORIGIN FOR THE GROUP (A): -6.619 -0.877 7.443 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.4046 REMARK 3 T33: 0.1362 T12: -0.3753 REMARK 3 T13: -0.2189 T23: 0.2211 REMARK 3 L TENSOR REMARK 3 L11: 3.3152 L22: 3.3391 REMARK 3 L33: 3.2748 L12: 1.5430 REMARK 3 L13: 1.2853 L23: 0.7456 REMARK 3 S TENSOR REMARK 3 S11: -0.1556 S12: 0.0749 S13: 0.0377 REMARK 3 S21: -0.1257 S22: 0.0540 S23: 0.0264 REMARK 3 S31: -0.3035 S32: -0.0935 S33: 0.1016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7L26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 98.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 8.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED STUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNDISCLOSED, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 TYR A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 157 REMARK 465 ILE A 158 REMARK 465 SER A 159 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 TYR B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 157 REMARK 465 ILE B 158 REMARK 465 ARG B 168 REMARK 465 ARG B 169 REMARK 465 LEU B 170 REMARK 465 ALA B 171 REMARK 465 PHE B 172 REMARK 465 GLY C 26 REMARK 465 THR C 27 REMARK 465 TYR C 28 REMARK 465 GLY C 29 REMARK 465 GLY C 157 REMARK 465 ILE C 158 REMARK 465 SER C 159 REMARK 465 GLY D 25 REMARK 465 GLY D 26 REMARK 465 THR D 27 REMARK 465 TYR D 28 REMARK 465 GLY D 29 REMARK 465 GLY D 157 REMARK 465 ILE D 158 REMARK 465 ALA D 164 REMARK 465 THR D 165 REMARK 465 LEU D 166 REMARK 465 ALA D 167 REMARK 465 ARG D 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 191 CB SG REMARK 470 CYS B 191 CB SG REMARK 470 CYS C 191 CB SG REMARK 470 CYS D 191 CB SG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 14 CZ NH1 NH2 REMARK 480 ASP A 18 CG OD1 OD2 REMARK 480 GLN A 21 CD OE1 NE2 REMARK 480 ARG A 22 CD NE CZ NH1 NH2 REMARK 480 LYS A 33 NZ REMARK 480 LYS A 37 CE NZ REMARK 480 VAL A 38 CG1 CG2 REMARK 480 LYS A 49 CE NZ REMARK 480 ASP A 53 CG OD1 OD2 REMARK 480 GLN A 60 CG CD OE1 NE2 REMARK 480 GLU A 62 CD OE1 OE2 REMARK 480 ILE A 63 CD1 REMARK 480 LEU A 64 CD1 CD2 REMARK 480 ILE A 65 CD1 REMARK 480 LYS A 67 CD CE NZ REMARK 480 ARG A 70 NE CZ NH1 NH2 REMARK 480 GLN A 85 CD OE1 NE2 REMARK 480 ILE A 89 CD1 REMARK 480 LYS A 133 CE NZ REMARK 480 ILE A 162 CG1 CG2 CD1 REMARK 480 THR A 165 OG1 CG2 REMARK 480 ARG A 168 NE CZ NH1 NH2 REMARK 480 ILE A 173 CD1 REMARK 480 LYS A 189 CE NZ REMARK 480 LYS A 252 NZ REMARK 480 LYS A 257 CD CE NZ REMARK 480 LYS A 260 CE NZ REMARK 480 LYS A 261 CE NZ REMARK 480 GLN A 272 CG CD OE1 NE2 REMARK 480 LYS A 290 CD CE NZ REMARK 480 LYS A 292 CE NZ REMARK 480 ARG B 11 CZ NH1 NH2 REMARK 480 ARG B 14 CD NE CZ NH1 NH2 REMARK 480 HIS B 16 CG ND1 CD2 CE1 NE2 REMARK 480 ASP B 18 CG OD1 OD2 REMARK 480 LEU B 20 CG CD1 CD2 REMARK 480 ARG B 22 CZ NH1 NH2 REMARK 480 LYS B 33 CD CE NZ REMARK 480 LYS B 37 CE NZ REMARK 480 VAL B 38 CG1 CG2 REMARK 480 LEU B 42 CD1 CD2 REMARK 480 GLU B 51 CG CD OE1 OE2 REMARK 480 ASP B 53 CG OD1 OD2 REMARK 480 LYS B 61 CD CE NZ REMARK 480 GLU B 62 CD OE1 OE2 REMARK 480 ILE B 63 CD1 REMARK 480 LEU B 64 CG CD1 CD2 REMARK 480 ILE B 65 CG1 CG2 CD1 REMARK 480 LEU B 66 CG CD1 CD2 REMARK 480 LYS B 67 CD CE NZ REMARK 480 THR B 68 OG1 CG2 REMARK 480 ARG B 70 CZ NH1 NH2 REMARK 480 LEU B 82 CG CD1 CD2 REMARK 480 GLN B 85 CG CD OE1 NE2 REMARK 480 LYS B 86 NZ REMARK 480 LYS B 132 NZ REMARK 480 LYS B 133 NZ REMARK 480 SER B 159 OG REMARK 480 GLN B 161 CG CD OE1 NE2 REMARK 480 ILE B 162 CG1 CG2 CD1 REMARK 480 THR B 165 OG1 CG2 REMARK 480 LEU B 166 CD1 CD2 REMARK 480 LYS B 189 CD CE NZ REMARK 480 LYS B 240 CE NZ REMARK 480 LYS B 252 NZ REMARK 480 LYS B 257 CD CE NZ REMARK 480 LYS B 260 CE NZ REMARK 480 LYS B 267 CE NZ REMARK 480 GLN B 272 CD OE1 NE2 REMARK 480 LYS B 292 CE NZ REMARK 480 ILE C 8 CD1 REMARK 480 ARG C 14 NE CZ NH1 NH2 REMARK 480 ARG C 22 CZ NH1 NH2 REMARK 480 LYS C 37 NZ REMARK 480 VAL C 38 CG1 CG2 REMARK 480 LEU C 42 CD1 CD2 REMARK 480 LYS C 49 CD CE NZ REMARK 480 GLU C 51 CG CD OE1 OE2 REMARK 480 ASP C 53 CG OD1 OD2 REMARK 480 GLN C 60 CD OE1 NE2 REMARK 480 LYS C 61 CE NZ REMARK 480 GLU C 62 CD OE1 OE2 REMARK 480 ILE C 63 CG1 CG2 CD1 REMARK 480 LEU C 64 CG CD1 CD2 REMARK 480 ILE C 65 CG1 CG2 CD1 REMARK 480 LYS C 67 CD CE NZ REMARK 480 ARG C 70 CZ NH1 NH2 REMARK 480 GLN C 85 CG CD OE1 NE2 REMARK 480 LYS C 132 NZ REMARK 480 LYS C 133 CD CE NZ REMARK 480 GLN C 161 CD OE1 NE2 REMARK 480 ILE C 162 CG1 CG2 CD1 REMARK 480 ARG C 168 NE CZ NH1 NH2 REMARK 480 ILE C 173 CD1 REMARK 480 LYS C 189 CE NZ REMARK 480 LYS C 238 CE NZ REMARK 480 LYS C 240 CE NZ REMARK 480 LYS C 252 NZ REMARK 480 LYS C 257 CE NZ REMARK 480 LYS C 260 CE NZ REMARK 480 LYS C 261 CE NZ REMARK 480 LYS C 267 CE NZ REMARK 480 LYS C 292 CE NZ REMARK 480 ARG D 11 CZ NH1 NH2 REMARK 480 ARG D 14 CD NE CZ NH1 NH2 REMARK 480 HIS D 16 CG ND1 CD2 CE1 NE2 REMARK 480 ASP D 18 CG OD1 OD2 REMARK 480 GLN D 21 CD OE1 NE2 REMARK 480 ARG D 22 CZ NH1 NH2 REMARK 480 LYS D 33 CD CE NZ REMARK 480 VAL D 38 CG1 CG2 REMARK 480 LEU D 42 CD1 CD2 REMARK 480 GLU D 51 CG CD OE1 OE2 REMARK 480 ASP D 53 CG OD1 OD2 REMARK 480 VAL D 56 CG1 CG2 REMARK 480 GLN D 60 CD OE1 NE2 REMARK 480 LYS D 61 CD CE NZ REMARK 480 LEU D 64 CG CD1 CD2 REMARK 480 ILE D 65 CD1 REMARK 480 LEU D 66 CD1 CD2 REMARK 480 LYS D 67 CD CE NZ REMARK 480 LEU D 82 CD1 CD2 REMARK 480 GLN D 85 CD OE1 NE2 REMARK 480 LYS D 132 NZ REMARK 480 LYS D 133 NZ REMARK 480 ILE D 162 CG1 CG2 CD1 REMARK 480 LYS D 189 CD CE NZ REMARK 480 LYS D 240 CE NZ REMARK 480 LYS D 252 NZ REMARK 480 LYS D 257 CD CE NZ REMARK 480 LYS D 261 CE NZ REMARK 480 LYS D 267 CE NZ REMARK 480 LYS D 292 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 165 CB THR A 165 OG1 -0.124 REMARK 500 ARG B 22 NE ARG B 22 CZ 0.122 REMARK 500 GLY C 25 C GLY C 25 O 0.132 REMARK 500 ARG D 22 NE ARG D 22 CZ 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 LEU B 166 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 222 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 222 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 22 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP D 155 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 222 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 51.48 -141.19 REMARK 500 LEU A 20 -50.60 -127.93 REMARK 500 GLU A 51 -85.39 -85.97 REMARK 500 PRO A 52 -73.37 -81.61 REMARK 500 ARG A 136 -28.34 86.79 REMARK 500 GLN A 161 42.33 -94.24 REMARK 500 PHE A 172 -53.74 168.41 REMARK 500 LEU A 255 42.10 -89.44 REMARK 500 GLU B 51 -87.90 -86.19 REMARK 500 PRO B 52 -73.80 -82.98 REMARK 500 ARG B 136 -29.66 86.88 REMARK 500 GLN B 161 35.66 -88.65 REMARK 500 CYS B 191 -0.51 66.34 REMARK 500 LEU B 255 43.87 -89.97 REMARK 500 ASN C 10 51.29 -141.18 REMARK 500 GLU C 51 -86.74 -86.08 REMARK 500 PRO C 52 -74.72 -83.14 REMARK 500 ARG C 136 -26.68 84.96 REMARK 500 PHE C 172 -52.87 167.40 REMARK 500 CYS C 191 -2.98 67.42 REMARK 500 LEU C 255 41.80 -88.81 REMARK 500 LEU D 20 -50.57 -130.31 REMARK 500 GLU D 51 -87.70 -85.09 REMARK 500 PRO D 52 -74.15 -83.59 REMARK 500 ARG D 136 -28.41 85.02 REMARK 500 ALA D 171 83.45 -67.58 REMARK 500 CYS D 191 -0.87 66.07 REMARK 500 LEU D 255 43.54 -91.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XHM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XHM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XHM C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XHM D 301 DBREF 7L26 A 8 294 UNP Q92918 M4K1_HUMAN 8 294 DBREF 7L26 B 8 294 UNP Q92918 M4K1_HUMAN 8 294 DBREF 7L26 C 8 294 UNP Q92918 M4K1_HUMAN 8 294 DBREF 7L26 D 8 294 UNP Q92918 M4K1_HUMAN 8 294 SEQADV 7L26 ALA A 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L26 CYS A 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQADV 7L26 ALA B 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L26 CYS B 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQADV 7L26 ALA C 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L26 CYS C 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQADV 7L26 ALA D 171 UNP Q92918 SER 171 ENGINEERED MUTATION SEQADV 7L26 CYS D 191 UNP Q92918 GLY 191 ENGINEERED MUTATION SEQRES 1 A 287 ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 A 287 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 A 287 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 A 287 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 A 287 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 A 287 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 A 287 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 A 287 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 A 287 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 A 287 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 A 287 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 A 287 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 A 287 ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY THR PRO SEQRES 14 A 287 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 A 287 GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 A 287 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 A 287 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 A 287 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 A 287 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 A 287 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 A 287 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 A 287 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 A 287 PRO SEQRES 1 B 287 ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 B 287 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 B 287 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 B 287 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 B 287 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 B 287 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 B 287 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 B 287 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 B 287 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 B 287 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 B 287 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 B 287 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 B 287 ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY THR PRO SEQRES 14 B 287 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 B 287 GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 B 287 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 B 287 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 B 287 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 B 287 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 B 287 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 B 287 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 B 287 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 B 287 PRO SEQRES 1 C 287 ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 C 287 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 C 287 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 C 287 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 C 287 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 C 287 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 C 287 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 C 287 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 C 287 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 C 287 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 C 287 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 C 287 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 C 287 ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY THR PRO SEQRES 14 C 287 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 C 287 GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 C 287 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 C 287 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 C 287 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 C 287 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 C 287 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 C 287 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 C 287 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 C 287 PRO SEQRES 1 D 287 ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 D 287 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 D 287 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 D 287 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 D 287 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 D 287 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 D 287 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 D 287 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 D 287 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 D 287 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 D 287 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 D 287 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 D 287 ALA THR LEU ALA ARG ARG LEU ALA PHE ILE GLY THR PRO SEQRES 14 D 287 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 D 287 GLY CYS TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 D 287 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 D 287 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 D 287 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 D 287 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 D 287 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 D 287 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 D 287 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 D 287 PRO HET XHM A 301 32 HET XHM B 301 32 HET XHM C 301 32 HET XHM D 301 32 HETNAM XHM 6-(2-FLUORO-6-METHYLPHENYL)-1-[4-(4-METHYLPIPERAZIN-1- HETNAM 2 XHM YL)PHENYL]-1H-INDAZOLE-5-CARBONITRILE FORMUL 5 XHM 4(C26 H24 F N5) FORMUL 9 HOH *230(H2 O) HELIX 1 AA1 ASP A 12 ASP A 15 5 4 HELIX 2 AA2 ASP A 55 THR A 58 5 4 HELIX 3 AA3 LEU A 59 CYS A 69 1 11 HELIX 4 AA4 SER A 98 GLY A 107 1 10 HELIX 5 AA5 SER A 110 GLN A 131 1 22 HELIX 6 AA6 LYS A 139 ALA A 141 5 3 HELIX 7 AA7 ILE A 162 ALA A 171 1 10 HELIX 8 AA8 THR A 175 MET A 179 5 5 HELIX 9 AA9 ALA A 180 GLY A 190 1 11 HELIX 10 AB1 LEU A 195 LEU A 211 1 17 HELIX 11 AB2 HIS A 219 THR A 228 1 10 HELIX 12 AB3 SER A 244 LEU A 255 1 12 HELIX 13 AB4 SER A 264 LEU A 269 1 6 HELIX 14 AB5 HIS A 271 GLN A 276 1 6 HELIX 15 AB6 ARG A 281 ASN A 293 1 13 HELIX 16 AB7 ASP B 12 ASP B 15 5 4 HELIX 17 AB8 ASP B 55 THR B 58 5 4 HELIX 18 AB9 LEU B 59 CYS B 69 1 11 HELIX 19 AC1 SER B 98 GLY B 107 1 10 HELIX 20 AC2 SER B 110 GLN B 131 1 22 HELIX 21 AC3 LYS B 139 ALA B 141 5 3 HELIX 22 AC4 ILE B 162 ALA B 167 1 6 HELIX 23 AC5 THR B 175 MET B 179 5 5 HELIX 24 AC6 ALA B 180 GLY B 190 1 11 HELIX 25 AC7 LEU B 195 LEU B 211 1 17 HELIX 26 AC8 HIS B 219 THR B 228 1 10 HELIX 27 AC9 SER B 244 LEU B 255 1 12 HELIX 28 AD1 SER B 264 SER B 270 1 7 HELIX 29 AD2 HIS B 271 GLN B 276 1 6 HELIX 30 AD3 ARG B 281 ASN B 293 1 13 HELIX 31 AD4 ASP C 12 ASP C 15 5 4 HELIX 32 AD5 ASP C 55 THR C 58 5 4 HELIX 33 AD6 LEU C 59 CYS C 69 1 11 HELIX 34 AD7 SER C 98 GLY C 107 1 10 HELIX 35 AD8 SER C 110 GLN C 131 1 22 HELIX 36 AD9 LYS C 139 ALA C 141 5 3 HELIX 37 AE1 ILE C 162 ALA C 171 1 10 HELIX 38 AE2 THR C 175 MET C 179 5 5 HELIX 39 AE3 ALA C 180 GLY C 190 1 11 HELIX 40 AE4 LEU C 195 LEU C 211 1 17 HELIX 41 AE5 HIS C 219 THR C 228 1 10 HELIX 42 AE6 SER C 244 LEU C 255 1 12 HELIX 43 AE7 SER C 264 SER C 270 1 7 HELIX 44 AE8 HIS C 271 GLN C 276 1 6 HELIX 45 AE9 ARG C 281 ASN C 293 1 13 HELIX 46 AF1 ASP D 12 ASP D 15 5 4 HELIX 47 AF2 ASP D 55 THR D 58 5 4 HELIX 48 AF3 LEU D 59 CYS D 69 1 11 HELIX 49 AF4 SER D 98 GLY D 107 1 10 HELIX 50 AF5 SER D 110 GLN D 131 1 22 HELIX 51 AF6 LYS D 139 ALA D 141 5 3 HELIX 52 AF7 THR D 175 MET D 179 5 5 HELIX 53 AF8 ALA D 180 GLY D 190 1 11 HELIX 54 AF9 LEU D 195 LEU D 211 1 17 HELIX 55 AG1 HIS D 219 THR D 228 1 10 HELIX 56 AG2 SER D 244 LEU D 255 1 12 HELIX 57 AG3 SER D 264 SER D 270 1 7 HELIX 58 AG4 HIS D 271 GLN D 276 1 6 HELIX 59 AG5 ARG D 281 ASN D 293 1 13 SHEET 1 AA1 5 TYR A 17 ARG A 22 0 SHEET 2 AA1 5 VAL A 31 ASP A 36 -1 O LYS A 33 N GLN A 21 SHEET 3 AA1 5 LEU A 42 LYS A 49 -1 O VAL A 43 N ALA A 34 SHEET 4 AA1 5 LYS A 86 GLU A 92 -1 O ILE A 89 N LYS A 46 SHEET 5 AA1 5 TYR A 77 TRP A 83 -1 N TYR A 81 O TRP A 88 SHEET 1 AA2 2 ILE A 143 ILE A 145 0 SHEET 2 AA2 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 5 TYR B 17 ARG B 22 0 SHEET 2 AA3 5 VAL B 31 ASP B 36 -1 O LYS B 33 N GLN B 21 SHEET 3 AA3 5 LEU B 42 LYS B 49 -1 O VAL B 43 N ALA B 34 SHEET 4 AA3 5 LYS B 86 GLU B 92 -1 O ILE B 89 N LYS B 46 SHEET 5 AA3 5 TYR B 77 LEU B 82 -1 N TYR B 81 O TRP B 88 SHEET 1 AA4 2 ILE B 143 ILE B 145 0 SHEET 2 AA4 2 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 SHEET 1 AA5 5 TYR C 17 GLY C 24 0 SHEET 2 AA5 5 VAL C 31 ASP C 36 -1 O LYS C 33 N GLN C 21 SHEET 3 AA5 5 LEU C 42 LYS C 49 -1 O VAL C 43 N ALA C 34 SHEET 4 AA5 5 LYS C 86 GLU C 92 -1 O ILE C 89 N LYS C 46 SHEET 5 AA5 5 TYR C 77 LEU C 82 -1 N TYR C 81 O TRP C 88 SHEET 1 AA6 2 ILE C 143 ILE C 145 0 SHEET 2 AA6 2 VAL C 151 LEU C 153 -1 O ARG C 152 N LEU C 144 SHEET 1 AA7 5 TYR D 17 ARG D 22 0 SHEET 2 AA7 5 VAL D 31 ASP D 36 -1 O LYS D 33 N GLN D 21 SHEET 3 AA7 5 LEU D 42 LYS D 49 -1 O VAL D 43 N ALA D 34 SHEET 4 AA7 5 LYS D 86 GLU D 92 -1 O ILE D 89 N LYS D 46 SHEET 5 AA7 5 TYR D 77 LEU D 82 -1 N TYR D 81 O TRP D 88 SHEET 1 AA8 2 ILE D 143 ILE D 145 0 SHEET 2 AA8 2 VAL D 151 LEU D 153 -1 O ARG D 152 N LEU D 144 SITE 1 AC1 12 LEU A 23 VAL A 31 ALA A 44 LYS A 46 SITE 2 AC1 12 MET A 91 GLU A 92 CYS A 94 GLY A 95 SITE 3 AC1 12 GLY A 97 ALA A 141 LEU A 144 ASP A 155 SITE 1 AC2 11 LEU B 23 VAL B 31 LYS B 46 MET B 91 SITE 2 AC2 11 GLU B 92 CYS B 94 GLY B 95 GLY B 97 SITE 3 AC2 11 ALA B 141 LEU B 144 ASP B 155 SITE 1 AC3 12 LEU C 23 VAL C 31 LYS C 46 MET C 91 SITE 2 AC3 12 GLU C 92 CYS C 94 GLY C 95 GLY C 97 SITE 3 AC3 12 ASP C 101 ALA C 141 LEU C 144 ASP C 155 SITE 1 AC4 10 LEU D 23 VAL D 31 LYS D 46 MET D 91 SITE 2 AC4 10 GLU D 92 CYS D 94 GLY D 97 ALA D 141 SITE 3 AC4 10 LEU D 144 ASP D 155 CRYST1 58.138 58.168 98.955 89.84 90.13 97.60 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017200 0.002294 0.000032 0.00000 SCALE2 0.000000 0.017344 -0.000043 0.00000 SCALE3 0.000000 0.000000 0.010106 0.00000