HEADER TRANSFERASE 17-DEC-20 7L3L TITLE STRUCTURE OF TRAF5 AND TRAF6 RING HETERO DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 5; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: RING FINGER PROTEIN 84; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 6; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: E3 UBIQUITIN-PROTEIN LIGASE TRAF6,INTERLEUKIN-1 SIGNAL COMPND 10 TRANSDUCER,RING FINGER PROTEIN 85,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 11 TRAF6; COMPND 12 EC: 2.3.2.27; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAF5, RNF84; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TRAF6, RNF85; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DAS,A.J.MIDDLETON,P.PADALA,C.L.DAY REVDAT 2 18-OCT-23 7L3L 1 REMARK REVDAT 1 17-FEB-21 7L3L 0 JRNL AUTH A.DAS,A.J.MIDDLETON,P.PADALA,E.C.LEDGERWOOD,P.D.MACE,C.L.DAY JRNL TITL THE STRUCTURE AND UBIQUITIN BINDING PROPERTIES OF TRAF RING JRNL TITL 2 HETERODIMERS. JRNL REF J.MOL.BIOL. 66844 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33539883 JRNL DOI 10.1016/J.JMB.2021.166844 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.3377 - 4.2452 0.95 2692 134 0.1747 0.2067 REMARK 3 2 3.7110 - 3.3728 0.95 2642 143 0.2242 0.2794 REMARK 3 3 3.3728 - 3.1317 0.95 2688 130 0.2561 0.2791 REMARK 3 4 3.1317 - 2.9475 0.95 2656 136 0.2896 0.3529 REMARK 3 5 2.9475 - 2.8001 0.94 2651 170 0.2963 0.3561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3960 REMARK 3 ANGLE : 0.798 5335 REMARK 3 CHIRALITY : 0.049 577 REMARK 3 PLANARITY : 0.005 704 REMARK 3 DIHEDRAL : 21.746 1514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.254 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04977 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43950 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS (PH 8), 0.2 M NACL, 20 % REMARK 280 PEG 6000, PH 8.0, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.03100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 23 REMARK 465 SER C 140 REMARK 465 ASN C 141 REMARK 465 GLU C 142 REMARK 465 LYS C 143 REMARK 465 PHE C 163 REMARK 465 ARG C 164 REMARK 465 GLU D 52 REMARK 465 ILE D 53 REMARK 465 LYS D 133 REMARK 465 GLU D 137 REMARK 465 GLY D 138 REMARK 465 HIS D 141 REMARK 465 LYS D 142 REMARK 465 MET D 143 REMARK 465 HIS D 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 146 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 49 -3.26 68.27 REMARK 500 ASN A 76 18.91 53.70 REMARK 500 THR A 77 -77.67 58.70 REMARK 500 VAL A 83 -60.12 -102.64 REMARK 500 LYS A 143 -70.35 -118.58 REMARK 500 CYS A 144 66.83 33.33 REMARK 500 SER A 158 -75.23 -64.84 REMARK 500 ALA A 159 -13.63 -143.31 REMARK 500 ASP B 57 77.23 -114.58 REMARK 500 GLU B 59 78.39 65.47 REMARK 500 HIS C 49 -8.40 69.66 REMARK 500 LYS C 85 14.93 58.42 REMARK 500 ASP C 152 31.27 -97.70 REMARK 500 HIS C 156 -76.96 -58.57 REMARK 500 SER C 160 -150.98 -152.52 REMARK 500 CYS C 161 122.47 -38.63 REMARK 500 ASP D 57 79.45 -104.78 REMARK 500 GLU D 59 73.81 63.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 112 ALA A 113 -139.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 CYS A 48 SG 109.6 REMARK 620 3 CYS A 65 SG 124.1 95.9 REMARK 620 4 CYS A 68 SG 118.3 108.8 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 60 SG REMARK 620 2 HIS A 62 ND1 111.2 REMARK 620 3 CYS A 81 SG 98.8 101.1 REMARK 620 4 ASP A 84 OD2 153.6 84.1 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 CYS A 116 SG 115.7 REMARK 620 3 HIS A 128 NE2 108.1 102.4 REMARK 620 4 CYS A 132 SG 133.0 98.0 94.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 144 SG REMARK 620 2 CYS A 161 SG 95.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 70 SG REMARK 620 2 CYS B 73 SG 103.0 REMARK 620 3 CYS B 90 SG 98.9 107.4 REMARK 620 4 CYS B 93 SG 126.0 106.4 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 85 SG REMARK 620 2 CYS B 105 SG 99.3 REMARK 620 3 ASP B 108 OD1 89.3 85.9 REMARK 620 4 ASP B 108 OD2 91.6 138.3 53.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 134 SG REMARK 620 2 CYS B 139 SG 136.4 REMARK 620 3 HIS B 151 NE2 101.6 101.2 REMARK 620 4 CYS B 155 SG 113.7 105.1 84.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 45 SG REMARK 620 2 CYS C 65 SG 112.2 REMARK 620 3 CYS C 68 SG 107.2 110.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 60 SG REMARK 620 2 HIS C 62 ND1 95.5 REMARK 620 3 CYS C 81 SG 114.9 117.6 REMARK 620 4 ASP C 84 OD2 98.3 96.8 127.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 110 SG REMARK 620 2 CYS C 116 SG 106.4 REMARK 620 3 HIS C 128 NE2 89.2 104.6 REMARK 620 4 CYS C 132 SG 115.7 122.7 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 139 SG REMARK 620 2 CYS C 161 SG 96.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 70 SG REMARK 620 2 CYS D 73 SG 94.8 REMARK 620 3 CYS D 90 SG 111.0 109.5 REMARK 620 4 CYS D 93 SG 116.4 104.0 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 85 SG REMARK 620 2 HIS D 87 ND1 88.1 REMARK 620 3 CYS D 105 SG 88.0 116.2 REMARK 620 4 ASP D 108 OD1 125.9 132.9 98.3 REMARK 620 5 ASP D 108 OD2 110.9 83.1 154.0 56.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 134 SG REMARK 620 2 CYS D 139 SG 89.4 REMARK 620 N 1 DBREF 7L3L A 23 164 UNP O00463 TRAF5_HUMAN 23 164 DBREF 7L3L B 52 158 UNP Q9Y4K3 TRAF6_HUMAN 52 158 DBREF 7L3L C 23 164 UNP O00463 TRAF5_HUMAN 23 164 DBREF 7L3L D 52 158 UNP Q9Y4K3 TRAF6_HUMAN 52 158 SEQRES 1 A 142 ILE SER LEU ASP PHE GLU PRO SER ILE GLU TYR GLN PHE SEQRES 2 A 142 VAL GLU ARG LEU GLU GLU ARG TYR LYS CYS ALA PHE CYS SEQRES 3 A 142 HIS SER VAL LEU HIS ASN PRO HIS GLN THR GLY CYS GLY SEQRES 4 A 142 HIS ARG PHE CYS GLN HIS CYS ILE LEU SER LEU ARG GLU SEQRES 5 A 142 LEU ASN THR VAL PRO ILE CYS PRO VAL ASP LYS GLU VAL SEQRES 6 A 142 ILE LYS SER GLN GLU VAL PHE LYS ASP ASN CYS CYS LYS SEQRES 7 A 142 ARG GLU VAL LEU ASN LEU TYR VAL TYR CYS SER ASN ALA SEQRES 8 A 142 PRO GLY CYS ASN ALA LYS VAL ILE LEU GLY ARG TYR GLN SEQRES 9 A 142 ASP HIS LEU GLN GLN CYS LEU PHE GLN PRO VAL GLN CYS SEQRES 10 A 142 SER ASN GLU LYS CYS ARG GLU PRO VAL LEU ARG LYS ASP SEQRES 11 A 142 LEU LYS GLU HIS LEU SER ALA SER CYS GLN PHE ARG SEQRES 1 B 107 GLU ILE GLN GLY TYR ASP VAL GLU PHE ASP PRO PRO LEU SEQRES 2 B 107 GLU SER LYS TYR GLU CYS PRO ILE CYS LEU MET ALA LEU SEQRES 3 B 107 ARG GLU ALA VAL GLN THR PRO CYS GLY HIS ARG PHE CYS SEQRES 4 B 107 LYS ALA CYS ILE ILE LYS SER ILE ARG ASP ALA GLY HIS SEQRES 5 B 107 LYS CYS PRO VAL ASP ASN GLU ILE LEU LEU GLU ASN GLN SEQRES 6 B 107 LEU PHE PRO ASP ASN PHE ALA LYS ARG GLU ILE LEU SER SEQRES 7 B 107 LEU MET VAL LYS CYS PRO ASN GLU GLY CYS LEU HIS LYS SEQRES 8 B 107 MET GLU LEU ARG HIS LEU GLU ASP HIS GLN ALA HIS CYS SEQRES 9 B 107 GLU PHE ALA SEQRES 1 C 142 ILE SER LEU ASP PHE GLU PRO SER ILE GLU TYR GLN PHE SEQRES 2 C 142 VAL GLU ARG LEU GLU GLU ARG TYR LYS CYS ALA PHE CYS SEQRES 3 C 142 HIS SER VAL LEU HIS ASN PRO HIS GLN THR GLY CYS GLY SEQRES 4 C 142 HIS ARG PHE CYS GLN HIS CYS ILE LEU SER LEU ARG GLU SEQRES 5 C 142 LEU ASN THR VAL PRO ILE CYS PRO VAL ASP LYS GLU VAL SEQRES 6 C 142 ILE LYS SER GLN GLU VAL PHE LYS ASP ASN CYS CYS LYS SEQRES 7 C 142 ARG GLU VAL LEU ASN LEU TYR VAL TYR CYS SER ASN ALA SEQRES 8 C 142 PRO GLY CYS ASN ALA LYS VAL ILE LEU GLY ARG TYR GLN SEQRES 9 C 142 ASP HIS LEU GLN GLN CYS LEU PHE GLN PRO VAL GLN CYS SEQRES 10 C 142 SER ASN GLU LYS CYS ARG GLU PRO VAL LEU ARG LYS ASP SEQRES 11 C 142 LEU LYS GLU HIS LEU SER ALA SER CYS GLN PHE ARG SEQRES 1 D 107 GLU ILE GLN GLY TYR ASP VAL GLU PHE ASP PRO PRO LEU SEQRES 2 D 107 GLU SER LYS TYR GLU CYS PRO ILE CYS LEU MET ALA LEU SEQRES 3 D 107 ARG GLU ALA VAL GLN THR PRO CYS GLY HIS ARG PHE CYS SEQRES 4 D 107 LYS ALA CYS ILE ILE LYS SER ILE ARG ASP ALA GLY HIS SEQRES 5 D 107 LYS CYS PRO VAL ASP ASN GLU ILE LEU LEU GLU ASN GLN SEQRES 6 D 107 LEU PHE PRO ASP ASN PHE ALA LYS ARG GLU ILE LEU SER SEQRES 7 D 107 LEU MET VAL LYS CYS PRO ASN GLU GLY CYS LEU HIS LYS SEQRES 8 D 107 MET GLU LEU ARG HIS LEU GLU ASP HIS GLN ALA HIS CYS SEQRES 9 D 107 GLU PHE ALA HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET ZN C 201 1 HET ZN C 202 1 HET ZN C 203 1 HET ZN C 204 1 HET ZN D 201 1 HET ZN D 202 1 HET ZN D 203 1 HETNAM ZN ZINC ION FORMUL 5 ZN 14(ZN 2+) HELIX 1 AA1 GLU A 40 LYS A 44 5 5 HELIX 2 AA2 CYS A 65 LEU A 75 1 11 HELIX 3 AA3 LYS A 89 VAL A 93 5 5 HELIX 4 AA4 ASP A 96 ASN A 105 1 10 HELIX 5 AA5 ARG A 124 GLN A 130 1 7 HELIX 6 AA6 LEU A 149 LYS A 154 1 6 HELIX 7 AA7 GLU B 65 GLU B 69 5 5 HELIX 8 AA8 LYS B 91 ALA B 101 1 11 HELIX 9 AA9 LEU B 113 LEU B 117 5 5 HELIX 10 AB1 ASP B 120 LEU B 130 1 11 HELIX 11 AB2 HIS B 147 ALA B 153 1 7 HELIX 12 AB3 GLU C 40 LYS C 44 5 5 HELIX 13 AB4 CYS C 65 ASN C 76 1 12 HELIX 14 AB5 LYS C 89 VAL C 93 5 5 HELIX 15 AB6 ASP C 96 ASN C 105 1 10 HELIX 16 AB7 ARG C 124 GLN C 130 1 7 HELIX 17 AB8 LEU C 153 ALA C 159 1 7 HELIX 18 AB9 GLU D 65 GLU D 69 5 5 HELIX 19 AC1 LYS D 91 ALA D 101 1 11 HELIX 20 AC2 LEU D 113 LEU D 117 5 5 HELIX 21 AC3 ASP D 120 SER D 129 1 10 HELIX 22 AC4 GLU D 144 ARG D 146 5 3 HELIX 23 AC5 HIS D 147 GLN D 152 1 6 SHEET 1 AA1 3 ARG A 63 PHE A 64 0 SHEET 2 AA1 3 HIS A 56 GLN A 57 -1 N HIS A 56 O PHE A 64 SHEET 3 AA1 3 PHE A 94 LYS A 95 -1 O PHE A 94 N GLN A 57 SHEET 1 AA2 2 TYR A 107 TYR A 109 0 SHEET 2 AA2 2 LYS A 119 ILE A 121 -1 O VAL A 120 N VAL A 108 SHEET 1 AA3 3 ARG B 88 CYS B 90 0 SHEET 2 AA3 3 ALA B 80 GLN B 82 -1 N VAL B 81 O PHE B 89 SHEET 3 AA3 3 PHE B 118 PRO B 119 -1 O PHE B 118 N GLN B 82 SHEET 1 AA4 2 MET B 131 LYS B 133 0 SHEET 2 AA4 2 LYS B 142 GLU B 144 -1 O MET B 143 N VAL B 132 SHEET 1 AA5 3 ARG C 63 PHE C 64 0 SHEET 2 AA5 3 HIS C 56 GLN C 57 -1 N HIS C 56 O PHE C 64 SHEET 3 AA5 3 PHE C 94 LYS C 95 -1 O PHE C 94 N GLN C 57 SHEET 1 AA6 2 TYR C 107 TYR C 109 0 SHEET 2 AA6 2 LYS C 119 ILE C 121 -1 O VAL C 120 N VAL C 108 SHEET 1 AA7 2 PRO C 136 VAL C 137 0 SHEET 2 AA7 2 VAL C 148 LEU C 149 -1 O VAL C 148 N VAL C 137 SHEET 1 AA8 3 ARG D 88 CYS D 90 0 SHEET 2 AA8 3 ALA D 80 GLN D 82 -1 N VAL D 81 O PHE D 89 SHEET 3 AA8 3 PHE D 118 PRO D 119 -1 O PHE D 118 N GLN D 82 LINK SG CYS A 45 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 48 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 60 ZN ZN A 202 1555 1555 2.38 LINK ND1 HIS A 62 ZN ZN A 202 1555 1555 2.28 LINK SG CYS A 65 ZN ZN A 201 1555 1555 2.43 LINK SG CYS A 68 ZN ZN A 201 1555 1555 2.71 LINK SG CYS A 81 ZN ZN A 202 1555 1555 2.38 LINK OD2 ASP A 84 ZN ZN A 202 1555 1555 1.79 LINK SG CYS A 110 ZN ZN A 203 1555 1555 2.15 LINK SG CYS A 116 ZN ZN A 203 1555 1555 2.42 LINK NE2 HIS A 128 ZN ZN A 203 1555 1555 2.19 LINK SG CYS A 132 ZN ZN A 203 1555 1555 2.18 LINK SG CYS A 144 ZN ZN A 204 1555 1555 2.27 LINK SG CYS A 161 ZN ZN A 204 1555 1555 2.66 LINK SG CYS B 70 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 73 ZN ZN B 201 1555 1555 2.27 LINK SG CYS B 85 ZN ZN B 202 1555 1555 2.47 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.27 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.32 LINK SG CYS B 105 ZN ZN B 202 1555 1555 2.23 LINK OD1 ASP B 108 ZN ZN B 202 1555 1555 2.58 LINK OD2 ASP B 108 ZN ZN B 202 1555 1555 2.20 LINK SG CYS B 134 ZN ZN B 203 1555 1555 2.47 LINK SG CYS B 139 ZN ZN B 203 1555 1555 2.38 LINK NE2 HIS B 151 ZN ZN B 203 1555 1555 2.24 LINK SG CYS B 155 ZN ZN B 203 1555 1555 2.31 LINK SG CYS C 45 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 60 ZN ZN C 202 1555 1555 2.36 LINK ND1 HIS C 62 ZN ZN C 202 1555 1555 2.24 LINK SG CYS C 65 ZN ZN C 201 1555 1555 2.53 LINK SG CYS C 68 ZN ZN C 201 1555 1555 2.28 LINK SG CYS C 81 ZN ZN C 202 1555 1555 2.18 LINK OD2 ASP C 84 ZN ZN C 202 1555 1555 2.07 LINK SG CYS C 110 ZN ZN C 203 1555 1555 2.25 LINK SG CYS C 116 ZN ZN C 203 1555 1555 2.32 LINK NE2 HIS C 128 ZN ZN C 203 1555 1555 2.09 LINK SG CYS C 132 ZN ZN C 203 1555 1555 2.30 LINK SG CYS C 139 ZN ZN C 204 1555 1555 2.52 LINK SG CYS C 161 ZN ZN C 204 1555 1555 2.21 LINK SG CYS D 70 ZN ZN D 201 1555 1555 2.41 LINK SG CYS D 73 ZN ZN D 201 1555 1555 2.42 LINK SG CYS D 85 ZN ZN D 202 1555 1555 2.15 LINK ND1 HIS D 87 ZN ZN D 202 1555 1555 2.45 LINK SG CYS D 90 ZN ZN D 201 1555 1555 2.55 LINK SG CYS D 93 ZN ZN D 201 1555 1555 2.62 LINK SG CYS D 105 ZN ZN D 202 1555 1555 2.53 LINK OD1 ASP D 108 ZN ZN D 202 1555 1555 2.25 LINK OD2 ASP D 108 ZN ZN D 202 1555 1555 2.38 LINK SG CYS D 134 ZN ZN D 203 1555 1555 2.50 LINK SG CYS D 139 ZN ZN D 203 1555 1555 2.48 CISPEP 1 ALA C 113 PRO C 114 0 -4.75 CRYST1 41.597 106.062 94.427 90.00 102.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024040 0.000000 0.005393 0.00000 SCALE2 0.000000 0.009428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010853 0.00000