HEADER LYASE 18-DEC-20 7L3V TITLE PEPCK MMQX STRUCTURE 120MS POST-MIXING WITH OXALOACETIC ACID CAVEAT 7L3V RESIDUES LYS A 70 AND LYS A 71 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7L3V IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 7L3V BETWEEN C AND N IS 1.08. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC [GTP]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK-C; COMPND 5 EC: 4.1.1.32,2.7.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T2 KEYWDS PEPCK, PHOSPHOENOLPYRUVATE CARBOXYKINASE, GLUCONEOGENESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.CLINGER,D.W.MOREAU,M.J.MCLEOD,T.HOLYOAK,R.E.THORNE REVDAT 2 18-OCT-23 7L3V 1 REMARK REVDAT 1 13-OCT-21 7L3V 0 JRNL AUTH J.A.CLINGER,D.W.MOREAU,M.J.MCLEOD,T.HOLYOAK,R.E.THORNE JRNL TITL MILLISECOND MIX-AND-QUENCH CRYSTALLOGRAPHY (MMQX) ENABLES JRNL TITL 2 TIME-RESOLVED STUDIES OF PEPCK WITH REMOTE DATA COLLECTION. JRNL REF IUCRJ V. 8 784 2021 JRNL REFN ESSN 2052-2525 JRNL PMID 34584739 JRNL DOI 10.1107/S2052252521007053 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6700 - 4.9800 1.00 2649 153 0.1787 0.1812 REMARK 3 2 4.9800 - 3.9500 1.00 2641 125 0.1393 0.1508 REMARK 3 3 3.9500 - 3.4500 1.00 2630 120 0.1511 0.1538 REMARK 3 4 3.4500 - 3.1400 1.00 2616 142 0.1635 0.1789 REMARK 3 5 3.1400 - 2.9100 1.00 2575 162 0.1780 0.1987 REMARK 3 6 2.9100 - 2.7400 1.00 2631 129 0.1848 0.1972 REMARK 3 7 2.7400 - 2.6000 1.00 2578 149 0.1875 0.2073 REMARK 3 8 2.6000 - 2.4900 1.00 2613 145 0.1876 0.2057 REMARK 3 9 2.4900 - 2.3900 1.00 2585 149 0.1848 0.2103 REMARK 3 10 2.3900 - 2.3100 1.00 2577 132 0.2001 0.2147 REMARK 3 11 2.3100 - 2.2400 0.99 2625 115 0.2539 0.3129 REMARK 3 12 2.2400 - 2.1800 1.00 2631 119 0.2652 0.3727 REMARK 3 13 2.1800 - 2.1200 1.00 2566 130 0.2401 0.3001 REMARK 3 14 2.1200 - 2.0700 1.00 2634 133 0.2610 0.3189 REMARK 3 15 2.0700 - 2.0200 0.99 2522 141 0.2759 0.2964 REMARK 3 16 2.0200 - 1.9800 0.94 2444 154 0.2841 0.3207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4924 REMARK 3 ANGLE : 1.185 6687 REMARK 3 CHIRALITY : 0.061 704 REMARK 3 PLANARITY : 0.007 871 REMARK 3 DIHEDRAL : 16.995 1846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -1.8924 -0.0285 8.1316 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.2141 REMARK 3 T33: 0.2410 T12: -0.0470 REMARK 3 T13: 0.1339 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3808 L22: 3.0826 REMARK 3 L33: 1.0522 L12: 0.1238 REMARK 3 L13: 0.2327 L23: 1.4728 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0515 S13: -0.0249 REMARK 3 S21: 0.6859 S22: -0.2019 S23: 0.4224 REMARK 3 S31: 0.3736 S32: -0.1162 S33: 0.0482 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43818 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 44.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 7L36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM MNCL2, 25MM GTP, 19% PEG 3350, REMARK 280 100MM HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.39350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 HIS A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 394 REMARK 465 ASP A 395 REMARK 465 GLU A 396 REMARK 465 ALA A 464 REMARK 465 THR A 465 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 71 CE NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 203 CE NZ REMARK 470 LYS A 204 CD CE NZ REMARK 470 TRP A 303 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 303 CZ3 CH2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 VAL A 368 CG1 REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 492 NZ REMARK 470 GLU A 576 CG CD OE1 OE2 REMARK 470 GLU A 597 CD OE1 OE2 REMARK 470 GLU A 609 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PEP A 903 MN MN A 906 1.42 REMARK 500 HZ1 LYS A 244 MN MN A 906 1.44 REMARK 500 H ASP A 374 O HOH A 1027 1.59 REMARK 500 O MET A 295 O HOH A 1001 1.92 REMARK 500 O HOH A 1144 O HOH A 1301 1.98 REMARK 500 O HOH A 1112 O HOH A 1272 2.01 REMARK 500 OG SER A 364 OG1 THR A 382 2.03 REMARK 500 O HOH A 1350 O HOH A 1352 2.05 REMARK 500 OG SER A 286 O HOH A 1002 2.07 REMARK 500 O ASN A 297 O HOH A 1003 2.08 REMARK 500 O HOH A 1150 O HOH A 1233 2.09 REMARK 500 O HOH A 1029 O HOH A 1313 2.09 REMARK 500 O ASP A 10 O HOH A 1004 2.10 REMARK 500 O HOH A 1382 O HOH A 1422 2.14 REMARK 500 O ARG A 518 O HOH A 1005 2.16 REMARK 500 O HOH A 1311 O HOH A 1335 2.17 REMARK 500 O HOH A 1066 O HOH A 1390 2.17 REMARK 500 O LEU A 149 O HOH A 1006 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE3 LYS A 276 O HOH A 1015 1455 1.38 REMARK 500 O HOH A 1018 O HOH A 1381 1455 1.90 REMARK 500 O HOH A 1145 O HOH A 1356 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 70 C LYS A 71 N -0.251 REMARK 500 CYS A 212 CB CYS A 212 SG -0.128 REMARK 500 HIS A 401 C PRO A 402 N 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 70 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 MET A 146 CG - SD - CE ANGL. DEV. = 12.6 DEGREES REMARK 500 HIS A 401 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 -56.14 -128.84 REMARK 500 ASN A 209 50.47 37.27 REMARK 500 LYS A 244 -39.55 -137.90 REMARK 500 TRP A 260 -168.58 -123.55 REMARK 500 ASP A 311 -41.27 -150.88 REMARK 500 PHE A 333 75.00 -108.32 REMARK 500 PHE A 480 18.41 58.52 REMARK 500 ALA A 505 -18.78 90.81 REMARK 500 PHE A 530 -127.29 52.18 REMARK 500 ASP A 571 79.20 -103.39 REMARK 500 ASN A 601 -123.23 61.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 70 -10.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1426 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1430 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1431 DISTANCE = 10.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 905 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE2 REMARK 620 2 GLU A 607 OE2 16.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 907 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 79 O REMARK 620 2 ASN A 208 O 95.2 REMARK 620 3 HOH A1061 O 98.6 76.9 REMARK 620 4 HOH A1258 O 103.7 161.0 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 906 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 NZ REMARK 620 2 HIS A 264 NE2 83.8 REMARK 620 3 ASP A 311 OD1 120.8 103.7 REMARK 620 4 HOH A1022 O 90.4 165.4 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 904 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 291 OG1 REMARK 620 2 GDP A 902 O1B 84.5 REMARK 620 3 PEP A 903 O3P 167.2 102.5 REMARK 620 4 HOH A1031 O 93.3 92.7 96.9 REMARK 620 5 HOH A1060 O 77.3 87.6 92.3 170.5 REMARK 620 6 HOH A1117 O 80.3 161.1 94.5 77.0 99.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7L36 RELATED DB: PDB REMARK 900 STEADY-STATE PEPCK STRUCTURE FROM SAME EXPERIMENT REMARK 900 RELATED ID: 7L3M RELATED DB: PDB REMARK 900 40MS POST-MIXING STRUCTURE FROM SAME EXPERIMENT DBREF 7L3V A 1 622 UNP P07379 PCKGC_RAT 1 622 SEQADV 7L3V GLY A -1 UNP P07379 EXPRESSION TAG SEQADV 7L3V SER A 0 UNP P07379 EXPRESSION TAG SEQRES 1 A 624 GLY SER MET PRO PRO GLN LEU HIS ASN GLY LEU ASP PHE SEQRES 2 A 624 SER ALA LYS VAL ILE GLN GLY SER LEU ASP SER LEU PRO SEQRES 3 A 624 GLN GLU VAL ARG LYS PHE VAL GLU GLY ASN ALA GLN LEU SEQRES 4 A 624 CYS GLN PRO GLU TYR ILE HIS ILE CYS ASP GLY SER GLU SEQRES 5 A 624 GLU GLU TYR GLY ARG LEU LEU ALA HIS MET GLN GLU GLU SEQRES 6 A 624 GLY VAL ILE ARG LYS LEU LYS LYS TYR ASP ASN CYS TRP SEQRES 7 A 624 LEU ALA LEU THR ASP PRO ARG ASP VAL ALA ARG ILE GLU SEQRES 8 A 624 SER LYS THR VAL ILE ILE THR GLN GLU GLN ARG ASP THR SEQRES 9 A 624 VAL PRO ILE PRO LYS SER GLY GLN SER GLN LEU GLY ARG SEQRES 10 A 624 TRP MET SER GLU GLU ASP PHE GLU LYS ALA PHE ASN ALA SEQRES 11 A 624 ARG PHE PRO GLY CYS MET LYS GLY ARG THR MET TYR VAL SEQRES 12 A 624 ILE PRO PHE SER MET GLY PRO LEU GLY SER PRO LEU ALA SEQRES 13 A 624 LYS ILE GLY ILE GLU LEU THR ASP SER PRO TYR VAL VAL SEQRES 14 A 624 ALA SER MET ARG ILE MET THR ARG MET GLY THR SER VAL SEQRES 15 A 624 LEU GLU ALA LEU GLY ASP GLY GLU PHE ILE LYS CYS LEU SEQRES 16 A 624 HIS SER VAL GLY CYS PRO LEU PRO LEU LYS LYS PRO LEU SEQRES 17 A 624 VAL ASN ASN TRP ALA CYS ASN PRO GLU LEU THR LEU ILE SEQRES 18 A 624 ALA HIS LEU PRO ASP ARG ARG GLU ILE ILE SER PHE GLY SEQRES 19 A 624 SER GLY TYR GLY GLY ASN SER LEU LEU GLY LYS LYS CYS SEQRES 20 A 624 PHE ALA LEU ARG ILE ALA SER ARG LEU ALA LYS GLU GLU SEQRES 21 A 624 GLY TRP LEU ALA GLU HIS MET LEU ILE LEU GLY ILE THR SEQRES 22 A 624 ASN PRO GLU GLY LYS LYS LYS TYR LEU ALA ALA ALA PHE SEQRES 23 A 624 PRO SER ALA CYS GLY LYS THR ASN LEU ALA MET MET ASN SEQRES 24 A 624 PRO THR LEU PRO GLY TRP LYS VAL GLU CYS VAL GLY ASP SEQRES 25 A 624 ASP ILE ALA TRP MET LYS PHE ASP ALA GLN GLY ASN LEU SEQRES 26 A 624 ARG ALA ILE ASN PRO GLU ASN GLY PHE PHE GLY VAL ALA SEQRES 27 A 624 PRO GLY THR SER VAL LYS THR ASN PRO ASN ALA ILE LYS SEQRES 28 A 624 THR ILE GLN LYS ASN THR ILE PHE THR ASN VAL ALA GLU SEQRES 29 A 624 THR SER ASP GLY GLY VAL TYR TRP GLU GLY ILE ASP GLU SEQRES 30 A 624 PRO LEU ALA PRO GLY VAL THR ILE THR SER TRP LYS ASN SEQRES 31 A 624 LYS GLU TRP ARG PRO GLN ASP GLU GLU PRO CYS ALA HIS SEQRES 32 A 624 PRO ASN SER ARG PHE CYS THR PRO ALA SER GLN CYS PRO SEQRES 33 A 624 ILE ILE ASP PRO ALA TRP GLU SER PRO GLU GLY VAL PRO SEQRES 34 A 624 ILE GLU GLY ILE ILE PHE GLY GLY ARG ARG PRO ALA GLY SEQRES 35 A 624 VAL PRO LEU VAL TYR GLU ALA LEU SER TRP GLN HIS GLY SEQRES 36 A 624 VAL PHE VAL GLY ALA ALA MET ARG SER GLU ALA THR ALA SEQRES 37 A 624 ALA ALA GLU HIS LYS GLY LYS VAL ILE MET HIS ASP PRO SEQRES 38 A 624 PHE ALA MET ARG PRO PHE PHE GLY TYR ASN PHE GLY LYS SEQRES 39 A 624 TYR LEU ALA HIS TRP LEU SER MET ALA HIS ARG PRO ALA SEQRES 40 A 624 ALA LYS LEU PRO LYS ILE PHE HIS VAL ASN TRP PHE ARG SEQRES 41 A 624 LYS ASP LYS ASN GLY LYS PHE LEU TRP PRO GLY PHE GLY SEQRES 42 A 624 GLU ASN SER ARG VAL LEU GLU TRP MET PHE GLY ARG ILE SEQRES 43 A 624 GLU GLY GLU ASP SER ALA LYS LEU THR PRO ILE GLY TYR SEQRES 44 A 624 VAL PRO LYS GLU ASP ALA LEU ASN LEU LYS GLY LEU GLY SEQRES 45 A 624 ASP VAL ASN VAL GLU GLU LEU PHE GLY ILE SER LYS GLU SEQRES 46 A 624 PHE TRP GLU LYS GLU VAL GLU GLU ILE ASP LYS TYR LEU SEQRES 47 A 624 GLU ASP GLN VAL ASN ALA ASP LEU PRO TYR GLU ILE GLU SEQRES 48 A 624 ARG GLU LEU ARG ALA LEU LYS GLN ARG ILE SER GLN MET HET CO2 A 901 3 HET GDP A 902 28 HET PEP A 903 10 HET MN A 904 1 HET MN A 905 1 HET MN A 906 1 HET MN A 907 1 HETNAM CO2 CARBON DIOXIDE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM MN MANGANESE (II) ION FORMUL 2 CO2 C O2 FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 PEP C3 H5 O6 P FORMUL 5 MN 4(MN 2+) FORMUL 9 HOH *431(H2 O) HELIX 1 AA1 ASP A 10 ALA A 13 5 4 HELIX 2 AA2 SER A 19 LEU A 23 5 5 HELIX 3 AA3 PRO A 24 GLN A 39 1 16 HELIX 4 AA4 SER A 49 GLU A 63 1 15 HELIX 5 AA5 ILE A 88 SER A 90 5 3 HELIX 6 AA6 GLU A 98 VAL A 103 1 6 HELIX 7 AA7 SER A 118 ALA A 128 1 11 HELIX 8 AA8 SER A 163 THR A 174 1 12 HELIX 9 AA9 GLY A 177 GLY A 185 1 9 HELIX 10 AB1 ASN A 213 THR A 217 5 5 HELIX 11 AB2 PRO A 223 ARG A 225 5 3 HELIX 12 AB3 TYR A 235 LEU A 240 1 6 HELIX 13 AB4 LEU A 248 GLY A 259 1 12 HELIX 14 AB5 GLY A 289 MET A 295 1 7 HELIX 15 AB6 ASN A 344 GLN A 352 1 9 HELIX 16 AB7 SER A 411 CYS A 413 5 3 HELIX 17 AB8 SER A 449 MET A 460 1 12 HELIX 18 AB9 PRO A 479 MET A 482 5 4 HELIX 19 AC1 ASN A 489 MET A 500 1 12 HELIX 20 AC2 GLY A 529 GLU A 532 5 4 HELIX 21 AC3 ASN A 533 GLU A 545 1 13 HELIX 22 AC4 ASN A 573 PHE A 578 1 6 HELIX 23 AC5 SER A 581 VAL A 600 1 20 HELIX 24 AC6 ASN A 601 LEU A 604 5 4 HELIX 25 AC7 PRO A 605 MET A 622 1 18 SHEET 1 AA1 9 VAL A 15 GLN A 17 0 SHEET 2 AA1 9 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA1 9 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA1 9 LYS A 155 THR A 161 -1 O THR A 161 N TYR A 140 SHEET 5 AA1 9 ILE A 190 SER A 195 1 O CYS A 192 N ILE A 158 SHEET 6 AA1 9 GLU A 227 PHE A 231 1 O SER A 230 N LEU A 193 SHEET 7 AA1 9 LEU A 218 LEU A 222 -1 N ALA A 220 O ILE A 229 SHEET 8 AA1 9 THR A 92 ILE A 95 1 N ILE A 95 O HIS A 221 SHEET 9 AA1 9 TRP A 116 MET A 117 1 O MET A 117 N ILE A 94 SHEET 1 AA2 4 VAL A 15 GLN A 17 0 SHEET 2 AA2 4 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA2 4 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA2 4 ARG A 175 MET A 176 -1 O ARG A 175 N SER A 145 SHEET 1 AA3 5 ARG A 67 LYS A 68 0 SHEET 2 AA3 5 TRP A 76 ALA A 78 -1 O LEU A 77 N ARG A 67 SHEET 3 AA3 5 ILE A 356 THR A 358 1 O PHE A 357 N TRP A 76 SHEET 4 AA3 5 ARG A 405 PRO A 409 -1 O ARG A 405 N THR A 358 SHEET 5 AA3 5 GLY A 331 VAL A 335 -1 N PHE A 332 O THR A 408 SHEET 1 AA4 7 LEU A 261 GLU A 263 0 SHEET 2 AA4 7 ALA A 313 PHE A 317 -1 O ALA A 313 N GLU A 263 SHEET 3 AA4 7 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA4 7 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA4 7 LYS A 277 ALA A 283 1 N ALA A 283 O ILE A 432 SHEET 6 AA4 7 LEU A 266 THR A 271 -1 N ILE A 270 O LYS A 278 SHEET 7 AA4 7 LYS A 304 GLY A 309 -1 O GLU A 306 N GLY A 269 SHEET 1 AA5 6 LEU A 261 GLU A 263 0 SHEET 2 AA5 6 ALA A 313 PHE A 317 -1 O ALA A 313 N GLU A 263 SHEET 3 AA5 6 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA5 6 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA5 6 LYS A 510 VAL A 514 1 O LYS A 510 N ILE A 431 SHEET 6 AA5 6 VAL A 444 GLU A 446 -1 N TYR A 445 O HIS A 513 SHEET 1 AA6 3 VAL A 368 TYR A 369 0 SHEET 2 AA6 3 ALA A 361 THR A 363 -1 N ALA A 361 O TYR A 369 SHEET 3 AA6 3 ILE A 383 THR A 384 -1 O THR A 384 N GLU A 362 SHEET 1 AA7 2 ARG A 461 SER A 462 0 SHEET 2 AA7 2 MET A 476 HIS A 477 -1 O MET A 476 N SER A 462 SHEET 1 AA8 2 ALA A 550 THR A 553 0 SHEET 2 AA8 2 GLY A 556 PRO A 559 -1 O VAL A 558 N LYS A 551 LINK OE2 GLU A 63 MN MN A 905 1555 2545 2.71 LINK O LEU A 79 MN MN A 907 1555 1555 2.26 LINK O ASN A 208 MN MN A 907 1555 1555 2.52 LINK NZ LYS A 244 MN MN A 906 1555 1555 2.19 LINK NE2 HIS A 264 MN MN A 906 1555 1555 2.23 LINK OG1 THR A 291 MN MN A 904 1555 1555 2.26 LINK OD1 ASP A 311 MN MN A 906 1555 1555 1.86 LINK OE2 GLU A 607 MN MN A 905 1555 1555 2.55 LINK O1B GDP A 902 MN MN A 904 1555 1555 2.41 LINK O3P PEP A 903 MN MN A 904 1555 1555 2.23 LINK MN MN A 904 O HOH A1031 1555 1555 2.46 LINK MN MN A 904 O HOH A1060 1555 1555 2.41 LINK MN MN A 904 O HOH A1117 1555 1555 2.22 LINK MN MN A 906 O HOH A1022 1555 1555 2.26 LINK MN MN A 907 O HOH A1061 1555 1555 2.32 LINK MN MN A 907 O HOH A1258 1555 1555 2.35 CISPEP 1 LEU A 200 PRO A 201 0 -0.34 CRYST1 46.159 118.787 61.307 90.00 107.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021664 0.000000 0.006725 0.00000 SCALE2 0.000000 0.008418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017079 0.00000