HEADER DNA BINDING PROTEIN/DNA 19-DEC-20 7L4N TITLE CRYSTAL STRUCTURE OF THE DRM2 (C397R)-CCG DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN DOMAINS REARRANGED METHYLASE 2; COMPND 5 EC: 2.1.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*TP*AP*AP*AP*TP*TP*CP*GP*GP*AP*TP*TP*AP*GP*GP*AP*AP*T)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*AP*TP*TP*CP*CP*TP*AP*AP*TP*(C49) COMPND 15 P*CP*GP*AP*AP*TP*TP*TP*A)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DRM2, AT5G14620/AT5G14630, T15N1.110/T15N1.120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 16 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 17 ORGANISM_TAXID: 3702 KEYWDS DNA METHYLTRANSFERASE, COMPLEX, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.FANG,J.SONG REVDAT 2 18-OCT-23 7L4N 1 REMARK REVDAT 1 04-AUG-21 7L4N 0 JRNL AUTH J.FANG,S.M.LEICHTER,J.JIANG,M.BISWAL,J.LU,Z.M.ZHANG,W.REN, JRNL AUTH 2 J.ZHAI,Q.CUI,X.ZHONG,J.SONG JRNL TITL SUBSTRATE DEFORMATION REGULATES DRM2-MEDIATED DNA JRNL TITL 2 METHYLATION IN PLANTS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34078593 JRNL DOI 10.1126/SCIADV.ABD9224 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 35099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2020 - 5.4139 0.93 2426 145 0.1502 0.1611 REMARK 3 2 5.4139 - 4.2979 0.96 2395 144 0.1347 0.1565 REMARK 3 3 4.2979 - 3.7549 0.96 2372 144 0.1396 0.1819 REMARK 3 4 3.7549 - 3.4117 0.97 2346 141 0.1608 0.1870 REMARK 3 5 3.4117 - 3.1672 0.97 2374 143 0.1690 0.1959 REMARK 3 6 3.1672 - 2.9805 0.98 2380 144 0.2012 0.2672 REMARK 3 7 2.9805 - 2.8312 0.98 2363 142 0.2177 0.2593 REMARK 3 8 2.8312 - 2.7080 0.99 2371 143 0.2177 0.2565 REMARK 3 9 2.7080 - 2.6037 0.99 2392 144 0.2370 0.2717 REMARK 3 10 2.6037 - 2.5139 0.99 2389 144 0.2388 0.2525 REMARK 3 11 2.5139 - 2.4353 0.99 2399 145 0.2429 0.3127 REMARK 3 12 2.4353 - 2.3657 0.99 2333 140 0.2610 0.2545 REMARK 3 13 2.3657 - 2.3034 0.98 2392 145 0.2835 0.3014 REMARK 3 14 2.3034 - 2.2470 0.91 2173 130 0.3186 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0126 21.1697 -6.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.4911 T22: 0.3026 REMARK 3 T33: 0.3983 T12: -0.0271 REMARK 3 T13: 0.0004 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.6949 L22: 2.7346 REMARK 3 L33: 2.4144 L12: -0.1840 REMARK 3 L13: -0.4680 L23: -0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: 0.0122 S13: -0.2813 REMARK 3 S21: 0.1786 S22: -0.2057 S23: 0.1059 REMARK 3 S31: 0.4092 S32: 0.1468 S33: 0.0107 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7847 30.6141 6.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.2905 REMARK 3 T33: 0.2933 T12: -0.0091 REMARK 3 T13: -0.0116 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.3061 L22: 1.3581 REMARK 3 L33: 1.0588 L12: 0.0361 REMARK 3 L13: 0.1359 L23: -0.5546 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0222 S13: 0.0330 REMARK 3 S21: 0.1714 S22: -0.0301 S23: 0.0526 REMARK 3 S31: 0.3204 S32: -0.0723 S33: 0.0778 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6492 30.1068 -11.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.2869 REMARK 3 T33: 0.2743 T12: 0.0310 REMARK 3 T13: 0.0089 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.9399 L22: 0.1931 REMARK 3 L33: 1.8964 L12: -0.0401 REMARK 3 L13: -0.5470 L23: 0.0510 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.0384 S13: -0.0609 REMARK 3 S21: -0.0782 S22: -0.0209 S23: -0.0010 REMARK 3 S31: 0.1534 S32: 0.0367 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6044 26.8230 -28.2361 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.6435 REMARK 3 T33: 0.4810 T12: 0.1262 REMARK 3 T13: 0.0383 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 1.6691 L22: 1.5708 REMARK 3 L33: 2.6842 L12: 0.1400 REMARK 3 L13: -0.8860 L23: 0.6299 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: 0.1257 S13: -0.3080 REMARK 3 S21: -0.1259 S22: 0.0381 S23: -0.3714 REMARK 3 S31: 0.5021 S32: 0.6640 S33: -0.0182 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0093 44.3735 -9.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.3169 T22: 0.2755 REMARK 3 T33: 0.2717 T12: 0.0091 REMARK 3 T13: 0.0058 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.8958 L22: 0.4912 REMARK 3 L33: 1.3809 L12: -0.2597 REMARK 3 L13: -0.0181 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1110 S13: 0.1167 REMARK 3 S21: -0.0767 S22: 0.0181 S23: -0.0226 REMARK 3 S31: -0.1353 S32: 0.0697 S33: -0.0194 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 548 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0121 44.1008 8.0909 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.2988 REMARK 3 T33: 0.2745 T12: -0.0192 REMARK 3 T13: -0.0111 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.2378 L22: 2.0026 REMARK 3 L33: 1.5125 L12: -1.0169 REMARK 3 L13: -0.3880 L23: 0.2218 REMARK 3 S TENSOR REMARK 3 S11: -0.1221 S12: -0.2062 S13: 0.0721 REMARK 3 S21: 0.2096 S22: 0.0532 S23: -0.0386 REMARK 3 S31: 0.0751 S32: 0.0932 S33: 0.0337 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9408 52.8860 -12.6006 REMARK 3 T TENSOR REMARK 3 T11: 0.4385 T22: 0.4450 REMARK 3 T33: 0.4743 T12: -0.0490 REMARK 3 T13: 0.0591 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 3.9350 L22: 1.7010 REMARK 3 L33: 2.4453 L12: 0.7549 REMARK 3 L13: 0.8014 L23: -0.5859 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.3480 S13: -0.4134 REMARK 3 S21: 0.0805 S22: -0.1898 S23: -0.4045 REMARK 3 S31: 0.0238 S32: 0.0468 S33: 0.1066 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2476 25.2816 -6.7186 REMARK 3 T TENSOR REMARK 3 T11: 0.6135 T22: 0.4184 REMARK 3 T33: 0.5770 T12: 0.1643 REMARK 3 T13: 0.0079 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.2568 L22: 3.0051 REMARK 3 L33: 3.5882 L12: -0.4434 REMARK 3 L13: -0.5501 L23: -1.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.4228 S12: 0.0072 S13: -0.4665 REMARK 3 S21: -1.2136 S22: -0.7757 S23: -0.1230 REMARK 3 S31: 0.7305 S32: 0.3884 S33: 0.1617 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1193 2.8986 -8.9207 REMARK 3 T TENSOR REMARK 3 T11: 1.4910 T22: 0.6857 REMARK 3 T33: 1.7059 T12: 0.2174 REMARK 3 T13: -0.2935 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 2.3840 L22: 5.9768 REMARK 3 L33: 8.5734 L12: 1.4459 REMARK 3 L13: -2.2273 L23: 2.2304 REMARK 3 S TENSOR REMARK 3 S11: -0.7318 S12: 0.2037 S13: -0.7421 REMARK 3 S21: -0.2996 S22: -1.0781 S23: 0.4066 REMARK 3 S31: 0.4194 S32: 0.5648 S33: 0.6667 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9829 7.7261 -3.4764 REMARK 3 T TENSOR REMARK 3 T11: 1.1883 T22: 0.6342 REMARK 3 T33: 1.4980 T12: 0.1023 REMARK 3 T13: -0.1183 T23: 0.2821 REMARK 3 L TENSOR REMARK 3 L11: 3.7707 L22: 3.2672 REMARK 3 L33: 0.7223 L12: 0.2561 REMARK 3 L13: -0.4068 L23: 0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.8626 S12: -0.6408 S13: -0.3072 REMARK 3 S21: 0.9746 S22: -1.0920 S23: -0.2997 REMARK 3 S31: 0.2950 S32: 1.2131 S33: -0.0791 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5972 37.7877 -9.8214 REMARK 3 T TENSOR REMARK 3 T11: 0.3502 T22: 0.4425 REMARK 3 T33: 0.4654 T12: 0.0390 REMARK 3 T13: 0.0651 T23: 0.1033 REMARK 3 L TENSOR REMARK 3 L11: 1.2707 L22: 2.7138 REMARK 3 L33: 1.7556 L12: 0.7171 REMARK 3 L13: -0.0523 L23: -2.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.2150 S12: -0.1520 S13: -0.2134 REMARK 3 S21: -0.1143 S22: -0.5094 S23: -0.7153 REMARK 3 S31: -0.1826 S32: 0.3912 S33: 0.2243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.247 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ONJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V TACSIMATE(PH 6.0), 0.1 M BIS REMARK 280 -TRIS (PH 6.5) AND 20% W/V POLYETHYLENE GLYCOL 3,350., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.17350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.17350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.14600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 115.84600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.14600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 115.84600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.17350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.14600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 115.84600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.17350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.14600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 115.84600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 ASP A 272 REMARK 465 ASP A 273 REMARK 465 GLU A 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 277 NE CZ NH1 NH2 REMARK 470 HIS A 296 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 LYS A 442 CE NZ REMARK 470 DA C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1000 O HOH A 1054 1.81 REMARK 500 O HOH A 949 O HOH A 989 1.81 REMARK 500 O HOH A 809 O HOH A 915 1.90 REMARK 500 O HOH A 859 O HOH A 953 2.05 REMARK 500 O HOH B 107 O HOH C 123 2.06 REMARK 500 O HOH A 942 O HOH A 1069 2.11 REMARK 500 O HOH A 997 O HOH A 1017 2.17 REMARK 500 O HOH A 875 O HOH A 896 2.17 REMARK 500 O HOH A 915 O HOH A 955 2.17 REMARK 500 O HOH A 1039 O HOH C 123 2.18 REMARK 500 NZ LYS A 495 O HOH A 801 2.18 REMARK 500 O HOH A 940 O HOH A 1032 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1002 O HOH A 1040 3555 1.99 REMARK 500 O HOH A 913 O HOH A 1006 3554 2.11 REMARK 500 O HOH A 1024 O HOH A 1038 1556 2.12 REMARK 500 O HOH A 875 O HOH C 124 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 329 50.29 -117.79 REMARK 500 CYS A 343 -169.60 -160.54 REMARK 500 ARG A 347 94.61 -162.48 REMARK 500 PRO A 413 -6.48 -58.21 REMARK 500 SER A 558 -74.68 -106.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7L4C RELATED DB: PDB REMARK 900 RELATED ID: 7L4F RELATED DB: PDB REMARK 900 RELATED ID: 7L4H RELATED DB: PDB REMARK 900 RELATED ID: 7L4K RELATED DB: PDB REMARK 900 RELATED ID: 7L4M RELATED DB: PDB DBREF 7L4N A 270 626 UNP Q9M548 DRM2_ARATH 270 626 DBREF 7L4N B 1 18 PDB 7L4N 7L4N 1 18 DBREF 7L4N C 1 18 PDB 7L4N 7L4N 1 18 SEQADV 7L4N ARG A 397 UNP Q9M548 CYS 397 ENGINEERED MUTATION SEQRES 1 A 357 SER VAL ASP ASP GLU PRO ILE ARG LEU PRO ASN PRO MET SEQRES 2 A 357 ILE GLY PHE GLY VAL PRO ASN GLU PRO GLY LEU ILE THR SEQRES 3 A 357 HIS ARG SER LEU PRO GLU LEU ALA ARG GLY PRO PRO PHE SEQRES 4 A 357 PHE TYR TYR GLU ASN VAL ALA LEU THR PRO LYS GLY VAL SEQRES 5 A 357 TRP GLU THR ILE SER ARG HIS LEU PHE GLU ILE PRO PRO SEQRES 6 A 357 GLU PHE VAL ASP SER LYS TYR PHE CYS VAL ALA ALA ARG SEQRES 7 A 357 LYS ARG GLY TYR ILE HIS ASN LEU PRO ILE ASN ASN ARG SEQRES 8 A 357 PHE GLN ILE GLN PRO PRO PRO LYS TYR THR ILE HIS ASP SEQRES 9 A 357 ALA PHE PRO LEU SER LYS ARG TRP TRP PRO GLU TRP ASP SEQRES 10 A 357 LYS ARG THR LYS LEU ASN CYS ILE LEU THR ARG THR GLY SEQRES 11 A 357 SER ALA GLN LEU THR ASN ARG ILE ARG VAL ALA LEU GLU SEQRES 12 A 357 PRO TYR ASN GLU GLU PRO GLU PRO PRO LYS HIS VAL GLN SEQRES 13 A 357 ARG TYR VAL ILE ASP GLN CYS LYS LYS TRP ASN LEU VAL SEQRES 14 A 357 TRP VAL GLY LYS ASN LYS ALA ALA PRO LEU GLU PRO ASP SEQRES 15 A 357 GLU MET GLU SER ILE LEU GLY PHE PRO LYS ASN HIS THR SEQRES 16 A 357 ARG GLY GLY GLY MET SER ARG THR GLU ARG PHE LYS SER SEQRES 17 A 357 LEU GLY ASN SER PHE GLN VAL ASP THR VAL ALA TYR HIS SEQRES 18 A 357 LEU SER VAL LEU LYS PRO ILE PHE PRO HIS GLY ILE ASN SEQRES 19 A 357 VAL LEU SER LEU PHE THR GLY ILE GLY GLY GLY GLU VAL SEQRES 20 A 357 ALA LEU HIS ARG LEU GLN ILE LYS MET LYS LEU VAL VAL SEQRES 21 A 357 SER VAL GLU ILE SER LYS VAL ASN ARG ASN ILE LEU LYS SEQRES 22 A 357 ASP PHE TRP GLU GLN THR ASN GLN THR GLY GLU LEU ILE SEQRES 23 A 357 GLU PHE SER ASP ILE GLN HIS LEU THR ASN ASP THR ILE SEQRES 24 A 357 GLU GLY LEU MET GLU LYS TYR GLY GLY PHE ASP LEU VAL SEQRES 25 A 357 ILE GLY GLY SER PRO CYS ASN ASN LEU ALA GLY GLY ASN SEQRES 26 A 357 ARG VAL SER ARG VAL GLY LEU GLU GLY ASP GLN SER SER SEQRES 27 A 357 LEU PHE PHE GLU TYR CYS ARG ILE LEU GLU VAL VAL ARG SEQRES 28 A 357 ALA ARG MET ARG GLY SER SEQRES 1 B 18 DT DA DA DA DT DT DC DG DG DA DT DT DA SEQRES 2 B 18 DG DG DA DA DT SEQRES 1 C 18 DA DT DT DC DC DT DA DA DT C49 DC DG DA SEQRES 2 C 18 DA DT DT DT DA HET C49 C 10 21 HET SAH A 701 26 HET GOL A 702 6 HETNAM C49 4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'- HETNAM 2 C49 MONOPHOSPHATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 C49 C10 H15 F N3 O7 P S FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *343(H2 O) HELIX 1 AA1 PRO A 300 ARG A 304 5 5 HELIX 2 AA2 GLY A 320 LEU A 329 1 10 HELIX 3 AA3 LYS A 340 PHE A 342 5 3 HELIX 4 AA4 THR A 370 PHE A 375 1 6 HELIX 5 AA5 PRO A 376 TRP A 381 5 6 HELIX 6 AA6 SER A 400 GLU A 412 1 13 HELIX 7 AA7 PRO A 413 ASN A 415 5 3 HELIX 8 AA8 PRO A 421 TRP A 435 1 15 HELIX 9 AA9 GLU A 449 LEU A 457 1 9 HELIX 10 AB1 SER A 470 ASN A 480 1 11 HELIX 11 AB2 GLN A 483 SER A 492 1 10 HELIX 12 AB3 VAL A 493 PHE A 498 1 6 HELIX 13 AB4 GLY A 512 LEU A 521 1 10 HELIX 14 AB5 SER A 534 THR A 548 1 15 HELIX 15 AB6 ASP A 559 LEU A 563 5 5 HELIX 16 AB7 THR A 564 GLY A 576 1 13 HELIX 17 AB8 GLN A 605 SER A 607 5 3 HELIX 18 AB9 LEU A 608 ARG A 624 1 17 SHEET 1 AA1 7 GLU A 335 ASP A 338 0 SHEET 2 AA1 7 LYS A 348 HIS A 353 -1 O TYR A 351 N GLU A 335 SHEET 3 AA1 7 PHE A 308 VAL A 314 -1 N ASN A 313 O GLY A 350 SHEET 4 AA1 7 LEU A 580 GLY A 583 1 O VAL A 581 N TYR A 310 SHEET 5 AA1 7 ILE A 502 LEU A 507 1 N LEU A 505 O LEU A 580 SHEET 6 AA1 7 MET A 525 VAL A 531 1 O VAL A 529 N SER A 506 SHEET 7 AA1 7 GLU A 553 PHE A 557 1 O PHE A 557 N SER A 530 SHEET 1 AA2 2 LEU A 437 GLY A 441 0 SHEET 2 AA2 2 LYS A 444 PRO A 447 -1 O ALA A 446 N VAL A 438 LINK SG CYS A 587 C6 C49 C 10 1555 1555 1.85 LINK O3' DT C 9 P C49 C 10 1555 1555 1.61 LINK O3' C49 C 10 P DC C 11 1555 1555 1.61 CISPEP 1 ASN A 280 PRO A 281 0 4.58 CISPEP 2 GLY A 305 PRO A 306 0 0.05 CISPEP 3 PRO A 306 PRO A 307 0 -0.21 CISPEP 4 GLN A 364 PRO A 365 0 -4.20 CRYST1 118.292 231.692 54.347 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018400 0.00000