HEADER HYDROLASE/INHIBITOR 21-DEC-20 7L4T TITLE CRYSTAL STRUCTURE OF HUMAN MONOACYLGLYCEROL LIPASE IN COMPLEX WITH TITLE 2 COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOGLYCERIDE LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, SERINE HYDROLASE, HYDROLASE, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.QIN,S.C.GAY,W.LANE,R.J.SKENE REVDAT 4 18-OCT-23 7L4T 1 REMARK REVDAT 3 20-OCT-21 7L4T 1 AUTHOR REVDAT 2 25-AUG-21 7L4T 1 JRNL REVDAT 1 11-AUG-21 7L4T 0 JRNL AUTH S.IKEDA,H.SUGIYAMA,H.TOKUHARA,M.MURAKAMI,M.NAKAMURA,Y.OGURO, JRNL AUTH 2 J.AIDA,N.MORISHITA,S.SOGABE,D.R.DOUGAN,S.C.GAY,L.QIN, JRNL AUTH 3 N.ARIMURA,Y.TAKAHASHI,M.SASAKI,Y.KAMADA,K.AOYAMA,K.KIMOTO, JRNL AUTH 4 M.KAMATA JRNL TITL DESIGN AND SYNTHESIS OF NOVEL SPIRO DERIVATIVES AS POTENT JRNL TITL 2 AND REVERSIBLE MONOACYLGLYCEROL LIPASE (MAGL) INHIBITORS: JRNL TITL 3 BIOISOSTERIC TRANSFORMATION FROM 3-OXO-3,4-DIHYDRO-2 H JRNL TITL 4 -BENZO[ B ][1,4]OXAZIN-6-YL MOIETY. JRNL REF J.MED.CHEM. V. 64 11014 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34328319 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00432 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4451 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.14000 REMARK 3 B22 (A**2) : -3.51000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4627 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6289 ; 1.227 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 6.124 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;30.530 ;21.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;15.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 8.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3522 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 294 REMARK 3 RESIDUE RANGE : A 2501 A 2502 REMARK 3 ORIGIN FOR THE GROUP (A): -18.977 11.693 -49.794 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.0325 REMARK 3 T33: 0.1173 T12: -0.0148 REMARK 3 T13: 0.0342 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1001 L22: 2.2942 REMARK 3 L33: 0.9124 L12: -0.1247 REMARK 3 L13: -0.2089 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0510 S13: 0.0640 REMARK 3 S21: -0.0475 S22: -0.0236 S23: -0.3425 REMARK 3 S31: 0.0968 S32: -0.1601 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 294 REMARK 3 RESIDUE RANGE : B 401 B 405 REMARK 3 ORIGIN FOR THE GROUP (A): -25.261 -11.260 -18.101 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.1077 REMARK 3 T33: 0.2430 T12: 0.0172 REMARK 3 T13: -0.0227 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.1122 L22: 1.9227 REMARK 3 L33: 0.1114 L12: 0.2782 REMARK 3 L13: -0.0518 L23: 0.0657 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0507 S13: 0.0042 REMARK 3 S21: -0.0365 S22: -0.0714 S23: 0.5283 REMARK 3 S31: -0.0167 S32: 0.0983 S33: 0.0468 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7L4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40679 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAOAC PH 5.5, 32-38% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.90900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.68900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.04200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.90900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.68900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.04200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.90900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.68900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.04200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.90900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.68900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.04200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 295 REMARK 465 THR A 296 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 THR A 299 REMARK 465 ALA A 300 REMARK 465 SER A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 MET B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ALA B 295 REMARK 465 THR B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 THR B 299 REMARK 465 ALA B 300 REMARK 465 SER B 301 REMARK 465 PRO B 302 REMARK 465 PRO B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 GLU B 60 CD OE1 OE2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 53 -157.96 -96.84 REMARK 500 ASP A 69 27.29 80.16 REMARK 500 SER A 122 -123.40 62.50 REMARK 500 VAL A 149 -36.30 -130.90 REMARK 500 PRO A 225 -5.65 -56.41 REMARK 500 TYR A 268 -144.36 -88.62 REMARK 500 LYS A 273 42.44 -140.80 REMARK 500 GLU A 274 -163.23 -100.14 REMARK 500 PRO B 11 -17.39 -48.20 REMARK 500 GLU B 53 -158.74 -105.95 REMARK 500 SER B 122 -124.95 61.48 REMARK 500 SER B 146 65.96 33.34 REMARK 500 VAL B 149 -30.29 -138.11 REMARK 500 PRO B 225 3.44 -65.06 REMARK 500 TYR B 268 -148.92 -85.34 REMARK 500 LYS B 273 41.47 -140.18 REMARK 500 GLU B 274 -161.29 -101.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 666 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XPD A 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 DBREF1 7L4T A 0 303 UNP A0A0C4DFN3_HUMAN DBREF2 7L4T A A0A0C4DFN3 10 313 DBREF1 7L4T B 0 303 UNP A0A0C4DFN3_HUMAN DBREF2 7L4T B A0A0C4DFN3 10 313 SEQADV 7L4T MET A -16 UNP A0A0C4DFN INITIATING METHIONINE SEQADV 7L4T HIS A -15 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS A -14 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS A -13 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS A -12 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS A -11 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS A -10 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLY A -9 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T SER A -8 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLU A -7 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T ASN A -6 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T LEU A -5 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T TYR A -4 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T PHE A -3 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLN A -2 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLY A -1 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T ALA A 36 UNP A0A0C4DFN LYS 46 CONFLICT SEQADV 7L4T SER A 169 UNP A0A0C4DFN LEU 179 CONFLICT SEQADV 7L4T SER A 176 UNP A0A0C4DFN LEU 186 CONFLICT SEQADV 7L4T MET B -16 UNP A0A0C4DFN INITIATING METHIONINE SEQADV 7L4T HIS B -15 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS B -14 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS B -13 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS B -12 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS B -11 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T HIS B -10 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLY B -9 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T SER B -8 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLU B -7 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T ASN B -6 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T LEU B -5 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T TYR B -4 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T PHE B -3 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLN B -2 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T GLY B -1 UNP A0A0C4DFN EXPRESSION TAG SEQADV 7L4T ALA B 36 UNP A0A0C4DFN LYS 46 CONFLICT SEQADV 7L4T SER B 169 UNP A0A0C4DFN LEU 179 CONFLICT SEQADV 7L4T SER B 176 UNP A0A0C4DFN LEU 186 CONFLICT SEQRES 1 A 320 MET HIS HIS HIS HIS HIS HIS GLY SER GLU ASN LEU TYR SEQRES 2 A 320 PHE GLN GLY SER MET PRO GLU GLU SER SER PRO ARG ARG SEQRES 3 A 320 THR PRO GLN SER ILE PRO TYR GLN ASP LEU PRO HIS LEU SEQRES 4 A 320 VAL ASN ALA ASP GLY GLN TYR LEU PHE CYS ARG TYR TRP SEQRES 5 A 320 ALA PRO THR GLY THR PRO LYS ALA LEU ILE PHE VAL SER SEQRES 6 A 320 HIS GLY ALA GLY GLU HIS SER GLY ARG TYR GLU GLU LEU SEQRES 7 A 320 ALA ARG MET LEU MET GLY LEU ASP LEU LEU VAL PHE ALA SEQRES 8 A 320 HIS ASP HIS VAL GLY HIS GLY GLN SER GLU GLY GLU ARG SEQRES 9 A 320 MET VAL VAL SER ASP PHE HIS VAL PHE VAL ARG ASP VAL SEQRES 10 A 320 LEU GLN HIS VAL ASP SER MET GLN LYS ASP TYR PRO GLY SEQRES 11 A 320 LEU PRO VAL PHE LEU LEU GLY HIS SER MET GLY GLY ALA SEQRES 12 A 320 ILE ALA ILE LEU THR ALA ALA GLU ARG PRO GLY HIS PHE SEQRES 13 A 320 ALA GLY MET VAL LEU ILE SER PRO LEU VAL LEU ALA ASN SEQRES 14 A 320 PRO GLU SER ALA THR THR PHE LYS VAL LEU ALA ALA LYS SEQRES 15 A 320 VAL LEU ASN SER VAL LEU PRO ASN LEU SER SER GLY PRO SEQRES 16 A 320 ILE ASP SER SER VAL LEU SER ARG ASN LYS THR GLU VAL SEQRES 17 A 320 ASP ILE TYR ASN SER ASP PRO LEU ILE CYS ARG ALA GLY SEQRES 18 A 320 LEU LYS VAL CYS PHE GLY ILE GLN LEU LEU ASN ALA VAL SEQRES 19 A 320 SER ARG VAL GLU ARG ALA LEU PRO LYS LEU THR VAL PRO SEQRES 20 A 320 PHE LEU LEU LEU GLN GLY SER ALA ASP ARG LEU CYS ASP SEQRES 21 A 320 SER LYS GLY ALA TYR LEU LEU MET GLU LEU ALA LYS SER SEQRES 22 A 320 GLN ASP LYS THR LEU LYS ILE TYR GLU GLY ALA TYR HIS SEQRES 23 A 320 VAL LEU HIS LYS GLU LEU PRO GLU VAL THR ASN SER VAL SEQRES 24 A 320 PHE HIS GLU ILE ASN MET TRP VAL SER GLN ARG THR ALA SEQRES 25 A 320 THR ALA GLY THR ALA SER PRO PRO SEQRES 1 B 320 MET HIS HIS HIS HIS HIS HIS GLY SER GLU ASN LEU TYR SEQRES 2 B 320 PHE GLN GLY SER MET PRO GLU GLU SER SER PRO ARG ARG SEQRES 3 B 320 THR PRO GLN SER ILE PRO TYR GLN ASP LEU PRO HIS LEU SEQRES 4 B 320 VAL ASN ALA ASP GLY GLN TYR LEU PHE CYS ARG TYR TRP SEQRES 5 B 320 ALA PRO THR GLY THR PRO LYS ALA LEU ILE PHE VAL SER SEQRES 6 B 320 HIS GLY ALA GLY GLU HIS SER GLY ARG TYR GLU GLU LEU SEQRES 7 B 320 ALA ARG MET LEU MET GLY LEU ASP LEU LEU VAL PHE ALA SEQRES 8 B 320 HIS ASP HIS VAL GLY HIS GLY GLN SER GLU GLY GLU ARG SEQRES 9 B 320 MET VAL VAL SER ASP PHE HIS VAL PHE VAL ARG ASP VAL SEQRES 10 B 320 LEU GLN HIS VAL ASP SER MET GLN LYS ASP TYR PRO GLY SEQRES 11 B 320 LEU PRO VAL PHE LEU LEU GLY HIS SER MET GLY GLY ALA SEQRES 12 B 320 ILE ALA ILE LEU THR ALA ALA GLU ARG PRO GLY HIS PHE SEQRES 13 B 320 ALA GLY MET VAL LEU ILE SER PRO LEU VAL LEU ALA ASN SEQRES 14 B 320 PRO GLU SER ALA THR THR PHE LYS VAL LEU ALA ALA LYS SEQRES 15 B 320 VAL LEU ASN SER VAL LEU PRO ASN LEU SER SER GLY PRO SEQRES 16 B 320 ILE ASP SER SER VAL LEU SER ARG ASN LYS THR GLU VAL SEQRES 17 B 320 ASP ILE TYR ASN SER ASP PRO LEU ILE CYS ARG ALA GLY SEQRES 18 B 320 LEU LYS VAL CYS PHE GLY ILE GLN LEU LEU ASN ALA VAL SEQRES 19 B 320 SER ARG VAL GLU ARG ALA LEU PRO LYS LEU THR VAL PRO SEQRES 20 B 320 PHE LEU LEU LEU GLN GLY SER ALA ASP ARG LEU CYS ASP SEQRES 21 B 320 SER LYS GLY ALA TYR LEU LEU MET GLU LEU ALA LYS SER SEQRES 22 B 320 GLN ASP LYS THR LEU LYS ILE TYR GLU GLY ALA TYR HIS SEQRES 23 B 320 VAL LEU HIS LYS GLU LEU PRO GLU VAL THR ASN SER VAL SEQRES 24 B 320 PHE HIS GLU ILE ASN MET TRP VAL SER GLN ARG THR ALA SEQRES 25 B 320 THR ALA GLY THR ALA SER PRO PRO HET XPD A2501 29 HET ACT A2502 4 HET MPD B 401 8 HET MPD B 402 8 HET MPD B 403 8 HET MPD B 404 8 HET ACT B 405 4 HETNAM XPD 6-{4-[(2-CHLORO-4-FLUOROPHENOXY)METHYL]PIPERIDINE-1- HETNAM 2 XPD CARBONYL}-2H-1,4-BENZOXAZIN-3(4H)-ONE HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 XPD C21 H20 CL F N2 O4 FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 MPD 4(C6 H14 O2) FORMUL 10 HOH *308(H2 O) HELIX 1 AA1 PRO A 15 LEU A 19 5 5 HELIX 2 AA2 HIS A 54 ARG A 57 5 4 HELIX 3 AA3 TYR A 58 GLY A 67 1 10 HELIX 4 AA4 PHE A 93 TYR A 111 1 19 HELIX 5 AA5 SER A 122 ARG A 135 1 14 HELIX 6 AA6 THR A 157 LEU A 171 1 15 HELIX 7 AA7 ASP A 180 LEU A 184 5 5 HELIX 8 AA8 ASN A 187 ASP A 197 1 11 HELIX 9 AA9 LYS A 206 LEU A 224 1 19 HELIX 10 AB1 PRO A 225 LEU A 227 5 3 HELIX 11 AB2 ASP A 243 ALA A 254 1 12 HELIX 12 AB3 VAL A 270 GLU A 274 5 5 HELIX 13 AB4 LEU A 275 THR A 294 1 20 HELIX 14 AB5 PRO B 15 LEU B 19 5 5 HELIX 15 AB6 HIS B 54 ARG B 57 5 4 HELIX 16 AB7 TYR B 58 GLY B 67 1 10 HELIX 17 AB8 PHE B 93 TYR B 111 1 19 HELIX 18 AB9 SER B 122 ARG B 135 1 14 HELIX 19 AC1 THR B 157 SER B 169 1 13 HELIX 20 AC2 ASP B 180 LEU B 184 5 5 HELIX 21 AC3 ASN B 187 ASN B 195 1 9 HELIX 22 AC4 LYS B 206 LEU B 224 1 19 HELIX 23 AC5 PRO B 225 LEU B 227 5 3 HELIX 24 AC6 ASP B 243 ALA B 254 1 12 HELIX 25 AC7 VAL B 270 GLU B 274 5 5 HELIX 26 AC8 LEU B 275 GLN B 292 1 18 SHEET 1 AA1 8 HIS A 21 VAL A 23 0 SHEET 2 AA1 8 TYR A 29 TRP A 35 -1 O LEU A 30 N LEU A 22 SHEET 3 AA1 8 LEU A 70 HIS A 75 -1 O ALA A 74 N ARG A 33 SHEET 4 AA1 8 ALA A 43 SER A 48 1 N ALA A 43 O LEU A 71 SHEET 5 AA1 8 VAL A 116 HIS A 121 1 O LEU A 119 N SER A 48 SHEET 6 AA1 8 GLY A 141 ILE A 145 1 O ILE A 145 N GLY A 120 SHEET 7 AA1 8 PHE A 231 GLY A 236 1 O LEU A 232 N LEU A 144 SHEET 8 AA1 8 LYS A 259 TYR A 264 1 O THR A 260 N LEU A 233 SHEET 1 AA2 8 HIS B 21 VAL B 23 0 SHEET 2 AA2 8 TYR B 29 TRP B 35 -1 O LEU B 30 N LEU B 22 SHEET 3 AA2 8 LEU B 70 HIS B 75 -1 O VAL B 72 N TRP B 35 SHEET 4 AA2 8 ALA B 43 SER B 48 1 N ILE B 45 O PHE B 73 SHEET 5 AA2 8 VAL B 116 HIS B 121 1 O LEU B 119 N SER B 48 SHEET 6 AA2 8 GLY B 141 ILE B 145 1 O VAL B 143 N LEU B 118 SHEET 7 AA2 8 PHE B 231 GLY B 236 1 O LEU B 232 N LEU B 144 SHEET 8 AA2 8 LYS B 259 TYR B 264 1 O THR B 260 N LEU B 233 SITE 1 AC1 12 ALA A 51 GLU A 53 ARG A 57 HIS A 121 SITE 2 AC1 12 SER A 122 MET A 123 LEU A 184 TYR A 194 SITE 3 AC1 12 LEU A 205 LEU A 214 HIS A 269 VAL A 270 SITE 1 AC2 1 TYR A 111 SITE 1 AC3 4 LEU B 241 MPD B 402 MPD B 403 HOH B 528 SITE 1 AC4 7 ALA B 151 ASN B 152 SER B 155 LEU B 205 SITE 2 AC4 7 GLY B 210 MPD B 401 HOH B 608 SITE 1 AC5 9 GLY B 50 ALA B 51 GLU B 53 HIS B 121 SITE 2 AC5 9 TYR B 194 VAL B 270 MPD B 401 HOH B 541 SITE 3 AC5 9 HOH B 565 SITE 1 AC6 3 GLN A 102 HOH B 503 HOH B 530 SITE 1 AC7 1 TYR B 111 CRYST1 91.818 127.378 136.084 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007348 0.00000