HEADER VIRAL PROTEIN/IMMUNE SYSTEM 21-DEC-20 7L5B TITLE CRYSTALLOGRAPHIC STRUCTURE OF NEUTRALIZING ANTIBODY 2-15 IN COMPLEX TITLE 2 WITH SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN (RBD). COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN,SPIKE GLYCOPROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 2-15 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 2-15 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SPIKE PROTEIN S1, RECEPTOR BINDING PROTEIN SARS COV-2, VIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.R.REDDEM,L.SHAPIRO REVDAT 4 18-OCT-23 7L5B 1 JRNL REVDAT 3 21-APR-21 7L5B 1 JRNL REVDAT 2 14-APR-21 7L5B 1 JRNL REVDAT 1 10-FEB-21 7L5B 0 JRNL AUTH M.RAPP,Y.GUO,E.R.REDDEM,J.YU,L.LIU,P.WANG,G.CERUTTI, JRNL AUTH 2 P.KATSAMBA,J.S.BIMELA,F.A.BAHNA,S.M.MANNEPALLI,B.ZHANG, JRNL AUTH 3 P.D.KWONG,Y.HUANG,D.D.HO,L.SHAPIRO,Z.SHENG JRNL TITL MODULAR BASIS FOR POTENT SARS-COV-2 NEUTRALIZATION BY A JRNL TITL 2 PREVALENT VH1-2-DERIVED ANTIBODY CLASS. JRNL REF CELL REP V. 35 08950 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 33794145 JRNL DOI 10.1016/J.CELREP.2021.108950 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.RAPP,Y.GUO,E.R.REDDEM,L.LIU,P.WANG,J.YU,G.CERUTTI, REMARK 1 AUTH 2 J.BIMELA,F.BAHNA,S.MANNEPALLI,B.ZHANG,P.D.KWONG,D.D.HO, REMARK 1 AUTH 3 L.SHAPIRO,Z.SHENG REMARK 1 TITL MODULAR BASIS FOR POTENT SARS-COV-2 NEUTRALIZATION BY A REMARK 1 TITL 2 PREVALENT VH1-2-DERIVED ANTIBODY CLASS REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2021.01.11.426218 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 20304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 8.8800 - 7.8400 0.95 1325 144 0.2631 0.3390 REMARK 3 2 7.8300 - 6.2200 0.99 1347 153 0.2409 0.3083 REMARK 3 3 6.2200 - 5.4300 1.00 1316 144 0.1936 0.2241 REMARK 3 4 5.4300 - 4.9400 1.00 1347 149 0.1799 0.2053 REMARK 3 5 4.9400 - 4.5800 1.00 1331 151 0.1758 0.2394 REMARK 3 6 4.5800 - 4.3100 1.00 1315 147 0.1646 0.1987 REMARK 3 7 4.3100 - 4.1000 0.99 1311 140 0.1533 0.2136 REMARK 3 8 4.1000 - 3.9200 0.99 1315 149 0.1575 0.1835 REMARK 3 9 3.9200 - 3.7700 1.00 1314 153 0.1489 0.1843 REMARK 3 10 3.7700 - 3.6400 1.00 1332 151 0.1788 0.2607 REMARK 3 11 3.6400 - 3.5200 1.00 1299 142 0.1529 0.2133 REMARK 3 12 3.5200 - 3.4200 1.00 1328 145 0.1480 0.2438 REMARK 3 13 3.4200 - 3.3300 1.00 1294 154 0.1683 0.2259 REMARK 3 14 3.3300 - 3.2500 0.68 885 93 0.1928 0.2435 REMARK 3 15 3.2500 - 3.1800 0.20 205 25 0.2049 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4692 REMARK 3 ANGLE : 1.410 6384 REMARK 3 CHIRALITY : 0.074 697 REMARK 3 PLANARITY : 0.009 818 REMARK 3 DIHEDRAL : 8.505 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS V.7.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27227 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 102.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.18.2_3874: ???) REMARK 200 STARTING MODEL: 7BZ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 70 % MPD, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.55818 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.50796 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.55818 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 69.50796 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 316 REMARK 465 PRO A 317 REMARK 465 ARG A 318 REMARK 465 ARG A 319 REMARK 465 VAL A 320 REMARK 465 GLN A 321 REMARK 465 PRO A 322 REMARK 465 THR A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 VAL A 327 REMARK 465 ARG A 328 REMARK 465 PHE A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 ASN A 334 REMARK 465 LEU A 335 REMARK 465 VAL A 362 REMARK 465 ALA A 363 REMARK 465 ASP A 364 REMARK 465 TYR A 365 REMARK 465 SER A 366 REMARK 465 SER A 383 REMARK 465 PRO A 384 REMARK 465 THR A 385 REMARK 465 LYS A 386 REMARK 465 LEU A 387 REMARK 465 ASN A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 HIS A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 VAL A 524 REMARK 465 CYS A 525 REMARK 465 GLY A 526 REMARK 465 PRO A 527 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 VAL A 534 REMARK 465 LYS A 535 REMARK 465 ASN A 536 REMARK 465 LYS A 537 REMARK 465 GLY A 538 REMARK 465 SER A 539 REMARK 465 LEU A 540 REMARK 465 GLU A 541 REMARK 465 VAL A 542 REMARK 465 LEU A 543 REMARK 465 PHE A 544 REMARK 465 GLN A 545 REMARK 465 GLY A 546 REMARK 465 PRO A 547 REMARK 465 GLY A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 GLN H 1 REMARK 465 ALA H 141 REMARK 465 PRO H 142 REMARK 465 SER H 143 REMARK 465 SER H 144 REMARK 465 LYS H 145 REMARK 465 SER H 146 REMARK 465 THR H 147 REMARK 465 SER H 148 REMARK 465 GLN L 1 REMARK 465 THR L 213 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 351 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 351 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP H 56 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU H 194 CB - CG - CD2 ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 337 77.35 -69.92 REMARK 500 SER A 371 73.26 51.15 REMARK 500 SER A 375 -71.72 -79.15 REMARK 500 ARG A 403 -167.09 -78.75 REMARK 500 ASN A 422 -47.04 -137.71 REMARK 500 TYR A 423 109.13 -165.03 REMARK 500 ASP A 428 51.30 -119.87 REMARK 500 SER A 438 44.73 -143.99 REMARK 500 ASP A 442 33.49 -99.37 REMARK 500 LEU A 455 -60.08 -94.93 REMARK 500 ASN A 460 -167.44 -77.25 REMARK 500 TYR A 473 108.66 -45.88 REMARK 500 ASN A 481 11.23 49.92 REMARK 500 GLU A 484 -155.63 -82.01 REMARK 500 CYS A 488 113.08 -164.72 REMARK 500 LEU A 513 78.09 -117.37 REMARK 500 SER H 55 -28.67 75.70 REMARK 500 ASP H 56 -178.77 176.65 REMARK 500 ASP H 89 31.01 -89.44 REMARK 500 TRP H 111 -164.91 -113.25 REMARK 500 ALA H 112 104.23 72.70 REMARK 500 TYR H 113 110.50 -36.58 REMARK 500 PHE H 116 -159.89 -84.53 REMARK 500 ASP H 160 62.91 61.91 REMARK 500 ASN H 171 14.51 54.12 REMARK 500 THR H 176 38.81 -140.24 REMARK 500 SER H 188 44.26 -78.90 REMARK 500 SER H 189 12.04 -146.51 REMARK 500 SER H 193 112.42 -171.55 REMARK 500 SER L 27 -54.61 -120.77 REMARK 500 ASP L 28 -38.17 -130.86 REMARK 500 VAL L 53 -66.21 61.49 REMARK 500 SER L 96 6.10 -68.52 REMARK 500 SER L 97 -7.40 69.56 REMARK 500 ASP L 155 53.67 35.18 REMARK 500 ASN L 174 -11.32 71.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 7L5B A 319 537 UNP P0DTC2 SPIKE_SARS2 319 537 DBREF 7L5B H 1 227 PDB 7L5B 7L5B 1 227 DBREF 7L5B L 1 216 PDB 7L5B 7L5B 1 216 SEQADV 7L5B ALA A 316 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B PRO A 317 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B ARG A 318 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B GLY A 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B SER A 539 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B LEU A 540 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B GLU A 541 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B VAL A 542 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B LEU A 543 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B PHE A 544 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B GLN A 545 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B GLY A 546 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B PRO A 547 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B GLY A 548 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 549 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 550 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 551 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 552 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 553 UNP P0DTC2 EXPRESSION TAG SEQADV 7L5B HIS A 554 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 239 ALA PRO ARG ARG VAL GLN PRO THR GLU SER ILE VAL ARG SEQRES 2 A 239 PHE PRO ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL SEQRES 3 A 239 PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN SEQRES 4 A 239 ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL SEQRES 5 A 239 LEU TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR SEQRES 6 A 239 GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR SEQRES 7 A 239 ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU SEQRES 8 A 239 VAL ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA SEQRES 9 A 239 ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS SEQRES 10 A 239 VAL ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL SEQRES 11 A 239 GLY GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SEQRES 12 A 239 SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU SEQRES 13 A 239 ILE TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU SEQRES 14 A 239 GLY PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE SEQRES 15 A 239 GLN PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL SEQRES 16 A 239 VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR SEQRES 17 A 239 VAL CYS GLY PRO LYS LYS SER THR ASN LEU VAL LYS ASN SEQRES 18 A 239 LYS GLY SER LEU GLU VAL LEU PHE GLN GLY PRO GLY HIS SEQRES 19 A 239 HIS HIS HIS HIS HIS SEQRES 1 H 227 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 227 PRO GLY ALA SER VAL ARG VAL SER CYS LYS ALA SER GLY SEQRES 3 H 227 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 227 PRO ILE SER ASP GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 227 GLY TRP VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 227 VAL TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ARG GLY GLY SER ARG CYS SER SEQRES 9 H 227 GLY GLY ASN CYS TYR GLY TRP ALA TYR ASP ALA PHE ASP SEQRES 10 H 227 ILE TRP GLY GLN GLY THR MET ILE THR VAL SER SER ALA SEQRES 11 H 227 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 H 227 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 H 227 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 H 227 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 H 227 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 H 227 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 H 227 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 H 227 LYS VAL ASP LYS LYS VAL SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY GLY TYR ASN PHE VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP SEQRES 5 L 216 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP CYS TYR CYS SER SEQRES 8 L 216 SER TYR THR SER SER SER THR PHE VAL PHE GLY THR GLY SEQRES 9 L 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HELIX 1 AA1 PRO A 337 PHE A 342 1 6 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 ASP A 405 ILE A 410 5 6 HELIX 4 AA4 GLY A 416 TYR A 421 1 6 HELIX 5 AA5 ARG H 87 THR H 91 5 5 HELIX 6 AA6 SER H 203 LEU H 205 5 3 HELIX 7 AA7 LYS H 217 ASN H 220 5 4 HELIX 8 AA8 GLN L 81 GLU L 85 5 5 HELIX 9 AA9 SER L 125 GLN L 130 1 6 HELIX 10 AB1 THR L 185 HIS L 192 1 8 SHEET 1 AA1 4 THR A 376 LYS A 378 0 SHEET 2 AA1 4 GLY A 431 ASN A 437 -1 O ALA A 435 N THR A 376 SHEET 3 AA1 4 TYR A 508 GLU A 516 -1 O VAL A 511 N ILE A 434 SHEET 4 AA1 4 ASN A 394 ASP A 398 -1 N TYR A 396 O SER A 514 SHEET 1 AA2 2 TYR A 453 ARG A 454 0 SHEET 2 AA2 2 LEU A 492 GLN A 493 -1 O GLN A 493 N TYR A 453 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 ARG H 19 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA3 4 THR H 78 LEU H 83 -1 O VAL H 79 N CYS H 22 SHEET 4 AA3 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA4 6 GLU H 10 LYS H 12 0 SHEET 2 AA4 6 GLY H 120 MET H 124 1 O THR H 123 N GLU H 10 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N ALA H 92 O GLY H 122 SHEET 4 AA4 6 MET H 34 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AA4 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA5 4 SER H 136 VAL H 137 0 SHEET 2 AA5 4 GLY H 155 TYR H 161 -1 O GLY H 155 N VAL H 137 SHEET 3 AA5 4 TYR H 192 VAL H 198 -1 O TYR H 192 N TYR H 161 SHEET 4 AA5 4 VAL H 179 PHE H 182 -1 N HIS H 180 O VAL H 197 SHEET 1 AA6 2 THR H 151 ALA H 152 0 SHEET 2 AA6 2 VAL H 200 PRO H 201 -1 O VAL H 200 N ALA H 152 SHEET 1 AA7 3 THR H 167 TRP H 170 0 SHEET 2 AA7 3 ILE H 211 HIS H 216 -1 O ASN H 215 N THR H 167 SHEET 3 AA7 3 THR H 221 LYS H 226 -1 O THR H 221 N HIS H 216 SHEET 1 AA8 2 SER L 9 GLY L 12 0 SHEET 2 AA8 2 LYS L 106 VAL L 109 1 O LYS L 106 N VAL L 10 SHEET 1 AA9 3 ILE L 18 THR L 23 0 SHEET 2 AA9 3 THR L 72 ILE L 77 -1 O ILE L 77 N ILE L 18 SHEET 3 AA9 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AB1 4 LYS L 47 ILE L 50 0 SHEET 2 AB1 4 SER L 36 GLN L 40 -1 N TRP L 37 O ILE L 50 SHEET 3 AB1 4 ASP L 87 TYR L 93 -1 O TYR L 89 N TYR L 38 SHEET 4 AB1 4 PHE L 99 PHE L 101 -1 O VAL L 100 N SER L 92 SHEET 1 AB2 4 THR L 118 PHE L 122 0 SHEET 2 AB2 4 ALA L 134 PHE L 143 -1 O SER L 141 N THR L 118 SHEET 3 AB2 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB2 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB3 4 THR L 118 PHE L 122 0 SHEET 2 AB3 4 ALA L 134 PHE L 143 -1 O SER L 141 N THR L 118 SHEET 3 AB3 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB3 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB4 4 SER L 157 PRO L 158 0 SHEET 2 AB4 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB4 4 TYR L 195 THR L 200 -1 O THR L 200 N THR L 149 SHEET 4 AB4 4 THR L 209 VAL L 210 -1 O VAL L 210 N TYR L 195 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.05 SSBOND 3 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 5 CYS H 103 CYS H 108 1555 1555 2.03 SSBOND 6 CYS H 156 CYS H 212 1555 1555 2.00 SSBOND 7 CYS L 22 CYS L 90 1555 1555 2.05 SSBOND 8 CYS L 138 CYS L 197 1555 1555 2.02 CISPEP 1 PHE H 162 PRO H 163 0 -0.18 CISPEP 2 GLU H 164 PRO H 165 0 -2.03 CISPEP 3 TYR L 144 PRO L 145 0 0.84 CRYST1 134.013 70.439 140.039 90.00 96.93 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007462 0.000000 0.000907 0.00000 SCALE2 0.000000 0.014197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000