HEADER MEMBRANE PROTEIN 23-DEC-20 7L6K TITLE APOL1 N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN L1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 61-172; COMPND 5 SYNONYM: APOLIPOPROTEIN L,APOL,APOLIPOPROTEIN L-I,APOL-I; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOL1, APOL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ION CHANNEL, KIDNEY DISEASE, LIPOPROTEIN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.HOLLIDAY,M.ULTSCH,P.MORAN,W.J.FAIRBROTHER,D.KIRCHHOFER REVDAT 4 15-MAY-24 7L6K 1 REMARK REVDAT 3 14-JUN-23 7L6K 1 REMARK REVDAT 2 25-AUG-21 7L6K 1 JRNL REVDAT 1 04-AUG-21 7L6K 0 JRNL AUTH M.ULTSCH,M.J.HOLLIDAY,S.GERHARDY,P.MORAN,S.J.SCALES,N.GUPTA, JRNL AUTH 2 F.OLTRABELLA,C.CHIU,W.FAIRBROTHER,C.EIGENBROT,D.KIRCHHOFER JRNL TITL STRUCTURES OF THE APOL1 AND APOL2 N-TERMINAL DOMAINS REVEAL JRNL TITL 2 A NON-CLASSICAL FOUR-HELIX BUNDLE MOTIF. JRNL REF COMMUN BIOL V. 4 916 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 34316015 JRNL DOI 10.1038/S42003-021-02387-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.97 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000252260. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 APOL1 (61-172), 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C TROSY REMARK 210 AROMATIC; 2D 1H-13C HSQC; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D (H)CC(CO)NH; 3D REMARK 210 1H-15N NOESY; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 60 30.06 -153.93 REMARK 500 1 PHE A 144 -53.76 -148.25 REMARK 500 1 GLN A 166 -62.81 -95.91 REMARK 500 1 HIS A 169 98.95 -67.24 REMARK 500 1 LYS A 170 82.50 -69.30 REMARK 500 2 PRO A 145 -169.85 -71.21 REMARK 500 2 LYS A 170 -169.41 -167.45 REMARK 500 3 TRP A 129 -57.72 -120.89 REMARK 500 3 ARG A 146 90.33 56.20 REMARK 500 3 LYS A 170 -64.61 68.26 REMARK 500 4 GLN A 134 -76.20 27.66 REMARK 500 4 VAL A 168 92.06 -52.66 REMARK 500 4 LYS A 170 -33.84 75.43 REMARK 500 5 LYS A 127 45.62 -95.31 REMARK 500 5 GLN A 134 -178.09 -62.72 REMARK 500 5 PRO A 145 49.36 -75.87 REMARK 500 6 SER A 60 32.17 -94.98 REMARK 500 6 GLU A 102 63.53 60.78 REMARK 500 6 ASP A 131 32.23 -97.32 REMARK 500 6 ARG A 146 -54.51 -144.93 REMARK 500 6 LYS A 148 -36.65 74.58 REMARK 500 6 GLN A 166 -63.91 -133.00 REMARK 500 7 GLN A 166 -53.41 -127.70 REMARK 500 8 VAL A 168 -64.01 69.56 REMARK 500 9 ARG A 146 -25.10 66.61 REMARK 500 9 LEU A 147 40.50 -81.64 REMARK 500 10 GLU A 143 49.12 -97.98 REMARK 500 10 PHE A 144 -50.75 -161.53 REMARK 500 10 LYS A 167 15.76 -152.95 REMARK 500 11 SER A 60 50.28 -114.86 REMARK 500 11 ARG A 137 91.22 -67.71 REMARK 500 11 LYS A 170 97.95 -60.12 REMARK 500 12 SER A 60 16.55 -153.77 REMARK 500 12 LYS A 127 65.51 -150.43 REMARK 500 12 ASN A 128 22.02 -146.05 REMARK 500 12 ARG A 146 19.20 48.05 REMARK 500 13 PRO A 145 -177.57 -69.25 REMARK 500 13 ARG A 146 106.01 -58.94 REMARK 500 14 ASN A 128 4.74 -64.33 REMARK 500 14 ARG A 146 -70.50 -76.24 REMARK 500 15 GLN A 134 15.10 58.87 REMARK 500 15 ARG A 146 -154.16 -89.92 REMARK 500 15 GLN A 166 79.67 63.63 REMARK 500 16 SER A 60 25.95 -149.57 REMARK 500 16 TRP A 129 -68.86 -121.98 REMARK 500 16 ASN A 138 31.50 -99.32 REMARK 500 16 VAL A 168 -42.95 62.28 REMARK 500 17 SER A 60 24.43 -147.48 REMARK 500 17 HIS A 169 162.28 179.95 REMARK 500 18 LYS A 132 -46.05 -132.60 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30612 RELATED DB: BMRB REMARK 900 APOL1 N-TERMINAL DOMAIN REMARK 900 RELATED ID: 30832 RELATED DB: BMRB REMARK 900 APOL1 N-TERMINAL DOMAIN DBREF 7L6K A 61 172 UNP O14791 APOL1_HUMAN 61 172 SEQADV 7L6K GLY A 59 UNP O14791 EXPRESSION TAG SEQADV 7L6K SER A 60 UNP O14791 EXPRESSION TAG SEQRES 1 A 114 GLY SER ASP PRO GLU SER SER ILE PHE ILE GLU ASP ALA SEQRES 2 A 114 ILE LYS TYR PHE LYS GLU LYS VAL SER THR GLN ASN LEU SEQRES 3 A 114 LEU LEU LEU LEU THR ASP ASN GLU ALA TRP ASN GLY PHE SEQRES 4 A 114 VAL ALA ALA ALA GLU LEU PRO ARG ASN GLU ALA ASP GLU SEQRES 5 A 114 LEU ARG LYS ALA LEU ASP ASN LEU ALA ARG GLN MET ILE SEQRES 6 A 114 MET LYS ASP LYS ASN TRP HIS ASP LYS GLY GLN GLN TYR SEQRES 7 A 114 ARG ASN TRP PHE LEU LYS GLU PHE PRO ARG LEU LYS SER SEQRES 8 A 114 GLU LEU GLU ASP ASN ILE ARG ARG LEU ARG ALA LEU ALA SEQRES 9 A 114 ASP GLY VAL GLN LYS VAL HIS LYS GLY THR HELIX 1 AA1 GLU A 63 LYS A 78 1 16 HELIX 2 AA2 SER A 80 ASP A 90 1 11 HELIX 3 AA3 ASP A 90 GLU A 102 1 13 HELIX 4 AA4 PRO A 104 GLN A 121 1 18 HELIX 5 AA5 ASN A 138 GLU A 143 1 6 HELIX 6 AA6 LEU A 147 LYS A 167 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1