HEADER OXIDOREDUCTASE/INHIBITOR 26-DEC-20 7L76 TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH 2-(6-PHENYLBENZOFURAN-3- TITLE 2 YL)ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON REVDAT 3 18-OCT-23 7L76 1 REMARK REVDAT 2 25-AUG-21 7L76 1 JRNL REVDAT 1 11-AUG-21 7L76 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,R.DHOUIB,M.TOTSIKA, JRNL AUTH 2 M.J.SCANLON,B.HERAS,B.M.ABBOTT JRNL TITL ELABORATION OF A BENZOFURAN SCAFFOLD AND EVALUATION OF JRNL TITL 2 BINDING AFFINITY AND INHIBITION OF ESCHERICHIA COLI DSBA: A JRNL TITL 3 FRAGMENT-BASED DRUG DESIGN APPROACH TO NOVEL ANTIVIRULENCE JRNL TITL 4 COMPOUNDS. JRNL REF BIOORG.MED.CHEM. V. 45 16315 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 34364222 JRNL DOI 10.1016/J.BMC.2021.116315 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2800 - 4.4100 1.00 2765 158 0.1537 0.1813 REMARK 3 2 4.4100 - 3.5000 1.00 2711 154 0.1448 0.1669 REMARK 3 3 3.5000 - 3.0600 1.00 2711 141 0.1690 0.2281 REMARK 3 4 3.0600 - 2.7800 1.00 2695 153 0.1864 0.2387 REMARK 3 5 2.7800 - 2.5800 1.00 2690 148 0.1875 0.2497 REMARK 3 6 2.5800 - 2.4300 1.00 2695 153 0.1965 0.2750 REMARK 3 7 2.4300 - 2.3100 1.00 2694 134 0.1975 0.2545 REMARK 3 8 2.3100 - 2.2100 1.00 2692 133 0.2090 0.2716 REMARK 3 9 2.2100 - 2.1200 1.00 2679 148 0.2150 0.2510 REMARK 3 10 2.1200 - 2.0500 1.00 2691 128 0.2157 0.2447 REMARK 3 11 2.0500 - 1.9800 1.00 2663 154 0.2140 0.2628 REMARK 3 12 1.9800 - 1.9300 1.00 2724 126 0.2384 0.3316 REMARK 3 13 1.9300 - 1.8800 1.00 2697 112 0.2778 0.2930 REMARK 3 14 1.8800 - 1.8300 1.00 2656 155 0.3095 0.3590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.228 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3028 REMARK 3 ANGLE : 1.381 4119 REMARK 3 CHIRALITY : 0.082 450 REMARK 3 PLANARITY : 0.010 560 REMARK 3 DIHEDRAL : 5.259 426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8184 -9.5152 -11.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.5509 T22: 0.6052 REMARK 3 T33: 0.2570 T12: -0.1104 REMARK 3 T13: -0.0593 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.8590 L22: 7.7802 REMARK 3 L33: 1.5081 L12: 1.1921 REMARK 3 L13: -0.6568 L23: 2.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.3542 S13: 0.1746 REMARK 3 S21: -1.2949 S22: 0.0979 S23: 0.0188 REMARK 3 S31: -0.4757 S32: 1.4385 S33: -0.1218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0092 -10.0421 6.2091 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.3071 REMARK 3 T33: 0.2106 T12: -0.1011 REMARK 3 T13: -0.0214 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 0.5972 L22: 6.6789 REMARK 3 L33: 3.2107 L12: 0.8314 REMARK 3 L13: 0.5352 L23: 3.2239 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.2136 S13: -0.1000 REMARK 3 S21: 0.2596 S22: -0.0034 S23: -0.1279 REMARK 3 S31: 0.2587 S32: -0.0371 S33: -0.0409 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2231 -2.9907 19.0254 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1594 REMARK 3 T33: 0.1309 T12: -0.0595 REMARK 3 T13: -0.0243 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 4.2440 L22: 1.3612 REMARK 3 L33: 3.8348 L12: -0.2457 REMARK 3 L13: -0.0431 L23: -0.5610 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: 0.0380 S13: -0.0857 REMARK 3 S21: 0.0394 S22: -0.0100 S23: 0.0327 REMARK 3 S31: 0.1264 S32: -0.0791 S33: 0.1201 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4010 -1.4298 23.3548 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.3753 REMARK 3 T33: 0.2409 T12: 0.0138 REMARK 3 T13: -0.0465 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 5.2624 L22: 3.3913 REMARK 3 L33: 3.6923 L12: 3.6789 REMARK 3 L13: -3.5185 L23: -3.4001 REMARK 3 S TENSOR REMARK 3 S11: -0.3443 S12: -0.2440 S13: -0.1347 REMARK 3 S21: -0.0295 S22: -0.0173 S23: -0.5244 REMARK 3 S31: 0.5221 S32: 0.8434 S33: 0.4319 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1861 2.7864 5.1972 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.4240 REMARK 3 T33: 0.2398 T12: -0.1592 REMARK 3 T13: 0.0245 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 4.2537 L22: 2.5490 REMARK 3 L33: 3.6556 L12: -0.1508 REMARK 3 L13: 2.3350 L23: -0.5559 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: 0.4019 S13: 0.1193 REMARK 3 S21: -0.4306 S22: 0.1660 S23: -0.3316 REMARK 3 S31: -0.0932 S32: 0.7256 S33: 0.1056 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1786 -14.0167 -3.7301 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3677 REMARK 3 T33: 0.2500 T12: 0.0010 REMARK 3 T13: -0.0802 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 0.3845 L22: 6.8896 REMARK 3 L33: 2.8103 L12: 0.9804 REMARK 3 L13: 0.8292 L23: 1.5619 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: 0.2186 S13: 0.0223 REMARK 3 S21: -0.3532 S22: -0.0270 S23: 0.4539 REMARK 3 S31: -0.0369 S32: 0.3733 S33: -0.0831 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6519 9.4171 21.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.7419 T22: 0.4422 REMARK 3 T33: 0.5226 T12: 0.2261 REMARK 3 T13: 0.1069 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 2.4318 L22: 5.0155 REMARK 3 L33: 4.2076 L12: 1.5965 REMARK 3 L13: -1.3105 L23: 2.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.3476 S12: 0.4275 S13: 0.5449 REMARK 3 S21: -0.9403 S22: -0.0885 S23: 0.4514 REMARK 3 S31: -1.1318 S32: -0.7922 S33: -0.1428 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9103 -7.5371 21.9042 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1695 REMARK 3 T33: 0.2497 T12: 0.0013 REMARK 3 T13: 0.0204 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 3.3592 L22: 4.1812 REMARK 3 L33: 6.8769 L12: 0.0789 REMARK 3 L13: -0.9274 L23: 3.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: 0.2781 S13: 0.2230 REMARK 3 S21: -0.1630 S22: -0.1896 S23: 0.3456 REMARK 3 S31: -0.3381 S32: -0.5820 S33: -0.0723 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1392 -18.1571 15.5894 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1948 REMARK 3 T33: 0.1614 T12: -0.0546 REMARK 3 T13: -0.0527 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 8.6205 L22: 5.5604 REMARK 3 L33: 4.4440 L12: 0.4281 REMARK 3 L13: -2.1463 L23: 0.8743 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.0862 S13: 0.0570 REMARK 3 S21: -0.1444 S22: -0.1900 S23: 0.1322 REMARK 3 S31: -0.0849 S32: -0.2311 S33: 0.0908 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2080 -26.4316 12.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1950 REMARK 3 T33: 0.2162 T12: -0.0321 REMARK 3 T13: 0.0192 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 9.0060 L22: 4.8855 REMARK 3 L33: 4.8346 L12: 1.8279 REMARK 3 L13: 0.4757 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.4594 S12: 0.0535 S13: -0.8742 REMARK 3 S21: -0.1345 S22: 0.1598 S23: -0.2696 REMARK 3 S31: 0.2996 S32: -0.2136 S33: 0.2433 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2273 -3.3391 12.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.4927 T22: 0.5684 REMARK 3 T33: 0.4128 T12: 0.2487 REMARK 3 T13: 0.0158 T23: 0.1867 REMARK 3 L TENSOR REMARK 3 L11: 4.1258 L22: 1.6393 REMARK 3 L33: 3.0386 L12: 0.0558 REMARK 3 L13: 1.1760 L23: 0.3111 REMARK 3 S TENSOR REMARK 3 S11: 0.3880 S12: 0.5403 S13: 0.8079 REMARK 3 S21: -0.4951 S22: 0.0389 S23: 0.4152 REMARK 3 S31: -1.0596 S32: -0.8911 S33: 0.0380 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9135 5.1013 27.3092 REMARK 3 T TENSOR REMARK 3 T11: 0.6553 T22: 0.2474 REMARK 3 T33: 0.5644 T12: -0.0435 REMARK 3 T13: 0.3180 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.4072 L22: 3.9429 REMARK 3 L33: 3.8466 L12: 0.6633 REMARK 3 L13: -0.9912 L23: -3.6401 REMARK 3 S TENSOR REMARK 3 S11: 0.1621 S12: -0.0428 S13: 0.2380 REMARK 3 S21: -0.2918 S22: -0.0624 S23: -0.4383 REMARK 3 S31: -0.3896 S32: 0.4977 S33: 0.0098 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6978 4.0283 30.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.4830 T22: 0.1430 REMARK 3 T33: 0.4885 T12: 0.0763 REMARK 3 T13: 0.2853 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 0.4692 L22: 6.0622 REMARK 3 L33: 6.8652 L12: 1.6530 REMARK 3 L13: 0.3441 L23: 0.3360 REMARK 3 S TENSOR REMARK 3 S11: 0.3011 S12: -0.0493 S13: 0.4043 REMARK 3 S21: -0.0545 S22: 0.1687 S23: 0.6785 REMARK 3 S31: -0.4924 S32: -1.0006 S33: -0.2315 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.75650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.75650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.01550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLN A 164 CD OE1 NE2 REMARK 470 GLU B 13 CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 VAL B 16 CG1 CG2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 132 CE NZ REMARK 470 ARG B 148 CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 164 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 171 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -87.82 -103.73 REMARK 500 LYS B 7 -85.38 -97.17 REMARK 500 LYS B 98 -69.17 -102.90 REMARK 500 GLN B 146 55.07 37.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 79.9 REMARK 620 3 GLU B 4 OE2 166.1 99.5 REMARK 620 4 ASP B 44 OD1 101.5 21.8 77.7 REMARK 620 5 ASP B 44 OD2 103.3 23.4 77.0 4.2 REMARK 620 6 HOH B 406 O 99.0 97.4 94.8 97.0 92.9 REMARK 620 N 1 2 3 4 5 DBREF 7L76 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 7L76 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET XPV A 201 19 HET CU B 201 1 HETNAM XPV (6-PHENYL-1-BENZOFURAN-3-YL)ACETIC ACID HETNAM CU COPPER (II) ION FORMUL 3 XPV C16 H12 O3 FORMUL 4 CU CU 2+ FORMUL 5 HOH *348(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 ASN A 170 GLU A 187 1 18 HELIX 9 AA9 CYS B 30 VAL B 39 1 10 HELIX 10 AB1 HIS B 41 LEU B 50 1 10 HELIX 11 AB2 GLY B 65 GLY B 83 1 19 HELIX 12 AB3 VAL B 84 LYS B 98 1 15 HELIX 13 AB4 SER B 104 ALA B 115 1 12 HELIX 14 AB5 LYS B 118 ASN B 127 1 10 HELIX 15 AB6 SER B 128 VAL B 145 1 18 HELIX 16 AB7 PRO B 163 MET B 166 5 4 HELIX 17 AB8 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.10 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.12 LINK N ALA B 1 CU CU B 201 1555 1555 2.24 LINK O ALA B 1 CU CU B 201 1555 1555 2.12 LINK OE2 GLU B 4 CU CU B 201 1555 1555 1.99 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.35 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.50 LINK CU CU B 201 O HOH B 406 1555 4556 2.27 CISPEP 1 VAL A 150 PRO A 151 0 -3.98 CISPEP 2 VAL B 150 PRO B 151 0 -4.03 CRYST1 117.513 64.031 74.704 90.00 125.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008510 0.000000 0.006142 0.00000 SCALE2 0.000000 0.015617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016509 0.00000