HEADER OXIDOREDUCTASE/INHIBITOR 28-DEC-20 7L7C TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH 2-(6-(3-METHOXYPHENYL) TITLE 2 BENZOFURAN-3-YL)ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON REVDAT 3 18-OCT-23 7L7C 1 REMARK REVDAT 2 25-AUG-21 7L7C 1 JRNL REVDAT 1 11-AUG-21 7L7C 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,R.DHOUIB,M.TOTSIKA, JRNL AUTH 2 M.J.SCANLON,B.HERAS,B.M.ABBOTT JRNL TITL ELABORATION OF A BENZOFURAN SCAFFOLD AND EVALUATION OF JRNL TITL 2 BINDING AFFINITY AND INHIBITION OF ESCHERICHIA COLI DSBA: A JRNL TITL 3 FRAGMENT-BASED DRUG DESIGN APPROACH TO NOVEL ANTIVIRULENCE JRNL TITL 4 COMPOUNDS. JRNL REF BIOORG.MED.CHEM. V. 45 16315 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 34364222 JRNL DOI 10.1016/J.BMC.2021.116315 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8600 - 4.4400 1.00 2711 147 0.1556 0.1623 REMARK 3 2 4.4400 - 3.5200 1.00 2659 129 0.1306 0.1568 REMARK 3 3 3.5200 - 3.0800 1.00 2646 163 0.1512 0.1819 REMARK 3 4 3.0800 - 2.8000 1.00 2624 146 0.1595 0.2036 REMARK 3 5 2.8000 - 2.6000 1.00 2648 137 0.1663 0.1829 REMARK 3 6 2.6000 - 2.4400 1.00 2620 138 0.1659 0.2191 REMARK 3 7 2.4400 - 2.3200 1.00 2647 143 0.1645 0.1933 REMARK 3 8 2.3200 - 2.2200 1.00 2614 135 0.1735 0.2375 REMARK 3 9 2.2200 - 2.1300 1.00 2622 129 0.1709 0.2159 REMARK 3 10 2.1300 - 2.0600 1.00 2613 158 0.1787 0.1930 REMARK 3 11 2.0600 - 2.0000 1.00 2638 142 0.1835 0.2376 REMARK 3 12 2.0000 - 1.9400 1.00 2628 131 0.1978 0.2411 REMARK 3 13 1.9400 - 1.8900 1.00 2629 130 0.2235 0.2528 REMARK 3 14 1.8900 - 1.8400 1.00 2618 130 0.2552 0.2985 REMARK 3 15 1.8400 - 1.8000 1.00 2607 132 0.2739 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.194 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3028 REMARK 3 ANGLE : 1.271 4119 REMARK 3 CHIRALITY : 0.077 452 REMARK 3 PLANARITY : 0.009 562 REMARK 3 DIHEDRAL : 4.984 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2816 -9.1839 -11.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.6082 T22: 0.4004 REMARK 3 T33: 0.0513 T12: -0.2081 REMARK 3 T13: -0.0784 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.5579 L22: 2.0691 REMARK 3 L33: 2.2112 L12: -1.0915 REMARK 3 L13: 0.0441 L23: -0.1835 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: 0.3361 S13: 0.2729 REMARK 3 S21: -1.0662 S22: 0.0563 S23: -0.3300 REMARK 3 S31: -1.1549 S32: 1.0810 S33: 0.1001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0933 -7.6191 8.5741 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1934 REMARK 3 T33: 0.1173 T12: -0.0225 REMARK 3 T13: -0.0321 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.3107 L22: 2.3042 REMARK 3 L33: 1.8392 L12: -0.0801 REMARK 3 L13: -0.2620 L23: 0.6591 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.0126 S13: 0.0328 REMARK 3 S21: -0.1038 S22: -0.1483 S23: 0.2507 REMARK 3 S31: -0.0837 S32: -0.2456 S33: 0.1709 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4367 -19.3144 5.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1982 REMARK 3 T33: 0.1094 T12: -0.0365 REMARK 3 T13: -0.0621 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 6.1712 L22: 3.2273 REMARK 3 L33: 4.3432 L12: -2.5055 REMARK 3 L13: -3.6145 L23: 1.6844 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: -0.2587 S13: -0.1032 REMARK 3 S21: 0.2436 S22: 0.1210 S23: 0.0251 REMARK 3 S31: 0.4773 S32: 0.0291 S33: 0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2955 -7.2492 4.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1719 REMARK 3 T33: 0.1117 T12: -0.0208 REMARK 3 T13: -0.0040 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.6635 L22: 4.2441 REMARK 3 L33: 2.5270 L12: 1.0869 REMARK 3 L13: 0.2403 L23: 2.3611 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.1209 S13: 0.0080 REMARK 3 S21: 0.0330 S22: 0.2873 S23: -0.6473 REMARK 3 S31: 0.0041 S32: 0.1385 S33: -0.1293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9542 -2.4672 18.8843 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1700 REMARK 3 T33: 0.0830 T12: -0.0325 REMARK 3 T13: -0.0436 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2051 L22: 1.6236 REMARK 3 L33: 1.3994 L12: 0.1349 REMARK 3 L13: -0.3299 L23: 0.0560 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0368 S13: -0.0047 REMARK 3 S21: 0.1563 S22: -0.0494 S23: -0.0050 REMARK 3 S31: 0.0595 S32: -0.0356 S33: 0.0267 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3790 -0.6295 22.7890 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.2808 REMARK 3 T33: 0.2435 T12: -0.0203 REMARK 3 T13: -0.0996 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5311 L22: 3.7224 REMARK 3 L33: 3.0659 L12: 0.7971 REMARK 3 L13: -1.0630 L23: -1.5900 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.2963 S13: -0.0818 REMARK 3 S21: 0.3311 S22: -0.1472 S23: -0.7913 REMARK 3 S31: 0.0151 S32: 0.6343 S33: 0.0119 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4308 3.0895 4.9807 REMARK 3 T TENSOR REMARK 3 T11: 0.3052 T22: 0.1855 REMARK 3 T33: 0.1959 T12: -0.0710 REMARK 3 T13: 0.0153 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 4.4114 L22: 2.1563 REMARK 3 L33: 4.8549 L12: -0.9356 REMARK 3 L13: 2.3786 L23: 0.4083 REMARK 3 S TENSOR REMARK 3 S11: -0.2693 S12: 0.5007 S13: 0.2580 REMARK 3 S21: -1.0080 S22: 0.2503 S23: -0.4336 REMARK 3 S31: -0.3856 S32: 0.5321 S33: 0.1482 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3124 -6.0169 -4.0958 REMARK 3 T TENSOR REMARK 3 T11: 0.4522 T22: 0.2938 REMARK 3 T33: 0.1112 T12: -0.1805 REMARK 3 T13: -0.0522 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 2.3685 L22: 1.2762 REMARK 3 L33: 3.9526 L12: 0.3167 REMARK 3 L13: -1.2325 L23: 1.2641 REMARK 3 S TENSOR REMARK 3 S11: -0.3646 S12: 0.3362 S13: 0.4024 REMARK 3 S21: -1.1127 S22: 0.5652 S23: -0.1147 REMARK 3 S31: -0.9292 S32: 0.3050 S33: 0.2004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3673 -17.8614 -3.4424 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.1616 REMARK 3 T33: 0.0884 T12: -0.0326 REMARK 3 T13: -0.0436 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.4214 L22: 2.5795 REMARK 3 L33: 2.5586 L12: 0.7661 REMARK 3 L13: -0.6528 L23: 0.5376 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: 0.2191 S13: -0.0098 REMARK 3 S21: -0.1665 S22: -0.0009 S23: 0.0883 REMARK 3 S31: -0.1910 S32: -0.0099 S33: 0.0962 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1708 12.6613 25.6727 REMARK 3 T TENSOR REMARK 3 T11: 0.4026 T22: 0.2031 REMARK 3 T33: 0.3447 T12: 0.0025 REMARK 3 T13: 0.1094 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.2755 L22: 1.2323 REMARK 3 L33: 1.6027 L12: -0.0025 REMARK 3 L13: -0.2510 L23: 1.2839 REMARK 3 S TENSOR REMARK 3 S11: 0.2027 S12: 0.1716 S13: 0.1124 REMARK 3 S21: -0.3827 S22: 0.1354 S23: 0.2071 REMARK 3 S31: -0.4083 S32: -0.1310 S33: -0.2490 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3954 5.1887 14.8757 REMARK 3 T TENSOR REMARK 3 T11: 0.4846 T22: 0.4738 REMARK 3 T33: 0.6217 T12: 0.1582 REMARK 3 T13: -0.1065 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 2.8598 L22: 8.1034 REMARK 3 L33: 4.0677 L12: 0.5496 REMARK 3 L13: 2.2143 L23: -2.2828 REMARK 3 S TENSOR REMARK 3 S11: -0.3460 S12: 0.1338 S13: 0.4887 REMARK 3 S21: -0.5563 S22: 0.2852 S23: 0.4012 REMARK 3 S31: -0.4637 S32: -0.7245 S33: 0.0935 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4903 -7.8024 23.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.1726 REMARK 3 T33: 0.3415 T12: -0.0322 REMARK 3 T13: 0.0796 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.4803 L22: 0.5340 REMARK 3 L33: 1.2502 L12: -0.0213 REMARK 3 L13: 0.0003 L23: 0.6614 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.0672 S13: -0.0956 REMARK 3 S21: 0.0014 S22: 0.0374 S23: 0.1915 REMARK 3 S31: -0.0294 S32: -0.0101 S33: 0.0153 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1568 -6.5717 18.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.2276 REMARK 3 T33: 0.4014 T12: -0.0297 REMARK 3 T13: 0.0377 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.1153 L22: 2.4912 REMARK 3 L33: 3.5605 L12: -0.4068 REMARK 3 L13: 0.6325 L23: 1.1731 REMARK 3 S TENSOR REMARK 3 S11: 0.2540 S12: -0.1806 S13: 0.3443 REMARK 3 S21: -0.0338 S22: -0.2191 S23: 0.5430 REMARK 3 S31: -0.4431 S32: -0.3472 S33: -0.0758 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1982 -20.7568 14.7906 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1786 REMARK 3 T33: 0.2636 T12: -0.0422 REMARK 3 T13: 0.0272 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.6805 L22: 1.2952 REMARK 3 L33: 1.1349 L12: -0.2957 REMARK 3 L13: -0.5694 L23: 0.4530 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0096 S13: -0.1616 REMARK 3 S21: 0.0183 S22: -0.0140 S23: 0.2087 REMARK 3 S31: -0.0173 S32: -0.0703 S33: 0.0569 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6804 -26.9931 11.6279 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.2220 REMARK 3 T33: 0.3536 T12: -0.0428 REMARK 3 T13: 0.0079 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 3.2561 L22: 1.8891 REMARK 3 L33: 4.0582 L12: 0.7050 REMARK 3 L13: 1.0853 L23: -0.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: 0.2553 S13: -0.2810 REMARK 3 S21: -0.2574 S22: 0.0962 S23: 0.1739 REMARK 3 S31: 0.3449 S32: -0.2595 S33: 0.0263 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2409 -8.6849 8.5716 REMARK 3 T TENSOR REMARK 3 T11: 0.2644 T22: 0.2884 REMARK 3 T33: 0.4299 T12: 0.0763 REMARK 3 T13: -0.0637 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.6021 L22: 3.5027 REMARK 3 L33: 3.6257 L12: 0.1942 REMARK 3 L13: -0.3881 L23: -0.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.1463 S13: 0.1521 REMARK 3 S21: -0.3501 S22: -0.0587 S23: 1.0048 REMARK 3 S31: -0.5562 S32: -0.5987 S33: 0.1382 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3198 2.6073 17.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.3581 T22: 0.2200 REMARK 3 T33: 0.3672 T12: 0.0070 REMARK 3 T13: 0.0158 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.6308 L22: 5.0095 REMARK 3 L33: 4.7121 L12: -1.9867 REMARK 3 L13: -0.6163 L23: 1.2209 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: 0.2732 S13: 0.5222 REMARK 3 S21: -0.7040 S22: 0.1339 S23: 0.3066 REMARK 3 S31: -0.4477 S32: -0.2451 S33: 0.0015 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8720 5.2373 27.4494 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.2680 REMARK 3 T33: 0.4674 T12: -0.0350 REMARK 3 T13: 0.1480 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.7498 L22: 5.0973 REMARK 3 L33: 3.7390 L12: -0.4681 REMARK 3 L13: 0.3238 L23: -1.9689 REMARK 3 S TENSOR REMARK 3 S11: -0.2026 S12: -0.0377 S13: -0.3888 REMARK 3 S21: -0.5761 S22: 0.1501 S23: -0.7097 REMARK 3 S31: 0.1426 S32: 0.8161 S33: 0.0373 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0751 3.7340 30.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.1339 REMARK 3 T33: 0.3752 T12: -0.0111 REMARK 3 T13: 0.1283 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.2276 L22: 2.8432 REMARK 3 L33: 4.3022 L12: 0.4127 REMARK 3 L13: 0.9033 L23: 0.1178 REMARK 3 S TENSOR REMARK 3 S11: -0.0932 S12: 0.0247 S13: 0.2677 REMARK 3 S21: -0.0637 S22: 0.0274 S23: 0.1593 REMARK 3 S31: -0.0866 S32: -0.2297 S33: 0.0587 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.65850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.90400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.65850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.90400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CE NZ REMARK 470 GLU A 13 CD OE1 OE2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 139 O HOH A 301 2.12 REMARK 500 OD1 ASP A 44 O HOH A 302 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 120 CG GLU A 120 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -85.31 -102.84 REMARK 500 LYS B 7 -86.67 -93.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 563 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 528 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 85.3 REMARK 620 3 GLU B 4 OE2 172.2 97.3 REMARK 620 4 ASP B 44 OD1 105.2 20.0 77.2 REMARK 620 5 ASP B 44 OD2 103.2 18.9 78.7 4.2 REMARK 620 6 HOH B 444 O 94.4 91.4 92.9 92.3 96.1 REMARK 620 N 1 2 3 4 5 DBREF 7L7C A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 7L7C B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET XQ1 A 201 21 HET CU B 201 1 HETNAM XQ1 [6-(3-METHOXYPHENYL)-1-BENZOFURAN-3-YL]ACETIC ACID HETNAM CU COPPER (II) ION FORMUL 3 XQ1 C17 H14 O4 FORMUL 4 CU CU 2+ FORMUL 5 HOH *492(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 ASP A 144 1 17 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N VAL B 155 O TYR B 159 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O TYR B 59 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.09 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.10 LINK N ALA B 1 CU CU B 201 1555 1555 2.16 LINK O ALA B 1 CU CU B 201 1555 1555 2.13 LINK OE2 GLU B 4 CU CU B 201 1555 1555 2.06 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.66 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.26 LINK CU CU B 201 O HOH B 444 1555 1555 2.11 CISPEP 1 VAL A 150 PRO A 151 0 -4.01 CISPEP 2 VAL B 150 PRO B 151 0 -2.46 CRYST1 117.317 63.808 74.073 90.00 125.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008524 0.000000 0.005974 0.00000 SCALE2 0.000000 0.015672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016485 0.00000